FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5287, 226 aa 1>>>pF1KE5287 226 - 226 aa - 226 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.2462+/-0.000367; mu= -3.5020+/- 0.023 mean_var=238.3845+/-49.722, 0's: 0 Z-trim(121.5): 36 B-trim: 1900 in 2/55 Lambda= 0.083068 statistics sampled from 38185 (38238) to 38185 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.788), E-opt: 0.2 (0.448), width: 16 Scan time: 7.310 The best scores are: opt bits E(85289) NP_001882 (OMIM: 115460) beta-casein isoform 1 pre ( 226) 1531 195.5 6e-50 XP_016863249 (OMIM: 115460) PREDICTED: beta-casein ( 226) 1531 195.5 6e-50 NP_001289699 (OMIM: 115460) beta-casein isoform 2 ( 225) 1512 193.2 2.9e-49 >>NP_001882 (OMIM: 115460) beta-casein isoform 1 precurs (226 aa) initn: 1531 init1: 1531 opt: 1531 Z-score: 1017.7 bits: 195.5 E(85289): 6e-50 Smith-Waterman score: 1531; 100.0% identity (100.0% similar) in 226 aa overlap (1-226:1-226) 10 20 30 40 50 60 pF1KE5 MKVLILACLVALALARETIESLSSSEESITEYKQKVEKVKHEDQQQGEDEHQDKIYPSFQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MKVLILACLVALALARETIESLSSSEESITEYKQKVEKVKHEDQQQGEDEHQDKIYPSFQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 PQPLIYPFVEPIPYGFLPQNILPLAQPAVVLPVPQPEIMEVPKAKDTVYTKGRVMPVLKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PQPLIYPFVEPIPYGFLPQNILPLAQPAVVLPVPQPEIMEVPKAKDTVYTKGRVMPVLKS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 PTIPFFDPQIPKLTDLENLHLPLPLLQPLMQQVPQPIPQTLALPPQPLWSVPQPKVLPIP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PTIPFFDPQIPKLTDLENLHLPLPLLQPLMQQVPQPIPQTLALPPQPLWSVPQPKVLPIP 130 140 150 160 170 180 190 200 210 220 pF1KE5 QQVVPYPQRAVPVQALLLNQELLLNPTHQIYPVTQPLAPVHNPISV :::::::::::::::::::::::::::::::::::::::::::::: NP_001 QQVVPYPQRAVPVQALLLNQELLLNPTHQIYPVTQPLAPVHNPISV 190 200 210 220 >>XP_016863249 (OMIM: 115460) PREDICTED: beta-casein iso (226 aa) initn: 1531 init1: 1531 opt: 1531 Z-score: 1017.7 bits: 195.5 E(85289): 6e-50 Smith-Waterman score: 1531; 100.0% identity (100.0% similar) in 226 aa overlap (1-226:1-226) 10 20 30 40 50 60 pF1KE5 MKVLILACLVALALARETIESLSSSEESITEYKQKVEKVKHEDQQQGEDEHQDKIYPSFQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MKVLILACLVALALARETIESLSSSEESITEYKQKVEKVKHEDQQQGEDEHQDKIYPSFQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 PQPLIYPFVEPIPYGFLPQNILPLAQPAVVLPVPQPEIMEVPKAKDTVYTKGRVMPVLKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PQPLIYPFVEPIPYGFLPQNILPLAQPAVVLPVPQPEIMEVPKAKDTVYTKGRVMPVLKS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 PTIPFFDPQIPKLTDLENLHLPLPLLQPLMQQVPQPIPQTLALPPQPLWSVPQPKVLPIP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PTIPFFDPQIPKLTDLENLHLPLPLLQPLMQQVPQPIPQTLALPPQPLWSVPQPKVLPIP 130 140 150 160 170 180 190 200 210 220 pF1KE5 QQVVPYPQRAVPVQALLLNQELLLNPTHQIYPVTQPLAPVHNPISV :::::::::::::::::::::::::::::::::::::::::::::: XP_016 QQVVPYPQRAVPVQALLLNQELLLNPTHQIYPVTQPLAPVHNPISV 190 200 210 220 >>NP_001289699 (OMIM: 115460) beta-casein isoform 2 prec (225 aa) initn: 1344 init1: 1344 opt: 1512 Z-score: 1005.4 bits: 193.2 E(85289): 2.9e-49 Smith-Waterman score: 1512; 99.6% identity (99.6% similar) in 226 aa overlap (1-226:1-225) 10 20 30 40 50 60 pF1KE5 MKVLILACLVALALARETIESLSSSEESITEYKQKVEKVKHEDQQQGEDEHQDKIYPSFQ ::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::: NP_001 MKVLILACLVALALARETIESLSSSEESITEYK-KVEKVKHEDQQQGEDEHQDKIYPSFQ 10 20 30 40 50 70 80 90 100 110 120 pF1KE5 PQPLIYPFVEPIPYGFLPQNILPLAQPAVVLPVPQPEIMEVPKAKDTVYTKGRVMPVLKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PQPLIYPFVEPIPYGFLPQNILPLAQPAVVLPVPQPEIMEVPKAKDTVYTKGRVMPVLKS 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE5 PTIPFFDPQIPKLTDLENLHLPLPLLQPLMQQVPQPIPQTLALPPQPLWSVPQPKVLPIP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PTIPFFDPQIPKLTDLENLHLPLPLLQPLMQQVPQPIPQTLALPPQPLWSVPQPKVLPIP 120 130 140 150 160 170 190 200 210 220 pF1KE5 QQVVPYPQRAVPVQALLLNQELLLNPTHQIYPVTQPLAPVHNPISV :::::::::::::::::::::::::::::::::::::::::::::: NP_001 QQVVPYPQRAVPVQALLLNQELLLNPTHQIYPVTQPLAPVHNPISV 180 190 200 210 220 226 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 07:27:41 2016 done: Tue Nov 8 07:27:42 2016 Total Scan time: 7.310 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]