FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5663, 519 aa
  1>>>pF1KE5663 519 - 519 aa - 519 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1335+/-0.000432; mu= 19.2614+/- 0.027
 mean_var=67.0796+/-13.210, 0's: 0 Z-trim(109.1): 19  B-trim: 0 in 0/52
 Lambda= 0.156595
 statistics sampled from 17269 (17274) to 17269 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.57), E-opt: 0.2 (0.203), width:  16
 Scan time:  8.300

The best scores are:                                      opt bits E(85289)
NP_056991 (OMIM: 170250) cytosol aminopeptidase [H ( 519) 3410 780.0       0


>>NP_056991 (OMIM: 170250) cytosol aminopeptidase [Homo   (519 aa)
 initn: 3410 init1: 3410 opt: 3410  Z-score: 4163.3  bits: 780.0 E(85289):    0
Smith-Waterman score: 3410; 100.0% identity (100.0% similar) in 519 aa overlap (1-519:1-519)

               10        20        30        40        50        60
pF1KE5 MFLLPLPAAGRVVVRRLAVRRFGSRSLSTADMTKGLVLGIYSKEKEDDVPQFTSAGENFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MFLLPLPAAGRVVVRRLAVRRFGSRSLSTADMTKGLVLGIYSKEKEDDVPQFTSAGENFD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 KLLAGKLRETLNISGPPLKAGKTRTFYGLHQDFPSVVLVGLGKKAAGIDEQENWHEGKEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 KLLAGKLRETLNISGPPLKAGKTRTFYGLHQDFPSVVLVGLGKKAAGIDEQENWHEGKEN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 IRAAVAAGCRQIQDLELSSVEVDPCGDAQAAAEGAVLGLYEYDDLKQKKKMAVSAKLYGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 IRAAVAAGCRQIQDLELSSVEVDPCGDAQAAAEGAVLGLYEYDDLKQKKKMAVSAKLYGS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 GDQEAWQKGVLFASGQNLARQLMETPANEMTPTRFAEIIEKNLKSASSKTEVHIRPKSWI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 GDQEAWQKGVLFASGQNLARQLMETPANEMTPTRFAEIIEKNLKSASSKTEVHIRPKSWI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 EEQAMGSFLSVAKGSDEPPVFLEIHYKGSPNANEPPLVFVGKGITFDSGGISIKASANMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 EEQAMGSFLSVAKGSDEPPVFLEIHYKGSPNANEPPLVFVGKGITFDSGGISIKASANMD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 LMRADMGGAATICSAIVSAAKLNLPINIIGLAPLCENMPSGKANKPGDVVRAKNGKTIQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 LMRADMGGAATICSAIVSAAKLNLPINIIGLAPLCENMPSGKANKPGDVVRAKNGKTIQV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 DNTDAEGRLILADALCYAHTFNPKVILNAATLTGAMDVALGSGATGVFTNSSWLWNKLFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 DNTDAEGRLILADALCYAHTFNPKVILNAATLTGAMDVALGSGATGVFTNSSWLWNKLFE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE5 ASIETGDRVWRMPLFEHYTRQVVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 ASIETGDRVWRMPLFEHYTRQVVDCQLADVNNIGKYRSAGACTAAAFLKEFVTHPKWAHL
              430       440       450       460       470       480

              490       500       510         
pF1KE5 DIAGVMTNKDEVPYLRKGMTGRPTRTLIEFLLRFSQDNA
       :::::::::::::::::::::::::::::::::::::::
NP_056 DIAGVMTNKDEVPYLRKGMTGRPTRTLIEFLLRFSQDNA
              490       500       510         




519 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 05:39:16 2016 done: Tue Nov  8 05:39:17 2016
 Total Scan time:  8.300 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]