Result of FASTA (ccds) for
pFN21AE6671
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6671, 296 aa
1>>>pF1KE6671 296 - 296 aa - 296 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2787+/-0.000888; mu= 16.1059+/- 0.053
mean_var=78.7817+/-15.920, 0's: 0 Z-trim(107.3): 81 B-trim: 319 in 1/52
Lambda= 0.144498
statistics sampled from 9438 (9522) to 9438 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.292), width: 16
Scan time: 1.870
The best scores are: opt bits E(32554)
CCDS53442.1 MR1 gene_id:3140|Hs108|chr1 ( 296) 2049 436.6 1.1e-122
CCDS1342.1 MR1 gene_id:3140|Hs108|chr1 ( 341) 1295 279.4 2.5e-75
CCDS53441.1 MR1 gene_id:3140|Hs108|chr1 ( 214) 761 167.9 5.8e-42
CCDS53440.1 MR1 gene_id:3140|Hs108|chr1 ( 249) 759 167.6 8.6e-42
CCDS34373.1 A gene_id:3105|Hs108|chr6 ( 365) 454 104.1 1.6e-22
CCDS43438.1 F gene_id:3134|Hs108|chr6 ( 346) 450 103.3 2.7e-22
CCDS43437.1 F gene_id:3134|Hs108|chr6 ( 442) 450 103.4 3.3e-22
CCDS4668.1 G gene_id:3135|Hs108|chr6 ( 338) 436 100.3 2e-21
CCDS34394.1 B gene_id:3106|Hs108|chr6 ( 362) 426 98.3 9.1e-21
CCDS34393.1 C gene_id:3107|Hs108|chr6 ( 366) 416 96.2 3.9e-20
CCDS34379.1 E gene_id:3133|Hs108|chr6 ( 358) 408 94.5 1.2e-19
CCDS75422.1 MICB gene_id:4277|Hs108|chr6 ( 340) 394 91.6 8.8e-19
CCDS4580.1 HFE gene_id:3077|Hs108|chr6 ( 260) 382 89.0 4.1e-18
CCDS47387.1 HFE gene_id:3077|Hs108|chr6 ( 325) 382 89.1 4.8e-18
CCDS5680.1 AZGP1 gene_id:563|Hs108|chr7 ( 298) 370 86.5 2.6e-17
CCDS12770.1 FCGRT gene_id:2217|Hs108|chr19 ( 365) 317 75.6 6.3e-14
CCDS4581.1 HFE gene_id:3077|Hs108|chr6 ( 168) 305 72.8 2e-13
CCDS75421.1 MICA gene_id:100507436|Hs108|chr6 ( 235) 301 72.1 4.6e-13
CCDS56412.1 MICA gene_id:100507436|Hs108|chr6 ( 332) 301 72.2 5.9e-13
CCDS75423.1 MICB gene_id:4277|Hs108|chr6 ( 351) 299 71.8 8.3e-13
CCDS43449.1 MICB gene_id:4277|Hs108|chr6 ( 383) 299 71.8 8.8e-13
CCDS54975.1 HFE gene_id:3077|Hs108|chr6 ( 246) 280 67.7 9.8e-12
CCDS1174.1 CD1A gene_id:909|Hs108|chr1 ( 327) 275 66.8 2.5e-11
>>CCDS53442.1 MR1 gene_id:3140|Hs108|chr1 (296 aa)
initn: 2049 init1: 2049 opt: 2049 Z-score: 2316.1 bits: 436.6 E(32554): 1.1e-122
Smith-Waterman score: 2049; 100.0% identity (100.0% similar) in 296 aa overlap (1-296:1-296)
10 20 30 40 50 60
pF1KE6 MGELMAFLLPLIIVLMVKHSDSRTHSLRYFRLGVSDPIHGVPEFISVGYVDSHPITTYDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MGELMAFLLPLIIVLMVKHSDSRTHSLRYFRLGVSDPIHGVPEFISVGYVDSHPITTYDS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 VTRQKEPRAPWMAENLAPDHWERYTQLLRGWQQMFKVELKRLQRHYNHSDNVAHTIKQAW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VTRQKEPRAPWMAENLAPDHWERYTQLLRGWQQMFKVELKRLQRHYNHSDNVAHTIKQAW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 EANQHELLYQKNWLEEECIAWLKRFLEYGKDTLQRTEPPLVRVNRKETFPGVTALFCKAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 EANQHELLYQKNWLEEECIAWLKRFLEYGKDTLQRTEPPLVRVNRKETFPGVTALFCKAH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE6 GFYPPEIYMTWMKNGEEIVQEIDYGDILPSGDGTYQAWASIELDPQSSNLYSCHVEHCGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GFYPPEIYMTWMKNGEEIVQEIDYGDILPSGDGTYQAWASIELDPQSSNLYSCHVEHCGV
190 200 210 220 230 240
250 260 270 280 290
pF1KE6 HMVLQVPQESETIPLVMKAVSGSIVLVIVLAGVGVLVWRRRPREQNGAIYLPTPDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 HMVLQVPQESETIPLVMKAVSGSIVLVIVLAGVGVLVWRRRPREQNGAIYLPTPDR
250 260 270 280 290
>>CCDS1342.1 MR1 gene_id:3140|Hs108|chr1 (341 aa)
initn: 2035 init1: 1295 opt: 1295 Z-score: 1465.8 bits: 279.4 E(32554): 2.5e-75
Smith-Waterman score: 1868; 86.3% identity (86.3% similar) in 328 aa overlap (14-296:14-341)
10 20 30 40 50 60
pF1KE6 MGELMAFLLPLIIVLMVKHSDSRTHSLRYFRLGVSDPIHGVPEFISVGYVDSHPITTYDS
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MGELMAFLLPLIIVLMVKHSDSRTHSLRYFRLGVSDPIHGVPEFISVGYVDSHPITTYDS
10 20 30 40 50 60
70 80 90 100
pF1KE6 VTRQKEPRAPWMAENLAPDHWERYTQLLRGWQQMFKVELKRLQRHYNHS-----------
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VTRQKEPRAPWMAENLAPDHWERYTQLLRGWQQMFKVELKRLQRHYNHSGSHTYQRMIGC
70 80 90 100 110 120
110 120 130
pF1KE6 ----------------------------------DNVAHTIKQAWEANQHELLYQKNWLE
::::::::::::::::::::::::::
CCDS13 ELLEDGSTTGFLQYAYDGQDFLIFNKDTLSWLAVDNVAHTIKQAWEANQHELLYQKNWLE
130 140 150 160 170 180
140 150 160 170 180 190
pF1KE6 EECIAWLKRFLEYGKDTLQRTEPPLVRVNRKETFPGVTALFCKAHGFYPPEIYMTWMKNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EECIAWLKRFLEYGKDTLQRTEPPLVRVNRKETFPGVTALFCKAHGFYPPEIYMTWMKNG
190 200 210 220 230 240
200 210 220 230 240 250
pF1KE6 EEIVQEIDYGDILPSGDGTYQAWASIELDPQSSNLYSCHVEHCGVHMVLQVPQESETIPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EEIVQEIDYGDILPSGDGTYQAWASIELDPQSSNLYSCHVEHCGVHMVLQVPQESETIPL
250 260 270 280 290 300
260 270 280 290
pF1KE6 VMKAVSGSIVLVIVLAGVGVLVWRRRPREQNGAIYLPTPDR
:::::::::::::::::::::::::::::::::::::::::
CCDS13 VMKAVSGSIVLVIVLAGVGVLVWRRRPREQNGAIYLPTPDR
310 320 330 340
>>CCDS53441.1 MR1 gene_id:3140|Hs108|chr1 (214 aa)
initn: 1075 init1: 754 opt: 761 Z-score: 866.9 bits: 167.9 E(32554): 5.8e-42
Smith-Waterman score: 989; 77.7% identity (77.7% similar) in 202 aa overlap (1-157:1-202)
10 20 30 40 50 60
pF1KE6 MGELMAFLLPLIIVLMVKHSDSRTHSLRYFRLGVSDPIHGVPEFISVGYVDSHPITTYDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MGELMAFLLPLIIVLMVKHSDSRTHSLRYFRLGVSDPIHGVPEFISVGYVDSHPITTYDS
10 20 30 40 50 60
70 80 90 100
pF1KE6 VTRQKEPRAPWMAENLAPDHWERYTQLLRGWQQMFKVELKRLQRHYNHS-----------
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VTRQKEPRAPWMAENLAPDHWERYTQLLRGWQQMFKVELKRLQRHYNHSGSHTYQRMIGC
70 80 90 100 110 120
110 120 130
pF1KE6 ----------------------------------DNVAHTIKQAWEANQHELLYQKNWLE
::::::::::::::::::::::::::
CCDS53 ELLEDGSTTGFLQYAYDGQDFLIFNKDTLSWLAVDNVAHTIKQAWEANQHELLYQKNWLE
130 140 150 160 170 180
140 150 160 170 180 190
pF1KE6 EECIAWLKRFLEYGKDTLQRTEPPLVRVNRKETFPGVTALFCKAHGFYPPEIYMTWMKNG
::::::::::::::::::::::
CCDS53 EECIAWLKRFLEYGKDTLQRTEQNGAIYLPTPDR
190 200 210
>>CCDS53440.1 MR1 gene_id:3140|Hs108|chr1 (249 aa)
initn: 1076 init1: 754 opt: 759 Z-score: 863.7 bits: 167.6 E(32554): 8.6e-42
Smith-Waterman score: 1097; 59.8% identity (59.8% similar) in 341 aa overlap (1-296:1-249)
10 20 30 40 50 60
pF1KE6 MGELMAFLLPLIIVLMVKHSDSRTHSLRYFRLGVSDPIHGVPEFISVGYVDSHPITTYDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MGELMAFLLPLIIVLMVKHSDSRTHSLRYFRLGVSDPIHGVPEFISVGYVDSHPITTYDS
10 20 30 40 50 60
70 80 90 100
pF1KE6 VTRQKEPRAPWMAENLAPDHWERYTQLLRGWQQMFKVELKRLQRHYNHS-----------
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VTRQKEPRAPWMAENLAPDHWERYTQLLRGWQQMFKVELKRLQRHYNHSGSHTYQRMIGC
70 80 90 100 110 120
110 120 130
pF1KE6 ----------------------------------DNVAHTIKQAWEANQHELLYQKNWLE
::::::::::::::::::::::::::
CCDS53 ELLEDGSTTGFLQYAYDGQDFLIFNKDTLSWLAVDNVAHTIKQAWEANQHELLYQKNWLE
130 140 150 160 170 180
140 150 160 170 180 190
pF1KE6 EECIAWLKRFLEYGKDTLQRTEPPLVRVNRKETFPGVTALFCKAHGFYPPEIYMTWMKNG
::::::::::::::::::::::
CCDS53 EECIAWLKRFLEYGKDTLQRTE--------------------------------------
190 200
200 210 220 230 240 250
pF1KE6 EEIVQEIDYGDILPSGDGTYQAWASIELDPQSSNLYSCHVEHCGVHMVLQVPQESETIPL
::::::
CCDS53 ------------------------------------------------------SETIPL
260 270 280 290
pF1KE6 VMKAVSGSIVLVIVLAGVGVLVWRRRPREQNGAIYLPTPDR
:::::::::::::::::::::::::::::::::::::::::
CCDS53 VMKAVSGSIVLVIVLAGVGVLVWRRRPREQNGAIYLPTPDR
210 220 230 240
>>CCDS34373.1 A gene_id:3105|Hs108|chr6 (365 aa)
initn: 569 init1: 348 opt: 454 Z-score: 517.8 bits: 104.1 E(32554): 1.6e-22
Smith-Waterman score: 580; 32.6% identity (59.3% similar) in 322 aa overlap (24-290:26-344)
10 20 30 40 50
pF1KE6 MGELMAFLLPLIIVLMVKHSDSRTHSLRYFRLGVSDPIHGVPEFISVGYVDSHPITTY
.::.::: .:: : .: :.::.:::::. .. .
CCDS34 MAVMAPRTLLLLLSGALALTQTWAGSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE6 DS--VTRQKEPRAPWMAENLAPDHWERYTQLLRGWQQMFKVELKRLQRHYNHSDNVAHTI
:: .... ::::::. :. .:..:.. :. ... .: .:.: :. .::.:. .:::
CCDS34 DSDAASQRMEPRAPWI-EQEGPEYWDQETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTI
70 80 90 100 110
120
pF1KE6 ------------------------------------------------KQAWEANQHELL
:. ::: ::
CCDS34 QIMYGCDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMAAQITKRKWEAA-HEAE
120 130 140 150 160 170
130 140 150 160 170 180
pF1KE6 YQKNWLEEECIAWLKRFLEYGKDTLQRTEPPLVRVNRKETFPGVTALFCKAHGFYPPEIY
. .:. :. ::.:.:: ::.:::::.:: ...... ..: : : :::: ::
CCDS34 QLRAYLDGTCVEWLRRYLENGKETLQRTDPPKTHMTHHPISDHEATLRCWALGFYPAEIT
180 190 200 210 220 230
190 200 210 220 230 240
pF1KE6 MTWMKNGEEIVQEIDYGDILPSGDGTYQAWASIELDPQSSNLYSCHVEHCGVHMVLQVPQ
.::...::. .:. . . :.::::.: ::.. . . :.:::.: :. : .
CCDS34 LTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRW
240 250 260 270 280 290
250 260 270 280 290
pF1KE6 E---SETIPLVMKAVSGSIVLVIVLAG--VGVLVWRRRPREQNGAIYLPTPDR
: . :::.: ..: ..: :..: :....:::. ...:. :
CCDS34 ELSSQPTIPIV-GIIAGLVLLGAVITGAVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSD
300 310 320 330 340 350
CCDS34 VSLTACKV
360
>>CCDS43438.1 F gene_id:3134|Hs108|chr6 (346 aa)
initn: 546 init1: 341 opt: 450 Z-score: 513.7 bits: 103.3 E(32554): 2.7e-22
Smith-Waterman score: 542; 32.9% identity (58.4% similar) in 322 aa overlap (24-290:23-341)
10 20 30 40 50 60
pF1KE6 MGELMAFLLPLIIVLMVKHSDSRTHSLRYFRLGVSDPIHGVPEFISVGYVDSHPITTYDS
.:::::: .:: : .: :..:.: :::. . .::
CCDS43 MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDS
10 20 30 40 50
70 80 90 100 110
pF1KE6 ---VTRQKEPRAPWMAENLAPDHWERYTQLLRGWQQMFKVELKRLQRHYNHSDNVAHTIK
. :. ::: ::. :. .:..:: : .. : .: :. : :.::.:. .::..
CCDS43 DAAIPRM-EPREPWV-EQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQ
60 70 80 90 100 110
120 130
pF1KE6 ----------------------------------QAWEANQH-----ELLYQ--------
..: : . . .:.
CCDS43 GMNGCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEF
120 130 140 150 160 170
140 150 160 170 180 190
pF1KE6 KNWLEEECIAWLKRFLEYGKDTLQRTEPPLVRVNRKETFPGVTALFCKAHGFYPPEIYMT
...:: ::. :.:.:: ::.::::..:: ..: .. ..: : : :::: :: .:
CCDS43 RTYLEGECLELLRRYLENGKETLQRADPPKAHVAHHPISDHEATLRCWALGFYPAEITLT
180 190 200 210 220 230
200 210 220 230 240
pF1KE6 WMKNGEEIVQEIDYGDILPSGDGTYQAWASIELDPQSSNLYSCHVEHCGVH--MVLQVPQ
:...::: .:. . . :.::::.: ::.. . : . :.:::.: :. ..:. :
CCDS43 WQRDGEEQTQDTELVETRPAGDGTFQKWAAVVVPPGEEQRYTCHVQHEGLPQPLILRWEQ
240 250 260 270 280 290
250 260 270 280 290
pF1KE6 ESE-TIPLVMKAVSGSIVLVIVLAG--VGVLVWRRRPREQNGAIYLPTPDR
. :::.: :.: .:: :..: :....::.. ..: . :
CCDS43 SPQPTIPIV-GIVAGLVVLGAVVTGAVVAAVMWRKKSSDRNRGSYSQAAV
300 310 320 330 340
>>CCDS43437.1 F gene_id:3134|Hs108|chr6 (442 aa)
initn: 546 init1: 341 opt: 450 Z-score: 512.2 bits: 103.4 E(32554): 3.3e-22
Smith-Waterman score: 542; 32.9% identity (58.4% similar) in 322 aa overlap (24-290:23-341)
10 20 30 40 50 60
pF1KE6 MGELMAFLLPLIIVLMVKHSDSRTHSLRYFRLGVSDPIHGVPEFISVGYVDSHPITTYDS
.:::::: .:: : .: :..:.: :::. . .::
CCDS43 MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDS
10 20 30 40 50
70 80 90 100 110
pF1KE6 ---VTRQKEPRAPWMAENLAPDHWERYTQLLRGWQQMFKVELKRLQRHYNHSDNVAHTIK
. :. ::: ::. :. .:..:: : .. : .: :. : :.::.:. .::..
CCDS43 DAAIPRM-EPREPWV-EQEGPQYWEWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQ
60 70 80 90 100 110
120 130
pF1KE6 ----------------------------------QAWEANQH-----ELLYQ--------
..: : . . .:.
CCDS43 GMNGCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEF
120 130 140 150 160 170
140 150 160 170 180 190
pF1KE6 KNWLEEECIAWLKRFLEYGKDTLQRTEPPLVRVNRKETFPGVTALFCKAHGFYPPEIYMT
...:: ::. :.:.:: ::.::::..:: ..: .. ..: : : :::: :: .:
CCDS43 RTYLEGECLELLRRYLENGKETLQRADPPKAHVAHHPISDHEATLRCWALGFYPAEITLT
180 190 200 210 220 230
200 210 220 230 240
pF1KE6 WMKNGEEIVQEIDYGDILPSGDGTYQAWASIELDPQSSNLYSCHVEHCGVH--MVLQVPQ
:...::: .:. . . :.::::.: ::.. . : . :.:::.: :. ..:. :
CCDS43 WQRDGEEQTQDTELVETRPAGDGTFQKWAAVVVPPGEEQRYTCHVQHEGLPQPLILRWEQ
240 250 260 270 280 290
250 260 270 280 290
pF1KE6 ESE-TIPLVMKAVSGSIVLVIVLAG--VGVLVWRRRPREQNGAIYLPTPDR
. :::.: :.: .:: :..: :....::.. ..: . :
CCDS43 SPQPTIPIV-GIVAGLVVLGAVVTGAVVAAVMWRKKSSDRNRGSYSQAAAYSVVSGNLMI
300 310 320 330 340 350
CCDS43 TWWSSLFLLGVLFQGYLGCLRSHSVLGRRKVGDMWILFFLWLWTSFNTAFLALQSLRFGF
360 370 380 390 400 410
>>CCDS4668.1 G gene_id:3135|Hs108|chr6 (338 aa)
initn: 520 init1: 347 opt: 436 Z-score: 498.0 bits: 100.3 E(32554): 2e-21
Smith-Waterman score: 556; 32.4% identity (61.2% similar) in 312 aa overlap (24-281:26-335)
10 20 30 40 50
pF1KE6 MGELMAFLLPLIIVLMVKHSDSRTHSLRYFRLGVSDPIHGVPEFISVGYVDSHPITTY
.::.::: .:: : .: :.::..::::. .. .
CCDS46 MVVMAPRTLFLLLSGALTLTETWAGSHSMRYFSAAVSRPGRGEPRFIAMGYVDDTQFVRF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE6 DSVTR--QKEPRAPWMAENLAPDHWERYTQLLRGWQQMFKVELKRLQRHYNHSDNVAHTI
:: . . ::::::. :. .:..::. :. .. : ...:. :. .::.:. .::.
CCDS46 DSDSACPRMEPRAPWV-EQEGPEYWEEETRNTKAHAQTDRMNLQTLRGYYNQSEASSHTL
70 80 90 100 110
120 130
pF1KE6 KQ-------------------AWEANQHELLYQ--KNW----------------------
. :...... : . ..:
CCDS46 QWMIGCDLGSDGRLLRGYEQYAYDGKDYLALNEDLRSWTAADTAAQISKRKCEAANVAEQ
120 130 140 150 160 170
140 150 160 170 180
pF1KE6 ----LEEECIAWLKRFLEYGKDTLQRTEPPLVRVNRKETFPGVTALFCKAHGFYPPEIYM
:: :. ::.:.:: ::. :::..:: ..:... .: ..: : : :::: :: .
CCDS46 RRAYLEGTCVEWLHRYLENGKEMLQRADPPKTHVTHHPVFDYEATLRCWALGFYPAEIIL
180 190 200 210 220 230
190 200 210 220 230 240
pF1KE6 TWMKNGEEIVQEIDYGDILPSGDGTYQAWASIELDPQSSNLYSCHVEHCGVH--MVLQVP
::...::. .:... . :.::::.: ::.. . . :.:::.: :. ..:.
CCDS46 TWQRDGEDQTQDVELVETRPAGDGTFQKWAAVVVPSGEEQRYTCHVQHEGLPEPLMLRWK
240 250 260 270 280 290
250 260 270 280 290
pF1KE6 QES-ETIPLVMKAVSGSIVLVIVLAGVGV--LVWRRRPREQNGAIYLPTPDR
: : ::: .: :.: .::. :..:..: ..::..
CCDS46 QSSLPTIP-IMGIVAGLVVLAAVVTGAAVAAVLWRKKSSD
300 310 320 330
>>CCDS34394.1 B gene_id:3106|Hs108|chr6 (362 aa)
initn: 508 init1: 330 opt: 426 Z-score: 486.4 bits: 98.3 E(32554): 9.1e-21
Smith-Waterman score: 565; 32.4% identity (58.6% similar) in 321 aa overlap (24-290:26-344)
10 20 30 40 50
pF1KE6 MGELMAFLLPLIIVLMVKHSDSRTHSLRYFRLGVSDPIHGVPEFISVGYVDSHPITTY
.::.::: .:: : .: :.::::::::. .. .
CCDS34 MLVMAPRTVLLLLSAALALTETWAGSHSMRYFYTSVSRPGRGEPRFISVGYVDDTQFVRF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE6 DS--VTRQKEPRAPWMAENLAPDHWERYTQLLRGWQQMFKVELKRLQRHYNHSDNVAHTI
:: .. ..::::::. :. .:..:.: ::. .. : . :. :. .::.:. .::.
CCDS34 DSDAASPREEPRAPWI-EQEGPEYWDRNTQIYKAQAQTDRESLRNLRGYYNQSEAGSHTL
70 80 90 100 110
120 130
pF1KE6 K----------------------------------QAWEA-NQHELLYQKNW--------
. ..: : . . :..:
CCDS34 QSMYGCDVGPDGRLLRGHDQYAYDGKDYIALNEDLRSWTAADTAAQITQRKWEAAREAEQ
120 130 140 150 160 170
140 150 160 170 180
pF1KE6 ----LEEECIAWLKRFLEYGKDTLQRTEPPLVRVNRKETFPGVTALFCKAHGFYPPEIYM
:: ::. ::.:.:: ::: :.:..:: ..:... ..: : : :::: :: .
CCDS34 RRAYLEGECVEWLRRYLENGKDKLERADPPKTHVTHHPISDHEATLRCWALGFYPAEITL
180 190 200 210 220 230
190 200 210 220 230 240
pF1KE6 TWMKNGEEIVQEIDYGDILPSGDGTYQAWASIELDPQSSNLYSCHVEHCGVHMVLQV---
::...::. .:. . . :.:: :.: ::.. . . :.:::.: :. : .
CCDS34 TWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWE
240 250 260 270 280 290
250 260 270 280 290
pF1KE6 PQESETIPLVMKAVSGSIVLVIVLAG--VGVLVWRRRPREQNGAIYLPTPDR
:. . :.:.: :.: ::..:. : :.... ::. .:. :
CCDS34 PSSQSTVPIV-GIVAGLAVLAVVVIGAVVAAVMCRRKSSGGKGGSYSQAACSDSAQGSDV
300 310 320 330 340 350
CCDS34 SLTA
360
>>CCDS34393.1 C gene_id:3107|Hs108|chr6 (366 aa)
initn: 579 init1: 341 opt: 416 Z-score: 475.0 bits: 96.2 E(32554): 3.9e-20
Smith-Waterman score: 562; 34.6% identity (59.8% similar) in 306 aa overlap (24-277:26-328)
10 20 30 40 50
pF1KE6 MGELMAFLLPLIIVLMVKHSDSRTHSLRYFRLGVSDPIHGVPEFISVGYVDSHPITTY
.::.::: .:: : .: :.::::::::. .. .
CCDS34 MRVMAPRALLLLLSGGLALTETWACSHSMRYFDTAVSRPGRGEPRFISVGYVDDTQFVRF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE6 DS--VTRQKEPRAPWMAENLAPDHWERYTQLLRGWQQMFKVELKRLQRHYNHSDNVAHTI
:: .. . ::::::. :. .:..:.: :: . : .: :. :. .::.:.. .::.
CCDS34 DSDAASPRGEPRAPWV-EQEGPEYWDRETQKYKRQAQADRVSLRNLRGYYNQSEDGSHTL
70 80 90 100 110
120 130
pF1KE6 KQ----------------------------------AWEA-------NQHELLYQKN---
.. .: : .:..: .
CCDS34 QRMSGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQITQRKLEAARAAEQ
120 130 140 150 160 170
140 150 160 170 180
pF1KE6 ---WLEEECIAWLKRFLEYGKDTLQRTEPPLVRVNRKETFPGVTALFCKAHGFYPPEIYM
.:: :. ::.:.:: ::.::::.::: ..:... ..: : : :::: :: .
CCDS34 LRAYLEGTCVEWLRRYLENGKETLQRAEPPKTHVTHHPLSDHEATLRCWALGFYPAEITL
180 190 200 210 220 230
190 200 210 220 230 240
pF1KE6 TWMKNGEEIVQEIDYGDILPSGDGTYQAWASIELDPQSSNLYSCHVEHCGVHMVLQV---
::...::. .:. . . :.::::.: ::.. . . . :.::..: :.. : .
CCDS34 TWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHMQHEGLQEPLTLSWE
240 250 260 270 280 290
250 260 270 280 290
pF1KE6 PQESETIPLVMKAVSGSIVLVIVLAGVGVLVWRRRPREQNGAIYLPTPDR
:. . ::: .: :.: ::: ::: .:..:
CCDS34 PSSQPTIP-IMGIVAGLAVLV-VLAVLGAVVTAMMCRRKSSGGKGGSCSQAACSNSAQGS
300 310 320 330 340 350
CCDS34 DESLITCKA
360
296 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 15:17:36 2016 done: Tue Nov 8 15:17:37 2016
Total Scan time: 1.870 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]