FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5287, 226 aa
  1>>>pF1KE5287 226 - 226 aa - 226 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.1340+/-0.000872; mu= -2.7394+/- 0.052
 mean_var=209.6784+/-42.268, 0's: 0 Z-trim(113.8): 30  B-trim: 0 in 0/55
 Lambda= 0.088572
 statistics sampled from 14350 (14374) to 14350 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.788), E-opt: 0.2 (0.442), width:  16
 Scan time:  2.450

The best scores are:                                      opt bits E(32554)
CCDS3532.1 CSN2 gene_id:1447|Hs108|chr4            ( 226) 1531 207.3 6.5e-54


>>CCDS3532.1 CSN2 gene_id:1447|Hs108|chr4                 (226 aa)
 initn: 1531 init1: 1531 opt: 1531  Z-score: 1081.4  bits: 207.3 E(32554): 6.5e-54
Smith-Waterman score: 1531; 100.0% identity (100.0% similar) in 226 aa overlap (1-226:1-226)

               10        20        30        40        50        60
pF1KE5 MKVLILACLVALALARETIESLSSSEESITEYKQKVEKVKHEDQQQGEDEHQDKIYPSFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MKVLILACLVALALARETIESLSSSEESITEYKQKVEKVKHEDQQQGEDEHQDKIYPSFQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 PQPLIYPFVEPIPYGFLPQNILPLAQPAVVLPVPQPEIMEVPKAKDTVYTKGRVMPVLKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 PQPLIYPFVEPIPYGFLPQNILPLAQPAVVLPVPQPEIMEVPKAKDTVYTKGRVMPVLKS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 PTIPFFDPQIPKLTDLENLHLPLPLLQPLMQQVPQPIPQTLALPPQPLWSVPQPKVLPIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 PTIPFFDPQIPKLTDLENLHLPLPLLQPLMQQVPQPIPQTLALPPQPLWSVPQPKVLPIP
              130       140       150       160       170       180

              190       200       210       220      
pF1KE5 QQVVPYPQRAVPVQALLLNQELLLNPTHQIYPVTQPLAPVHNPISV
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 QQVVPYPQRAVPVQALLLNQELLLNPTHQIYPVTQPLAPVHNPISV
              190       200       210       220      




226 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 07:27:41 2016 done: Tue Nov  8 07:27:41 2016
 Total Scan time:  2.450 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]