FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2420, 2005 aa 1>>>pF1KE2420 2005 - 2005 aa - 2005 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.5090+/-0.00111; mu= 17.8998+/- 0.067 mean_var=72.9771+/-14.444, 0's: 0 Z-trim(102.5): 40 B-trim: 0 in 0/49 Lambda= 0.150135 statistics sampled from 6965 (6977) to 6965 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.561), E-opt: 0.2 (0.214), width: 16 Scan time: 4.610 The best scores are: opt bits E(32554) CCDS45822.1 SMCHD1 gene_id:23347|Hs108|chr18 (2005) 13354 2902.9 0 >>CCDS45822.1 SMCHD1 gene_id:23347|Hs108|chr18 (2005 aa) initn: 13354 init1: 13354 opt: 13354 Z-score: 15615.3 bits: 2902.9 E(32554): 0 Smith-Waterman score: 13354; 99.9% identity (100.0% similar) in 2005 aa overlap (1-2005:1-2005) 10 20 30 40 50 60 pF1KE2 MAAADGGGPGGASVGTEEDGGGVGHRTVYLFDRREKESELGDRPLQVGERSDYAGFRACV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 MAAADGGGPGGASVGTEEDGGGVGHRTVYLFDRREKESELGDRPLQVGERSDYAGFRACV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 CQTLGISPEEKFVITTTSRKEITCDNFDETVKDGVTLYLLQSVNQLLLTATKERIDFLPH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 CQTLGISPEEKFVITTTSRKEITCDNFDETVKDGVTLYLLQSVNQLLLTATKERIDFLPH 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 YDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNIGVRRIQIKLLFDETQGKPAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 YDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNIGVRRIQIKLLFDETQGKPAV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 AVIDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 AVIDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGK 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 QAVFFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSVHITN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 QAVFFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSVHITN 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 DDERFLHHLIIEEKEKDSFTAVVITGVQPEHIQYLKNYFHLWTRQLAHIYHYYIHGPKGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 DDERFLHHLIIEEKEKDSFTAVVITGVQPEHIQYLKNYFHLWTRQLAHIYHYYIHGPKGN 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE2 EIRTSKEVEPFNNIDIEISMFEKGKVPKIVNLREIQDDMQTLYVNTAADSFEFKAHVEGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 EIRTSKEVEPFNNIDIEISMFEKGKVPKIVNLREIQDDMQTLYVNTAADSFEFKAHVEGD 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE2 GVVEGIIRYHPFLYDRETYPDDPCFPSKLKDEDDEDDCFILEKAARGKRPIFECFWNGRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 GVVEGIIRYHPFLYDRETYPDDPCFPSKLKDEDDEDDCFILEKAARGKRPIFECFWNGRL 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE2 IPYTSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 IPYTSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNT 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE2 LFTRILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGVITRPDLPSKKQGPWATYA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 LFTRILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGVITRPDLPSKKQGPWATYA 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE2 AIEWDGKIYKAGQLVKTIKTLPLFYGSIVRFFLYGDHDGEVYATGGEVQIAMEPQALYDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 AIEWDGKIYKAGQLVKTIKTLPLFYGSIVRFFLYGDHDGEVYATGGEVQIAMEPQALYDE 610 620 630 640 650 660 670 680 690 700 710 720 pF1KE2 VRTVPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEIRPAGTPIGALRI :::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::: CCDS45 VRTVPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEVRPAGTPIGALRI 670 680 690 700 710 720 730 740 750 760 770 780 pF1KE2 EILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSSSGNKEIISHISQHGGKWPYWFKKME :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 EILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSSSGNKEIISHISQHGGKWPYWFKKME 730 740 750 760 770 780 790 800 810 820 830 840 pF1KE2 NIQKLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLLDLPFRVGVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 NIQKLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLLDLPFRVGVP 790 800 810 820 830 840 850 860 870 880 890 900 pF1KE2 FNIPLEFQDEFGHTSQLVTDIQPVLEASGLSLHYEEITNGPNCVIRGVTAKGPVNSCQGK ::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::: CCDS45 FNIPLEFQDEFGHTSQLVTDIQPVLEASGLSLHYEEITKGPNCVIRGVTAKGPVNSCQGK 850 860 870 880 890 900 910 920 930 940 950 960 pF1KE2 NYNLKVTLPGLKEDSQILKIRLLPGHPRRLKVKPDSEILVIENGTAFPFQVEVLDESDNI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 NYNLKVTLPGLKEDSQILKIRLLPGHPRRLKVKPDSEILVIENGTAFPFQVEVLDESDNI 910 920 930 940 950 960 970 980 990 1000 1010 1020 pF1KE2 TAQPKLIVHCKFSGAPNLPVYVVDCSSSGTSILTGSAIQVQNIKKDQTLKARIEIPSCKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 TAQPKLIVHCKFSGAPNLPVYVVDCSSSGTSILTGSAIQVQNIKKDQTLKARIEIPSCKD 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 pF1KE2 VAPVEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDIMHNLIFQMYDEGERE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 VAPVEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDIMHNLIFQMYDEGERE 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 pF1KE2 INITSALAEKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 INITSALAEKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFT 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 pF1KE2 VRPLPDEPKHLKCEMKGGKTVQMGQELQGEVVIIITDQYGNQIQAFSPSSLSSLSIAGVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 VRPLPDEPKHLKCEMKGGKTVQMGQELQGEVVIIITDQYGNQIQAFSPSSLSSLSIAGVG 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 pF1KE2 LDSSNLKTTFQENTQSISVRGIKFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 LDSSNLKTTFQENTQSISVRGIKFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLI 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 pF1KE2 DWPELKESIPVINGRDLQNPIIVQLCDQWDNPAPVQHVKISLTKASNLKLMPSNQQHKTD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 DWPELKESIPVINGRDLQNPIIVQLCDQWDNPAPVQHVKISLTKASNLKLMPSNQQHKTD 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 pF1KE2 EKGRANLGVFSVFAPRGEHTLQVKAIYNKSIIEGPIIKLMILPDPEKPVRLNVKYDKDAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 EKGRANLGVFSVFAPRGEHTLQVKAIYNKSIIEGPIIKLMILPDPEKPVRLNVKYDKDAS 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 pF1KE2 FLAGGLFTDFMISVISEDDSIIKNINPARISMKMWKLSTSGNRPPANAETFSCNKIKDND :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 FLAGGLFTDFMISVISEDDSIIKNINPARISMKMWKLSTSGNRPPANAETFSCNKIKDND 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 pF1KE2 KEDGCFYFRDKVIPNKVGTYCIQFGFMMDKTNILNSEQVIVEVLPNQPVKLVPKIKPPTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 KEDGCFYFRDKVIPNKVGTYCIQFGFMMDKTNILNSEQVIVEVLPNQPVKLVPKIKPPTP 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1560 pF1KE2 AVSNVRSVASRTLVRDLHLSITDDYDNHTGIDLVGTIIATIKGSNEEDTDTPLFIGKVRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 AVSNVRSVASRTLVRDLHLSITDDYDNHTGIDLVGTIIATIKGSNEEDTDTPLFIGKVRT 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 1610 1620 pF1KE2 LEFPFVNGSAEIMSLVLAESSPGRDSTEYFIVFEPRLPLLSRTLEPYILPFMFYNDVKKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 LEFPFVNGSAEIMSLVLAESSPGRDSTEYFIVFEPRLPLLSRTLEPYILPFMFYNDVKKQ 1570 1580 1590 1600 1610 1620 1630 1640 1650 1660 1670 1680 pF1KE2 QQMAALTKEKDQLSQSIVMYKSLFEASQQLLNEMKCQVEEARLKEAQLRNELKIHNIDIP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 QQMAALTKEKDQLSQSIVMYKSLFEASQQLLNEMKCQVEEARLKEAQLRNELKIHNIDIP 1630 1640 1650 1660 1670 1680 1690 1700 1710 1720 1730 1740 pF1KE2 TTQQVPHIEALLKRKLSEQEELKKKPRRSCTLPNYTKGSGDVLGKIAHLAQIEDDRAAMV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 TTQQVPHIEALLKRKLSEQEELKKKPRRSCTLPNYTKGSGDVLGKIAHLAQIEDDRAAMV 1690 1700 1710 1720 1730 1740 1750 1760 1770 1780 1790 1800 pF1KE2 ISWHLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRSLPHFRNGKLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 ISWHLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRSLPHFRNGKLY 1750 1760 1770 1780 1790 1800 1810 1820 1830 1840 1850 1860 pF1KE2 FKPIGDPVFARDLLTFPDNVEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 FKPIGDPVFARDLLTFPDNVEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLL 1810 1820 1830 1840 1850 1860 1870 1880 1890 1900 1910 1920 pF1KE2 TRDGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCLILGEQIDLLQQYRSAVCKLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 TRDGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCLILGEQIDLLQQYRSAVCKLD 1870 1880 1890 1900 1910 1920 1930 1940 1950 1960 1970 1980 pF1KE2 SVNKDLNSQLEYLRTPDMRKKKQELDEHEKNLKLIEEKLGMTPIRKCNDSLRHSPKVETT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS45 SVNKDLNSQLEYLRTPDMRKKKQELDEHEKNLKLIEEKLGMTPIRKCNDSLRHSPKVETT 1930 1940 1950 1960 1970 1980 1990 2000 pF1KE2 DCPVPPKRMRREATRQNRIITKTDV ::::::::::::::::::::::::: CCDS45 DCPVPPKRMRREATRQNRIITKTDV 1990 2000 2005 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 19:45:33 2016 done: Mon Nov 7 19:45:34 2016 Total Scan time: 4.610 Total Display time: 0.070 Function used was FASTA [36.3.4 Apr, 2011]