Result of FASTA (omim) for
pFN21AE6284
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6284, 268 aa
1>>>pF1KE6284 268 - 268 aa - 268 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0358+/-0.000407; mu= 16.5476+/- 0.025
mean_var=65.9696+/-13.788, 0's: 0 Z-trim(110.3): 47 B-trim: 185 in 1/54
Lambda= 0.157907
statistics sampled from 18538 (18574) to 18538 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.6), E-opt: 0.2 (0.218), width: 16
Scan time: 4.590
The best scores are: opt bits E(85289)
NP_858057 (OMIM: 605134) cytoplasmic phosphatidyli ( 268) 1860 432.7 3.4e-121
XP_016879932 (OMIM: 605134) PREDICTED: cytoplasmic ( 258) 1753 408.3 7.1e-114
XP_016879933 (OMIM: 605134) PREDICTED: cytoplasmic ( 245) 1705 397.4 1.3e-110
XP_016879934 (OMIM: 605134) PREDICTED: cytoplasmic ( 245) 1705 397.4 1.3e-110
NP_036549 (OMIM: 605134) cytoplasmic phosphatidyli ( 332) 1674 390.4 2.3e-108
XP_016879931 (OMIM: 605134) PREDICTED: cytoplasmic ( 322) 1567 366.0 4.8e-101
XP_005257273 (OMIM: 605134) PREDICTED: cytoplasmic ( 309) 1519 355.1 9.2e-98
NP_001287730 (OMIM: 608920) membrane-associated ph (1343) 786 188.5 5.5e-47
NP_065896 (OMIM: 608920) membrane-associated phosp (1349) 786 188.5 5.5e-47
XP_011543698 (OMIM: 608794) PREDICTED: membrane-as (1243) 762 183.0 2.3e-45
NP_001124320 (OMIM: 608794) membrane-associated ph (1243) 762 183.0 2.3e-45
NP_004901 (OMIM: 608794) membrane-associated phosp (1244) 762 183.0 2.3e-45
XP_016874075 (OMIM: 608794) PREDICTED: membrane-as (1244) 762 183.0 2.3e-45
NP_006215 (OMIM: 600174) phosphatidylinositol tran ( 270) 607 147.3 2.9e-35
XP_011536892 (OMIM: 608920) PREDICTED: membrane-as (1382) 576 140.7 1.4e-32
NP_036531 (OMIM: 606876) phosphatidylinositol tran ( 271) 545 133.1 5.2e-31
NP_001271206 (OMIM: 606876) phosphatidylinositol t ( 272) 545 133.1 5.2e-31
NP_001271207 (OMIM: 606876) phosphatidylinositol t ( 273) 531 130.0 4.7e-30
XP_011528354 (OMIM: 606876) PREDICTED: phosphatidy ( 274) 531 130.0 4.7e-30
XP_011522242 (OMIM: 600174) PREDICTED: phosphatidy ( 197) 457 113.0 4.3e-25
XP_011522241 (OMIM: 600174) PREDICTED: phosphatidy ( 245) 375 94.4 2.2e-19
XP_016884196 (OMIM: 606876) PREDICTED: phosphatidy ( 206) 324 82.7 5.9e-16
>>NP_858057 (OMIM: 605134) cytoplasmic phosphatidylinosi (268 aa)
initn: 1860 init1: 1860 opt: 1860 Z-score: 2296.9 bits: 432.7 E(85289): 3.4e-121
Smith-Waterman score: 1860; 100.0% identity (100.0% similar) in 268 aa overlap (1-268:1-268)
10 20 30 40 50 60
pF1KE6 MLLKEYRICMPLTVDEYKIGQLYMISKHSHEQSDRGEGVEVVQNEPFEDPHHGNGQFTEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_858 MLLKEYRICMPLTVDEYKIGQLYMISKHSHEQSDRGEGVEVVQNEPFEDPHHGNGQFTEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 RVYLNSKLPSWARAVVPKIFYVTEKAWNYYPYTITEYTCSFLPKFSIHIETKYEDNKGSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_858 RVYLNSKLPSWARAVVPKIFYVTEKAWNYYPYTITEYTCSFLPKFSIHIETKYEDNKGSN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 DTIFDNEAKDVEREVCFIDIACDEIPERYYKESEDPKHFKSEKTGRGQLREGWRDSHQPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_858 DTIFDNEAKDVEREVCFIDIACDEIPERYYKESEDPKHFKSEKTGRGQLREGWRDSHQPI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 MCSYKLVTVKFEVWGLQTRVEQFVHKVVRDILLIGHRQAFAWVDEWYDMTMDDVREYEKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_858 MCSYKLVTVKFEVWGLQTRVEQFVHKVVRDILLIGHRQAFAWVDEWYDMTMDDVREYEKN
190 200 210 220 230 240
250 260
pF1KE6 MHEQTNIKVCNQHSSPVDDIESHAQTST
::::::::::::::::::::::::::::
NP_858 MHEQTNIKVCNQHSSPVDDIESHAQTST
250 260
>>XP_016879932 (OMIM: 605134) PREDICTED: cytoplasmic pho (258 aa)
initn: 1752 init1: 1752 opt: 1753 Z-score: 2165.4 bits: 408.3 E(85289): 7.1e-114
Smith-Waterman score: 1753; 98.1% identity (98.8% similar) in 259 aa overlap (10-268:1-258)
10 20 30 40 50 60
pF1KE6 MLLKEYRICMPLTVDEYKIGQLYMISKHSHEQSDRGEGVEVVQNEPFEDPHHGNGQFTEK
: .:. ::::::::::::::::::::::::::::::::::::::::::::
XP_016 MTFTI-LYKIGQLYMISKHSHEQSDRGEGVEVVQNEPFEDPHHGNGQFTEK
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 RVYLNSKLPSWARAVVPKIFYVTEKAWNYYPYTITEYTCSFLPKFSIHIETKYEDNKGSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RVYLNSKLPSWARAVVPKIFYVTEKAWNYYPYTITEYTCSFLPKFSIHIETKYEDNKGSN
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE6 DTIFDNEAKDVEREVCFIDIACDEIPERYYKESEDPKHFKSEKTGRGQLREGWRDSHQPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DTIFDNEAKDVEREVCFIDIACDEIPERYYKESEDPKHFKSEKTGRGQLREGWRDSHQPI
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE6 MCSYKLVTVKFEVWGLQTRVEQFVHKVVRDILLIGHRQAFAWVDEWYDMTMDDVREYEKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MCSYKLVTVKFEVWGLQTRVEQFVHKVVRDILLIGHRQAFAWVDEWYDMTMDDVREYEKN
180 190 200 210 220 230
250 260
pF1KE6 MHEQTNIKVCNQHSSPVDDIESHAQTST
::::::::::::::::::::::::::::
XP_016 MHEQTNIKVCNQHSSPVDDIESHAQTST
240 250
>>XP_016879933 (OMIM: 605134) PREDICTED: cytoplasmic pho (245 aa)
initn: 1705 init1: 1705 opt: 1705 Z-score: 2106.6 bits: 397.4 E(85289): 1.3e-110
Smith-Waterman score: 1705; 100.0% identity (100.0% similar) in 245 aa overlap (24-268:1-245)
10 20 30 40 50 60
pF1KE6 MLLKEYRICMPLTVDEYKIGQLYMISKHSHEQSDRGEGVEVVQNEPFEDPHHGNGQFTEK
:::::::::::::::::::::::::::::::::::::
XP_016 MISKHSHEQSDRGEGVEVVQNEPFEDPHHGNGQFTEK
10 20 30
70 80 90 100 110 120
pF1KE6 RVYLNSKLPSWARAVVPKIFYVTEKAWNYYPYTITEYTCSFLPKFSIHIETKYEDNKGSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RVYLNSKLPSWARAVVPKIFYVTEKAWNYYPYTITEYTCSFLPKFSIHIETKYEDNKGSN
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE6 DTIFDNEAKDVEREVCFIDIACDEIPERYYKESEDPKHFKSEKTGRGQLREGWRDSHQPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DTIFDNEAKDVEREVCFIDIACDEIPERYYKESEDPKHFKSEKTGRGQLREGWRDSHQPI
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE6 MCSYKLVTVKFEVWGLQTRVEQFVHKVVRDILLIGHRQAFAWVDEWYDMTMDDVREYEKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MCSYKLVTVKFEVWGLQTRVEQFVHKVVRDILLIGHRQAFAWVDEWYDMTMDDVREYEKN
160 170 180 190 200 210
250 260
pF1KE6 MHEQTNIKVCNQHSSPVDDIESHAQTST
::::::::::::::::::::::::::::
XP_016 MHEQTNIKVCNQHSSPVDDIESHAQTST
220 230 240
>>XP_016879934 (OMIM: 605134) PREDICTED: cytoplasmic pho (245 aa)
initn: 1705 init1: 1705 opt: 1705 Z-score: 2106.6 bits: 397.4 E(85289): 1.3e-110
Smith-Waterman score: 1705; 100.0% identity (100.0% similar) in 245 aa overlap (24-268:1-245)
10 20 30 40 50 60
pF1KE6 MLLKEYRICMPLTVDEYKIGQLYMISKHSHEQSDRGEGVEVVQNEPFEDPHHGNGQFTEK
:::::::::::::::::::::::::::::::::::::
XP_016 MISKHSHEQSDRGEGVEVVQNEPFEDPHHGNGQFTEK
10 20 30
70 80 90 100 110 120
pF1KE6 RVYLNSKLPSWARAVVPKIFYVTEKAWNYYPYTITEYTCSFLPKFSIHIETKYEDNKGSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RVYLNSKLPSWARAVVPKIFYVTEKAWNYYPYTITEYTCSFLPKFSIHIETKYEDNKGSN
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE6 DTIFDNEAKDVEREVCFIDIACDEIPERYYKESEDPKHFKSEKTGRGQLREGWRDSHQPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DTIFDNEAKDVEREVCFIDIACDEIPERYYKESEDPKHFKSEKTGRGQLREGWRDSHQPI
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE6 MCSYKLVTVKFEVWGLQTRVEQFVHKVVRDILLIGHRQAFAWVDEWYDMTMDDVREYEKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MCSYKLVTVKFEVWGLQTRVEQFVHKVVRDILLIGHRQAFAWVDEWYDMTMDDVREYEKN
160 170 180 190 200 210
250 260
pF1KE6 MHEQTNIKVCNQHSSPVDDIESHAQTST
::::::::::::::::::::::::::::
XP_016 MHEQTNIKVCNQHSSPVDDIESHAQTST
220 230 240
>>NP_036549 (OMIM: 605134) cytoplasmic phosphatidylinosi (332 aa)
initn: 1694 init1: 1674 opt: 1674 Z-score: 2066.5 bits: 390.4 E(85289): 2.3e-108
Smith-Waterman score: 1674; 96.4% identity (98.4% similar) in 249 aa overlap (1-249:1-249)
10 20 30 40 50 60
pF1KE6 MLLKEYRICMPLTVDEYKIGQLYMISKHSHEQSDRGEGVEVVQNEPFEDPHHGNGQFTEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MLLKEYRICMPLTVDEYKIGQLYMISKHSHEQSDRGEGVEVVQNEPFEDPHHGNGQFTEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 RVYLNSKLPSWARAVVPKIFYVTEKAWNYYPYTITEYTCSFLPKFSIHIETKYEDNKGSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 RVYLNSKLPSWARAVVPKIFYVTEKAWNYYPYTITEYTCSFLPKFSIHIETKYEDNKGSN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 DTIFDNEAKDVEREVCFIDIACDEIPERYYKESEDPKHFKSEKTGRGQLREGWRDSHQPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 DTIFDNEAKDVEREVCFIDIACDEIPERYYKESEDPKHFKSEKTGRGQLREGWRDSHQPI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 MCSYKLVTVKFEVWGLQTRVEQFVHKVVRDILLIGHRQAFAWVDEWYDMTMDDVREYEKN
::::::::::::::::::::::::::::::::::::::::::::::::::::.:::.:.
NP_036 MCSYKLVTVKFEVWGLQTRVEQFVHKVVRDILLIGHRQAFAWVDEWYDMTMDEVREFERA
190 200 210 220 230 240
250 260
pF1KE6 MHEQTNIKVCNQHSSPVDDIESHAQTST
.: :: :.
NP_036 TQEATNKKIGIFPPAISISSIPLLPSSVRSAPSSAPSTPLSTDAPEFLSVPKDRPRKKSA
250 260 270 280 290 300
>>XP_016879931 (OMIM: 605134) PREDICTED: cytoplasmic pho (322 aa)
initn: 1586 init1: 1566 opt: 1567 Z-score: 1935.0 bits: 366.0 E(85289): 4.8e-101
Smith-Waterman score: 1567; 94.2% identity (97.1% similar) in 240 aa overlap (10-249:1-239)
10 20 30 40 50 60
pF1KE6 MLLKEYRICMPLTVDEYKIGQLYMISKHSHEQSDRGEGVEVVQNEPFEDPHHGNGQFTEK
: .:. ::::::::::::::::::::::::::::::::::::::::::::
XP_016 MTFTI-LYKIGQLYMISKHSHEQSDRGEGVEVVQNEPFEDPHHGNGQFTEK
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 RVYLNSKLPSWARAVVPKIFYVTEKAWNYYPYTITEYTCSFLPKFSIHIETKYEDNKGSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RVYLNSKLPSWARAVVPKIFYVTEKAWNYYPYTITEYTCSFLPKFSIHIETKYEDNKGSN
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE6 DTIFDNEAKDVEREVCFIDIACDEIPERYYKESEDPKHFKSEKTGRGQLREGWRDSHQPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DTIFDNEAKDVEREVCFIDIACDEIPERYYKESEDPKHFKSEKTGRGQLREGWRDSHQPI
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE6 MCSYKLVTVKFEVWGLQTRVEQFVHKVVRDILLIGHRQAFAWVDEWYDMTMDDVREYEKN
::::::::::::::::::::::::::::::::::::::::::::::::::::.:::.:.
XP_016 MCSYKLVTVKFEVWGLQTRVEQFVHKVVRDILLIGHRQAFAWVDEWYDMTMDEVREFERA
180 190 200 210 220 230
250 260
pF1KE6 MHEQTNIKVCNQHSSPVDDIESHAQTST
.: :: :.
XP_016 TQEATNKKIGIFPPAISISSIPLLPSSVRSAPSSAPSTPLSTDAPEFLSVPKDRPRKKSA
240 250 260 270 280 290
>>XP_005257273 (OMIM: 605134) PREDICTED: cytoplasmic pho (309 aa)
initn: 1539 init1: 1519 opt: 1519 Z-score: 1876.2 bits: 355.1 E(85289): 9.2e-98
Smith-Waterman score: 1519; 96.0% identity (98.2% similar) in 226 aa overlap (24-249:1-226)
10 20 30 40 50 60
pF1KE6 MLLKEYRICMPLTVDEYKIGQLYMISKHSHEQSDRGEGVEVVQNEPFEDPHHGNGQFTEK
:::::::::::::::::::::::::::::::::::::
XP_005 MISKHSHEQSDRGEGVEVVQNEPFEDPHHGNGQFTEK
10 20 30
70 80 90 100 110 120
pF1KE6 RVYLNSKLPSWARAVVPKIFYVTEKAWNYYPYTITEYTCSFLPKFSIHIETKYEDNKGSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RVYLNSKLPSWARAVVPKIFYVTEKAWNYYPYTITEYTCSFLPKFSIHIETKYEDNKGSN
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE6 DTIFDNEAKDVEREVCFIDIACDEIPERYYKESEDPKHFKSEKTGRGQLREGWRDSHQPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DTIFDNEAKDVEREVCFIDIACDEIPERYYKESEDPKHFKSEKTGRGQLREGWRDSHQPI
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE6 MCSYKLVTVKFEVWGLQTRVEQFVHKVVRDILLIGHRQAFAWVDEWYDMTMDDVREYEKN
::::::::::::::::::::::::::::::::::::::::::::::::::::.:::.:.
XP_005 MCSYKLVTVKFEVWGLQTRVEQFVHKVVRDILLIGHRQAFAWVDEWYDMTMDEVREFERA
160 170 180 190 200 210
250 260
pF1KE6 MHEQTNIKVCNQHSSPVDDIESHAQTST
.: :: :.
XP_005 TQEATNKKIGIFPPAISISSIPLLPSSVRSAPSSAPSTPLSTDAPEFLSVPKDRPRKKSA
220 230 240 250 260 270
>>NP_001287730 (OMIM: 608920) membrane-associated phosph (1343 aa)
initn: 662 init1: 156 opt: 786 Z-score: 964.6 bits: 188.5 E(85289): 5.5e-47
Smith-Waterman score: 790; 41.5% identity (72.9% similar) in 277 aa overlap (1-267:1-277)
10 20 30 40 50
pF1KE6 MLLKEYRICMPLTVDEYKIGQLYMISKHSHEQS-DRGEGVEVVQNEPFEDPHHGNGQFTE
:..::::: .:.::.::.:.:::::.:.:.... .: :::...:.:. : :.::.:.
NP_001 MIIKEYRIPLPMTVEEYRIAQLYMIQKKSRNETYGEGSGVEILENRPYTDGPGGSGQYTH
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE6 KRVYLNSKLPSWARAVVPKI-FYVTEKAWNYYPYTITEYTCSFLPKFSIHIETKYEDNKG
: ... ..::: :...:: . :.:..:: :::: :..:: :. :::: ::: :. . :
NP_001 KVYHVGMHIPSWFRSILPKAALRVVEESWNAYPYTRTRFTCPFVEKFSIDIETFYKTDAG
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE6 SNDTIFD-NEAKDVEREVCFIDIACDEIPERYYKESEDPKHFKSEKTGRGQLREGWRDSH
: .:. . .. . . ::::. : .:. :: :::: :.: :: :: : :.: . .
NP_001 ENPDVFNLSPVEKNQLTIDFIDIVKDPVPHNEYKTEEDPKLFQSTKTQRGPLSENWIEEY
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE6 Q----PIMCSYKLVTVKFEVWGLQTRVEQFVHKV-VRDILLIGHRQAFAWVDEWYDMTMD
. ::::.::: :.:. ::.:...:.:.: . .: ... .::::. : :::: ..:.
NP_001 KKQVFPIMCAYKLCKVEFRYWGMQSKIERFIHDTGLRRVMVRAHRQAWCWQDEWYGLSME
190 200 210 220 230 240
240 250 260
pF1KE6 DVREYEKNMHEQTNIKVC--NQHSSPVDDIESHAQTST
..:: ::. . . . :. :. . . .. .: .:
NP_001 NIRELEKEAQLMLSRKMAQFNEDGEEATELVKHEAVSDQTSGEPPEPSSSNGEPLVGRGL
250 260 270 280 290 300
NP_001 KKQWSTSSKSSRSSKRGASPSRHSISEWRMQSIARDSDESSDDEFFDAHEDLSDTEEMFP
310 320 330 340 350 360
>>NP_065896 (OMIM: 608920) membrane-associated phosphati (1349 aa)
initn: 662 init1: 156 opt: 786 Z-score: 964.5 bits: 188.5 E(85289): 5.5e-47
Smith-Waterman score: 790; 41.5% identity (72.9% similar) in 277 aa overlap (1-267:1-277)
10 20 30 40 50
pF1KE6 MLLKEYRICMPLTVDEYKIGQLYMISKHSHEQS-DRGEGVEVVQNEPFEDPHHGNGQFTE
:..::::: .:.::.::.:.:::::.:.:.... .: :::...:.:. : :.::.:.
NP_065 MIIKEYRIPLPMTVEEYRIAQLYMIQKKSRNETYGEGSGVEILENRPYTDGPGGSGQYTH
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE6 KRVYLNSKLPSWARAVVPKI-FYVTEKAWNYYPYTITEYTCSFLPKFSIHIETKYEDNKG
: ... ..::: :...:: . :.:..:: :::: :..:: :. :::: ::: :. . :
NP_065 KVYHVGMHIPSWFRSILPKAALRVVEESWNAYPYTRTRFTCPFVEKFSIDIETFYKTDAG
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE6 SNDTIFD-NEAKDVEREVCFIDIACDEIPERYYKESEDPKHFKSEKTGRGQLREGWRDSH
: .:. . .. . . ::::. : .:. :: :::: :.: :: :: : :.: . .
NP_065 ENPDVFNLSPVEKNQLTIDFIDIVKDPVPHNEYKTEEDPKLFQSTKTQRGPLSENWIEEY
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE6 Q----PIMCSYKLVTVKFEVWGLQTRVEQFVHKV-VRDILLIGHRQAFAWVDEWYDMTMD
. ::::.::: :.:. ::.:...:.:.: . .: ... .::::. : :::: ..:.
NP_065 KKQVFPIMCAYKLCKVEFRYWGMQSKIERFIHDTGLRRVMVRAHRQAWCWQDEWYGLSME
190 200 210 220 230 240
240 250 260
pF1KE6 DVREYEKNMHEQTNIKVC--NQHSSPVDDIESHAQTST
..:: ::. . . . :. :. . . .. .: .:
NP_065 NIRELEKEAQLMLSRKMAQFNEDGEEATELVKHEAVSDQTSGEPPEPSSSNGEPLVGRGL
250 260 270 280 290 300
NP_065 KKQWSTSSKSSRSSKRGASPSRHSISEWRMQSIARDSDESSDDEFFDAHEDLSDTEEMFP
310 320 330 340 350 360
>>XP_011543698 (OMIM: 608794) PREDICTED: membrane-associ (1243 aa)
initn: 602 init1: 163 opt: 762 Z-score: 935.5 bits: 183.0 E(85289): 2.3e-45
Smith-Waterman score: 764; 44.7% identity (72.3% similar) in 264 aa overlap (1-254:1-263)
10 20 30 40 50
pF1KE6 MLLKEYRICMPLTVDEYKIGQLYMISKHSHEQSD-RGEGVEVVQNEPFEDPHHGNGQFTE
::.:::.: .:...:::...:::::.:.:.:.:. .: :::.. :.:. : :.::.:.
XP_011 MLIKEYHILLPMSLDEYQVAQLYMIQKKSREESSGEGSGVEILANRPYTDGPGGSGQYTH
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE6 KRVYLNSKLPSWARAVVPKI-FYVTEKAWNYYPYTITEYTCSFLPKFSIHIETKYEDNKG
: ...:..:.: ::..:: . : :..:: :::: :.::: :. ::::.::: : . :
XP_011 KVYHVGSHIPGWFRALLPKAALQVEEESWNAYPYTRTRYTCPFVEKFSIEIETYYLPDGG
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE6 SNDTIFD-NEAKDVEREVCFIDIACDEIPERYYKESEDPKHFKSEKTGRGQLREGW-RDS
.. ..:. . :. .: . :::. : . :: :::. ..: ::::: : . : : .
XP_011 QQPNVFNLSGAERRQRILDTIDIVRDAVAPGEYKAEEDPRLYHSVKTGRGPLSDDWARTA
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE6 HQ--PIMCSYKLVTVKFEVWGLQTRVEQFVHKV-VRDILLIGHRQAFAWVDEWYDMTMDD
: :.::.::: :.:. ::.:...:::.: : .: ..: .::::. : ::: ...: :
XP_011 AQTGPLMCAYKLCKVEFRYWGMQAKIEQFIHDVGLRRVMLRAHRQAWCWQDEWTELSMAD
190 200 210 220 230 240
240 250 260
pF1KE6 VREYEKN---MHEQTNIKVCNQHSSPVDDIESHAQTST
.: :.. : : : :: :
XP_011 IRALEEETARMLAQRMAK-CNTGSEGSEAQPPGKPSTEARSAASNTGTPDGPEAPPGPDA
250 260 270 280 290
268 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 11:46:28 2016 done: Tue Nov 8 11:46:29 2016
Total Scan time: 4.590 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]