FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5569, 446 aa
  1>>>pF1KE5569 446 - 446 aa - 446 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.8077+/-0.00114; mu= -4.3415+/- 0.068
 mean_var=433.5882+/-87.849, 0's: 0 Z-trim(114.2): 27  B-trim: 0 in 0/55
 Lambda= 0.061594
 statistics sampled from 14746 (14756) to 14746 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.768), E-opt: 0.2 (0.453), width:  16
 Scan time:  3.280

The best scores are:                                      opt bits E(32554)
CCDS14116.1 AKAP17A gene_id:8227|Hs108|chrY        ( 695) 2484 235.0 1.8e-61
CCDS14116.1 AKAP17A gene_id:8227|Hs108|chrX        ( 695) 2484 235.0 1.8e-61


>>CCDS14116.1 AKAP17A gene_id:8227|Hs108|chrY             (695 aa)
 initn: 2510 init1: 2484 opt: 2484  Z-score: 1217.2  bits: 235.0 E(32554): 1.8e-61
Smith-Waterman score: 2484; 99.7% identity (99.7% similar) in 384 aa overlap (1-384:1-384)

               10        20        30        40        50        60
pF1KE5 MAAATIVHDTSEAVELCPAYGLYLKPITKMTISVALPQLKQPGKSISNWEVMERLKGMVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MAAATIVHDTSEAVELCPAYGLYLKPITKMTISVALPQLKQPGKSISNWEVMERLKGMVQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 NHQFSTLRISKSTMDFIRFEGEVENKSLVKSFLACLDGKTIKLSGFSDILKVRAAEFKID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 NHQFSTLRISKSTMDFIRFEGEVENKSLVKSFLACLDGKTIKLSGFSDILKVRAAEFKID
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 FPTRHDWDSFFRDAKDMNETLPGERPDTIHLEGLPCKWFALKESGSEKPSEDVLVKVFEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 FPTRHDWDSFFRDAKDMNETLPGERPDTIHLEGLPCKWFALKESGSEKPSEDVLVKVFEK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 FGEIRNVDIPMLDSYREEMTGRNFHTFSFGGHLNFEAYVQYREYMGFIQAMSALRGMKLM
       ::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 FGEIRNVDIPMLDPYREEMTGRNFHTFSFGGHLNFEAYVQYREYMGFIQAMSALRGMKLM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 YKGEDGKAVACNIKVSFDSTKHLSDASIKKRQLERQKLQELEQQREEQKRREKEAEERQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 YKGEDGKAVACNIKVSFDSTKHLSDASIKKRQLERQKLQELEQQREEQKRREKEAEERQR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 AEERKQKELEELERERKREEKLRKREQKQRDRELRRNQKKLEKLQAEEQKQLQEKIKLEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 AEERKQKELEELERERKREEKLRKREQKQRDRELRRNQKKLEKLQAEEQKQLQEKIKLEE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 RKLLLAQRNLQSIRLIAELLSRAKVPGGSLCSRQPRPGCPQCPPLKCGRRHGAVSPPAAA
       ::::::::::::::::::::::::                                    
CCDS14 RKLLLAQRNLQSIRLIAELLSRAKAVKLREQEQKEEKLRLQQQEERRRLQEAELRRVEEE
              370       380       390       400       410       420

>>CCDS14116.1 AKAP17A gene_id:8227|Hs108|chrX             (695 aa)
 initn: 2510 init1: 2484 opt: 2484  Z-score: 1217.2  bits: 235.0 E(32554): 1.8e-61
Smith-Waterman score: 2484; 99.7% identity (99.7% similar) in 384 aa overlap (1-384:1-384)

               10        20        30        40        50        60
pF1KE5 MAAATIVHDTSEAVELCPAYGLYLKPITKMTISVALPQLKQPGKSISNWEVMERLKGMVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MAAATIVHDTSEAVELCPAYGLYLKPITKMTISVALPQLKQPGKSISNWEVMERLKGMVQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 NHQFSTLRISKSTMDFIRFEGEVENKSLVKSFLACLDGKTIKLSGFSDILKVRAAEFKID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 NHQFSTLRISKSTMDFIRFEGEVENKSLVKSFLACLDGKTIKLSGFSDILKVRAAEFKID
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 FPTRHDWDSFFRDAKDMNETLPGERPDTIHLEGLPCKWFALKESGSEKPSEDVLVKVFEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 FPTRHDWDSFFRDAKDMNETLPGERPDTIHLEGLPCKWFALKESGSEKPSEDVLVKVFEK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 FGEIRNVDIPMLDSYREEMTGRNFHTFSFGGHLNFEAYVQYREYMGFIQAMSALRGMKLM
       ::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 FGEIRNVDIPMLDPYREEMTGRNFHTFSFGGHLNFEAYVQYREYMGFIQAMSALRGMKLM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 YKGEDGKAVACNIKVSFDSTKHLSDASIKKRQLERQKLQELEQQREEQKRREKEAEERQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 YKGEDGKAVACNIKVSFDSTKHLSDASIKKRQLERQKLQELEQQREEQKRREKEAEERQR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 AEERKQKELEELERERKREEKLRKREQKQRDRELRRNQKKLEKLQAEEQKQLQEKIKLEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 AEERKQKELEELERERKREEKLRKREQKQRDRELRRNQKKLEKLQAEEQKQLQEKIKLEE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 RKLLLAQRNLQSIRLIAELLSRAKVPGGSLCSRQPRPGCPQCPPLKCGRRHGAVSPPAAA
       ::::::::::::::::::::::::                                    
CCDS14 RKLLLAQRNLQSIRLIAELLSRAKAVKLREQEQKEEKLRLQQQEERRRLQEAELRRVEEE
              370       380       390       400       410       420




446 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 01:55:51 2016 done: Tue Nov  8 01:55:52 2016
 Total Scan time:  3.280 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]