FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6653, 248 aa
  1>>>pF1KE6653 248 - 248 aa - 248 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7399+/-0.000697; mu= 8.8537+/- 0.042
 mean_var=107.0594+/-21.390, 0's: 0 Z-trim(113.0): 14  B-trim: 143 in 1/50
 Lambda= 0.123954
 statistics sampled from 13714 (13724) to 13714 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.776), E-opt: 0.2 (0.422), width:  16
 Scan time:  2.570

The best scores are:                                      opt bits E(32554)
CCDS56016.1 FAM64A gene_id:54478|Hs108|chr17       ( 248) 1643 303.6 8.3e-83
CCDS32541.1 FAM64A gene_id:54478|Hs108|chr17       ( 238) 1515 280.7 6.2e-76


>>CCDS56016.1 FAM64A gene_id:54478|Hs108|chr17            (248 aa)
 initn: 1643 init1: 1643 opt: 1643  Z-score: 1600.2  bits: 303.6 E(32554): 8.3e-83
Smith-Waterman score: 1643; 100.0% identity (100.0% similar) in 248 aa overlap (1-248:1-248)

               10        20        30        40        50        60
pF1KE6 MASRWQNMGTSVRRRSLQHQEQLEDSKELQPVVSHQETSVGALGSLCRQFQRRLPLRAVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MASRWQNMGTSVRRRSLQHQEQLEDSKELQPVVSHQETSVGALGSLCRQFQRRLPLRAVN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 LNLRAGPSWKRLETPEPGQQGLQAAARSAKSALGAVSQRIQESCQSGTKWLVETQVKARR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 LNLRAGPSWKRLETPEPGQQGLQAAARSAKSALGAVSQRIQESCQSGTKWLVETQVKARR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 RKRGAQKGSGSPTHSLSQKSTRLSGAAPAHSAADPWEKEHHRLSVRMGSHAHPLRRSRRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 RKRGAQKGSGSPTHSLSQKSTRLSGAAPAHSAADPWEKEHHRLSVRMGSHAHPLRRSRRE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 AAFRSPYSSTEPLCSPSESDSDLEPVGAGIQHLQKLSQELDEAIMAEERKQALSDRQGFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 AAFRSPYSSTEPLCSPSESDSDLEPVGAGIQHLQKLSQELDEAIMAEERKQALSDRQGFI
              190       200       210       220       230       240

               
pF1KE6 LKDVYASP
       ::::::::
CCDS56 LKDVYASP
               

>>CCDS32541.1 FAM64A gene_id:54478|Hs108|chr17            (238 aa)
 initn: 1515 init1: 1515 opt: 1515  Z-score: 1476.7  bits: 280.7 E(32554): 6.2e-76
Smith-Waterman score: 1515; 97.9% identity (98.7% similar) in 234 aa overlap (1-234:1-234)

               10        20        30        40        50        60
pF1KE6 MASRWQNMGTSVRRRSLQHQEQLEDSKELQPVVSHQETSVGALGSLCRQFQRRLPLRAVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MASRWQNMGTSVRRRSLQHQEQLEDSKELQPVVSHQETSVGALGSLCRQFQRRLPLRAVN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 LNLRAGPSWKRLETPEPGQQGLQAAARSAKSALGAVSQRIQESCQSGTKWLVETQVKARR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LNLRAGPSWKRLETPEPGQQGLQAAARSAKSALGAVSQRIQESCQSGTKWLVETQVKARR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 RKRGAQKGSGSPTHSLSQKSTRLSGAAPAHSAADPWEKEHHRLSVRMGSHAHPLRRSRRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RKRGAQKGSGSPTHSLSQKSTRLSGAAPAHSAADPWEKEHHRLSVRMGSHAHPLRRSRRE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 AAFRSPYSSTEPLCSPSESDSDLEPVGAGIQHLQKLSQELDEAIMAEERKQALSDRQGFI
       ::::::::::::::::::::::::::::::::::::::::::::::::  . .:      
CCDS32 AAFRSPYSSTEPLCSPSESDSDLEPVGAGIQHLQKLSQELDEAIMAEESGDIVSLIHD  
              190       200       210       220       230          

               
pF1KE6 LKDVYASP




248 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 15:09:06 2016 done: Tue Nov  8 15:09:06 2016
 Total Scan time:  2.570 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]