FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5346, 285 aa 1>>>pF1KE5346 285 - 285 aa - 285 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.0345+/-0.000876; mu= 8.9331+/- 0.053 mean_var=130.5124+/-25.540, 0's: 0 Z-trim(111.2): 6 B-trim: 0 in 0/52 Lambda= 0.112266 statistics sampled from 12227 (12229) to 12227 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.748), E-opt: 0.2 (0.376), width: 16 Scan time: 2.400 The best scores are: opt bits E(32554) CCDS7944.1 AGBL2 gene_id:79841|Hs108|chr11 ( 902) 1908 320.0 3.8e-87 CCDS47718.1 AGBL3 gene_id:340351|Hs108|chr7 ( 920) 420 79.0 1.4e-14 >>CCDS7944.1 AGBL2 gene_id:79841|Hs108|chr11 (902 aa) initn: 1908 init1: 1908 opt: 1908 Z-score: 1678.1 bits: 320.0 E(32554): 3.8e-87 Smith-Waterman score: 1908; 99.6% identity (100.0% similar) in 285 aa overlap (1-285:618-902) 10 20 30 pF1KE5 MWRMGILNSYTMESTFGGSTLGNKRDTHFT :::::::::::::::::::::::::::::: CCDS79 MLCKNAPDKFSFHSCNFKVQKCKEGTGRVVMWRMGILNSYTMESTFGGSTLGNKRDTHFT 590 600 610 620 630 640 40 50 60 70 80 90 pF1KE5 IEDLKSLGYHVCDTLLDFCDPDQIKFTQCLAELKELLRQEIHKKFHELGQDVDLEGSWSD :::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::: CCDS79 IEDLKSLGYHVCDTLLDFCDPDQMKFTQCLAELKELLRQEIHKKFHELGQDVDLEGSWSD 650 660 670 680 690 700 100 110 120 130 140 150 pF1KE5 ISLSDIESSTSGSDSSLSDGLPVHLANIADELTQKKKMFKKKKKKSLQTRKQRNEQYQKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS79 ISLSDIESSTSGSDSSLSDGLPVHLANIADELTQKKKMFKKKKKKSLQTRKQRNEQYQKK 710 720 730 740 750 760 160 170 180 190 200 210 pF1KE5 NLMQKLKLTEDTSEKAGFASTLQKQPTFFKNSENSSFLPMKNENPRLNETNLNRRDKDTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS79 NLMQKLKLTEDTSEKAGFASTLQKQPTFFKNSENSSFLPMKNENPRLNETNLNRRDKDTP 770 780 790 800 810 820 220 230 240 250 260 270 pF1KE5 LDPSMATLILPKNKGRMQNKKPGFTVSCSPKRTINSSQEPAPGMKPNWPRSRYPATKRGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS79 LDPSMATLILPKNKGRMQNKKPGFTVSCSPKRTINSSQEPAPGMKPNWPRSRYPATKRGC 830 840 850 860 870 880 280 pF1KE5 AAMAAYPSLHIYTYP ::::::::::::::: CCDS79 AAMAAYPSLHIYTYP 890 900 >>CCDS47718.1 AGBL3 gene_id:340351|Hs108|chr7 (920 aa) initn: 446 init1: 348 opt: 420 Z-score: 375.4 bits: 79.0 E(32554): 1.4e-14 Smith-Waterman score: 440; 47.5% identity (71.2% similar) in 160 aa overlap (1-155:522-670) 10 20 30 pF1KE5 MWRMGILNSYTMESTFGGSTLGNKRDTHFT ::.::: ::.:::.:: :::::::: :::. CCDS47 MLSKNCPDKFSFSACKFNVQKSKEGTGRVVMWKMGIRNSFTMEATFCGSTLGNKRGTHFS 500 510 520 530 540 550 40 50 60 70 80 90 pF1KE5 IEDLKSLGYHVCDTLLDFCDPDQIKFTQCLAELKELLRQEIHKKFHELGQDVDLEGSWSD .::.:.::: ::.:::.::::. :. .:: ::.:. : : .... .: : : CCDS47 TKDLESMGYHFCDSLLDYCDPDRTKYYRCLKELEEMER---HITLEKVFEDSDT--PVID 560 570 580 590 600 100 110 120 130 140 pF1KE5 ISLSDIESSTSGSDSSLS-DGLPVHLANIADELTQKKKMFKKKKKKSLQTRKQRN----E :.: :.:::. ::::: : :.: : .::..:: .: ::... ...: : CCDS47 ITL-DVESSSRGSDSSESIDSLTYLL-----KLTSQKKHLKTKKERNSTIASHQNARGQE 610 620 630 640 650 660 150 160 170 180 190 200 pF1KE5 QYQKKNLMQKLKLTEDTSEKAGFASTLQKQPTFFKNSENSSFLPMKNENPRLNETNLNRR :.. .:.:. CCDS47 VYDRGHLLQRHTQSNSDVKDTRPNEPDDYMVDYFRRQLPNQGLDLHHNLKSKIKECISFQ 670 680 690 700 710 720 285 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 23:59:13 2016 done: Mon Nov 7 23:59:13 2016 Total Scan time: 2.400 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]