FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5317, 289 aa 1>>>pF1KE5317 289 - 289 aa - 289 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.0256+/-0.00029; mu= 4.2969+/- 0.018 mean_var=146.5492+/-30.321, 0's: 0 Z-trim(122.9): 36 B-trim: 1350 in 1/56 Lambda= 0.105945 statistics sampled from 41687 (41735) to 41687 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.799), E-opt: 0.2 (0.489), width: 16 Scan time: 6.580 The best scores are: opt bits E(85289) NP_071915 (OMIM: 606452) zinc finger matrin-type p ( 289) 1992 315.1 1e-85 XP_011511375 (OMIM: 606452) PREDICTED: zinc finger ( 289) 1992 315.1 1e-85 NP_689426 (OMIM: 606452) zinc finger matrin-type p ( 288) 1975 312.5 6.1e-85 XP_005247763 (OMIM: 606452) PREDICTED: zinc finger ( 288) 1975 312.5 6.1e-85 >>NP_071915 (OMIM: 606452) zinc finger matrin-type prote (289 aa) initn: 1992 init1: 1992 opt: 1992 Z-score: 1660.0 bits: 315.1 E(85289): 1e-85 Smith-Waterman score: 1992; 100.0% identity (100.0% similar) in 289 aa overlap (1-289:1-289) 10 20 30 40 50 60 pF1KE5 MILLQHAVLPPPKQPSPSPPMSVATRSTGTLQLPPQKPFGQEASLPLAGEEELSKGGEQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_071 MILLQHAVLPPPKQPSPSPPMSVATRSTGTLQLPPQKPFGQEASLPLAGEEELSKGGEQD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 CALEELCKPLYCKLCNVTLNSAQQAQAHYQGKNHGKKLRNYYAANSCPPPARMSNVVEPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_071 CALEELCKPLYCKLCNVTLNSAQQAQAHYQGKNHGKKLRNYYAANSCPPPARMSNVVEPA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 ATPVVPVPPQMGSFKPGGRVILATENDYCKLCDASFSSPAVAQAHYQGKNHAKRLRLAEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_071 ATPVVPVPPQMGSFKPGGRVILATENDYCKLCDASFSSPAVAQAHYQGKNHAKRLRLAEA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 QSNSFSESSELGQRRARKEGNEFKMMPNRRNMYTVQNNSAGPYFNPRSRQRIPRDLAMCV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_071 QSNSFSESSELGQRRARKEGNEFKMMPNRRNMYTVQNNSAGPYFNPRSRQRIPRDLAMCV 190 200 210 220 230 240 250 260 270 280 pF1KE5 TPSGQFYCSMCNVGAGEEMEFRQHLESKQHKSKVSEQRYRNEMENLGYV ::::::::::::::::::::::::::::::::::::::::::::::::: NP_071 TPSGQFYCSMCNVGAGEEMEFRQHLESKQHKSKVSEQRYRNEMENLGYV 250 260 270 280 >>XP_011511375 (OMIM: 606452) PREDICTED: zinc finger mat (289 aa) initn: 1992 init1: 1992 opt: 1992 Z-score: 1660.0 bits: 315.1 E(85289): 1e-85 Smith-Waterman score: 1992; 100.0% identity (100.0% similar) in 289 aa overlap (1-289:1-289) 10 20 30 40 50 60 pF1KE5 MILLQHAVLPPPKQPSPSPPMSVATRSTGTLQLPPQKPFGQEASLPLAGEEELSKGGEQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MILLQHAVLPPPKQPSPSPPMSVATRSTGTLQLPPQKPFGQEASLPLAGEEELSKGGEQD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 CALEELCKPLYCKLCNVTLNSAQQAQAHYQGKNHGKKLRNYYAANSCPPPARMSNVVEPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 CALEELCKPLYCKLCNVTLNSAQQAQAHYQGKNHGKKLRNYYAANSCPPPARMSNVVEPA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 ATPVVPVPPQMGSFKPGGRVILATENDYCKLCDASFSSPAVAQAHYQGKNHAKRLRLAEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ATPVVPVPPQMGSFKPGGRVILATENDYCKLCDASFSSPAVAQAHYQGKNHAKRLRLAEA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 QSNSFSESSELGQRRARKEGNEFKMMPNRRNMYTVQNNSAGPYFNPRSRQRIPRDLAMCV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 QSNSFSESSELGQRRARKEGNEFKMMPNRRNMYTVQNNSAGPYFNPRSRQRIPRDLAMCV 190 200 210 220 230 240 250 260 270 280 pF1KE5 TPSGQFYCSMCNVGAGEEMEFRQHLESKQHKSKVSEQRYRNEMENLGYV ::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 TPSGQFYCSMCNVGAGEEMEFRQHLESKQHKSKVSEQRYRNEMENLGYV 250 260 270 280 >>NP_689426 (OMIM: 606452) zinc finger matrin-type prote (288 aa) initn: 1499 init1: 1499 opt: 1975 Z-score: 1645.9 bits: 312.5 E(85289): 6.1e-85 Smith-Waterman score: 1975; 99.7% identity (99.7% similar) in 289 aa overlap (1-289:1-288) 10 20 30 40 50 60 pF1KE5 MILLQHAVLPPPKQPSPSPPMSVATRSTGTLQLPPQKPFGQEASLPLAGEEELSKGGEQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_689 MILLQHAVLPPPKQPSPSPPMSVATRSTGTLQLPPQKPFGQEASLPLAGEEELSKGGEQD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 CALEELCKPLYCKLCNVTLNSAQQAQAHYQGKNHGKKLRNYYAANSCPPPARMSNVVEPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_689 CALEELCKPLYCKLCNVTLNSAQQAQAHYQGKNHGKKLRNYYAANSCPPPARMSNVVEPA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 ATPVVPVPPQMGSFKPGGRVILATENDYCKLCDASFSSPAVAQAHYQGKNHAKRLRLAEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_689 ATPVVPVPPQMGSFKPGGRVILATENDYCKLCDASFSSPAVAQAHYQGKNHAKRLRLAEA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 QSNSFSESSELGQRRARKEGNEFKMMPNRRNMYTVQNNSAGPYFNPRSRQRIPRDLAMCV ::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::: NP_689 QSNSFSESSELGQRRARKEGNEFKMMPNRRNMYTVQNNS-GPYFNPRSRQRIPRDLAMCV 190 200 210 220 230 250 260 270 280 pF1KE5 TPSGQFYCSMCNVGAGEEMEFRQHLESKQHKSKVSEQRYRNEMENLGYV ::::::::::::::::::::::::::::::::::::::::::::::::: NP_689 TPSGQFYCSMCNVGAGEEMEFRQHLESKQHKSKVSEQRYRNEMENLGYV 240 250 260 270 280 >>XP_005247763 (OMIM: 606452) PREDICTED: zinc finger mat (288 aa) initn: 1499 init1: 1499 opt: 1975 Z-score: 1645.9 bits: 312.5 E(85289): 6.1e-85 Smith-Waterman score: 1975; 99.7% identity (99.7% similar) in 289 aa overlap (1-289:1-288) 10 20 30 40 50 60 pF1KE5 MILLQHAVLPPPKQPSPSPPMSVATRSTGTLQLPPQKPFGQEASLPLAGEEELSKGGEQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MILLQHAVLPPPKQPSPSPPMSVATRSTGTLQLPPQKPFGQEASLPLAGEEELSKGGEQD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 CALEELCKPLYCKLCNVTLNSAQQAQAHYQGKNHGKKLRNYYAANSCPPPARMSNVVEPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 CALEELCKPLYCKLCNVTLNSAQQAQAHYQGKNHGKKLRNYYAANSCPPPARMSNVVEPA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 ATPVVPVPPQMGSFKPGGRVILATENDYCKLCDASFSSPAVAQAHYQGKNHAKRLRLAEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 ATPVVPVPPQMGSFKPGGRVILATENDYCKLCDASFSSPAVAQAHYQGKNHAKRLRLAEA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 QSNSFSESSELGQRRARKEGNEFKMMPNRRNMYTVQNNSAGPYFNPRSRQRIPRDLAMCV ::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::: XP_005 QSNSFSESSELGQRRARKEGNEFKMMPNRRNMYTVQNNS-GPYFNPRSRQRIPRDLAMCV 190 200 210 220 230 250 260 270 280 pF1KE5 TPSGQFYCSMCNVGAGEEMEFRQHLESKQHKSKVSEQRYRNEMENLGYV ::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 TPSGQFYCSMCNVGAGEEMEFRQHLESKQHKSKVSEQRYRNEMENLGYV 240 250 260 270 280 289 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 23:45:14 2016 done: Mon Nov 7 23:45:15 2016 Total Scan time: 6.580 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]