Result of FASTA (omim) for
pFN21AE6562
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6562, 167 aa
1>>>pF1KE6562 167 - 167 aa - 167 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.6944+/-0.000306; mu= 6.3545+/- 0.019
mean_var=106.3488+/-21.268, 0's: 0 Z-trim(118.8): 41 B-trim: 1696 in 1/55
Lambda= 0.124368
statistics sampled from 32040 (32098) to 32040 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.376), width: 16
Scan time: 5.180
The best scores are: opt bits E(85289)
NP_001242951 (OMIM: 603283,604772,615441) triadin ( 167) 1059 199.7 1.8e-51
NP_001242950 (OMIM: 603283,604772,615441) triadin ( 286) 1021 193.0 3.1e-49
NP_001242949 (OMIM: 603283,604772,615441) triadin ( 297) 1021 193.1 3.2e-49
NP_001238916 (OMIM: 603283,604772,615441) triadin ( 461) 1021 193.2 4.7e-49
NP_006064 (OMIM: 603283,604772,615441) triadin iso ( 729) 1021 193.3 6.9e-49
>>NP_001242951 (OMIM: 603283,604772,615441) triadin isof (167 aa)
initn: 1059 init1: 1059 opt: 1059 Z-score: 1045.1 bits: 199.7 E(85289): 1.8e-51
Smith-Waterman score: 1059; 99.4% identity (100.0% similar) in 167 aa overlap (1-167:1-167)
10 20 30 40 50 60
pF1KE6 MTEITAEGNASTTTTVIDSKNGSVPKSPGKVLKRTVTEDIVTTFSSPAAWLLVIALIITW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTEITAEGNASTTTTVIDSKNGSVPKSPGKVLKRTVTEDIVTTFSSPAAWLLVIALIITW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 SAVAIVMFDLVDYKNFSASSIAKIGSDPLKLVRDAMEETTDWIYGFFSLLSDIISSEDEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SAVAIVMFDLVDYKNFSASSIAKIGSDPLKLVRDAMEETTDWIYGFFSLLSDIISSEDEE
70 80 90 100 110 120
130 140 150 160
pF1KE6 DDDGDEDSDKGEIDEPPLRKKEIHKDKTEKQEKPERKIQTKEVGHSS
:::::::.:::::::::::::::::::::::::::::::::::::::
NP_001 DDDGDEDTDKGEIDEPPLRKKEIHKDKTEKQEKPERKIQTKEVGHSS
130 140 150 160
>>NP_001242950 (OMIM: 603283,604772,615441) triadin isof (286 aa)
initn: 1020 init1: 1020 opt: 1021 Z-score: 1004.8 bits: 193.0 E(85289): 3.1e-49
Smith-Waterman score: 1021; 98.2% identity (98.8% similar) in 165 aa overlap (1-165:1-164)
10 20 30 40 50 60
pF1KE6 MTEITAEGNASTTTTVIDSKNGSVPKSPGKVLKRTVTEDIVTTFSSPAAWLLVIALIITW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTEITAEGNASTTTTVIDSKNGSVPKSPGKVLKRTVTEDIVTTFSSPAAWLLVIALIITW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 SAVAIVMFDLVDYKNFSASSIAKIGSDPLKLVRDAMEETTDWIYGFFSLLSDIISSEDEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SAVAIVMFDLVDYKNFSASSIAKIGSDPLKLVRDAMEETTDWIYGFFSLLSDIISSEDEE
70 80 90 100 110 120
130 140 150 160
pF1KE6 DDDGDEDSDKGEIDEPPLRKKEIHKDKTEKQEKPERKIQTKEVGHSS
:::::::.::::::::::::::::::::::::::::::::: : :
NP_001 DDDGDEDTDKGEIDEPPLRKKEIHKDKTEKQEKPERKIQTK-VTHKEKEKGKEKVREKEK
130 140 150 160 170
NP_001 PEKKATHKEKIEKKEKPETKTLAKEQKKAKTAEKSEEKTKKEVKGGKQEKVKQTAAKVKE
180 190 200 210 220 230
>>NP_001242949 (OMIM: 603283,604772,615441) triadin isof (297 aa)
initn: 1020 init1: 1020 opt: 1021 Z-score: 1004.6 bits: 193.1 E(85289): 3.2e-49
Smith-Waterman score: 1021; 98.2% identity (98.8% similar) in 165 aa overlap (1-165:1-164)
10 20 30 40 50 60
pF1KE6 MTEITAEGNASTTTTVIDSKNGSVPKSPGKVLKRTVTEDIVTTFSSPAAWLLVIALIITW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTEITAEGNASTTTTVIDSKNGSVPKSPGKVLKRTVTEDIVTTFSSPAAWLLVIALIITW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 SAVAIVMFDLVDYKNFSASSIAKIGSDPLKLVRDAMEETTDWIYGFFSLLSDIISSEDEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SAVAIVMFDLVDYKNFSASSIAKIGSDPLKLVRDAMEETTDWIYGFFSLLSDIISSEDEE
70 80 90 100 110 120
130 140 150 160
pF1KE6 DDDGDEDSDKGEIDEPPLRKKEIHKDKTEKQEKPERKIQTKEVGHSS
:::::::.::::::::::::::::::::::::::::::::: : :
NP_001 DDDGDEDTDKGEIDEPPLRKKEIHKDKTEKQEKPERKIQTK-VTHKEKEKGKEKVREKEK
130 140 150 160 170
NP_001 PEKKATHKEKIEKKEKPETKTLAKEQKKAKTAEKSEEKTKKEVKGGKQEKVKQTAAKVKE
180 190 200 210 220 230
>>NP_001238916 (OMIM: 603283,604772,615441) triadin isof (461 aa)
initn: 1020 init1: 1020 opt: 1021 Z-score: 1001.7 bits: 193.2 E(85289): 4.7e-49
Smith-Waterman score: 1021; 98.2% identity (98.8% similar) in 165 aa overlap (1-165:1-164)
10 20 30 40 50 60
pF1KE6 MTEITAEGNASTTTTVIDSKNGSVPKSPGKVLKRTVTEDIVTTFSSPAAWLLVIALIITW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTEITAEGNASTTTTVIDSKNGSVPKSPGKVLKRTVTEDIVTTFSSPAAWLLVIALIITW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 SAVAIVMFDLVDYKNFSASSIAKIGSDPLKLVRDAMEETTDWIYGFFSLLSDIISSEDEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SAVAIVMFDLVDYKNFSASSIAKIGSDPLKLVRDAMEETTDWIYGFFSLLSDIISSEDEE
70 80 90 100 110 120
130 140 150 160
pF1KE6 DDDGDEDSDKGEIDEPPLRKKEIHKDKTEKQEKPERKIQTKEVGHSS
:::::::.::::::::::::::::::::::::::::::::: : :
NP_001 DDDGDEDTDKGEIDEPPLRKKEIHKDKTEKQEKPERKIQTK-VTHKEKEKGKEKVREKEK
130 140 150 160 170
NP_001 PEKKATHKEKIEKKEKPETKTLAKEQKKAKTAEKSEEKTKKEVKGGKQEKVKQTAAKVKE
180 190 200 210 220 230
>>NP_006064 (OMIM: 603283,604772,615441) triadin isoform (729 aa)
initn: 1020 init1: 1020 opt: 1021 Z-score: 998.7 bits: 193.3 E(85289): 6.9e-49
Smith-Waterman score: 1021; 98.2% identity (98.8% similar) in 165 aa overlap (1-165:1-164)
10 20 30 40 50 60
pF1KE6 MTEITAEGNASTTTTVIDSKNGSVPKSPGKVLKRTVTEDIVTTFSSPAAWLLVIALIITW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MTEITAEGNASTTTTVIDSKNGSVPKSPGKVLKRTVTEDIVTTFSSPAAWLLVIALIITW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 SAVAIVMFDLVDYKNFSASSIAKIGSDPLKLVRDAMEETTDWIYGFFSLLSDIISSEDEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SAVAIVMFDLVDYKNFSASSIAKIGSDPLKLVRDAMEETTDWIYGFFSLLSDIISSEDEE
70 80 90 100 110 120
130 140 150 160
pF1KE6 DDDGDEDSDKGEIDEPPLRKKEIHKDKTEKQEKPERKIQTKEVGHSS
:::::::.::::::::::::::::::::::::::::::::: : :
NP_006 DDDGDEDTDKGEIDEPPLRKKEIHKDKTEKQEKPERKIQTK-VTHKEKEKGKEKVREKEK
130 140 150 160 170
NP_006 PEKKATHKEKIEKKEKPETKTLAKEQKKAKTAEKSEEKTKKEVKGGKQEKVKQTAAKVKE
180 190 200 210 220 230
167 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 14:25:59 2016 done: Tue Nov 8 14:26:00 2016
Total Scan time: 5.180 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]