Result of FASTA (ccds) for
pFN21AE6562
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6562, 167 aa
1>>>pF1KE6562 167 - 167 aa - 167 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3892+/-0.000761; mu= 8.0266+/- 0.046
mean_var=98.9635+/-19.635, 0's: 0 Z-trim(111.3): 23 B-trim: 520 in 1/52
Lambda= 0.128925
statistics sampled from 12257 (12272) to 12257 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.741), E-opt: 0.2 (0.377), width: 16
Scan time: 1.400
The best scores are: opt bits E(32554)
CCDS59035.1 TRDN gene_id:10345|Hs108|chr6 ( 167) 1059 206.4 6.7e-54
CCDS75511.1 TRDN gene_id:10345|Hs108|chr6 ( 286) 1021 199.5 1.4e-51
CCDS59034.1 TRDN gene_id:10345|Hs108|chr6 ( 297) 1021 199.5 1.4e-51
CCDS55053.1 TRDN gene_id:10345|Hs108|chr6 ( 729) 1021 199.7 3e-51
>>CCDS59035.1 TRDN gene_id:10345|Hs108|chr6 (167 aa)
initn: 1059 init1: 1059 opt: 1059 Z-score: 1081.2 bits: 206.4 E(32554): 6.7e-54
Smith-Waterman score: 1059; 99.4% identity (100.0% similar) in 167 aa overlap (1-167:1-167)
10 20 30 40 50 60
pF1KE6 MTEITAEGNASTTTTVIDSKNGSVPKSPGKVLKRTVTEDIVTTFSSPAAWLLVIALIITW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MTEITAEGNASTTTTVIDSKNGSVPKSPGKVLKRTVTEDIVTTFSSPAAWLLVIALIITW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 SAVAIVMFDLVDYKNFSASSIAKIGSDPLKLVRDAMEETTDWIYGFFSLLSDIISSEDEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SAVAIVMFDLVDYKNFSASSIAKIGSDPLKLVRDAMEETTDWIYGFFSLLSDIISSEDEE
70 80 90 100 110 120
130 140 150 160
pF1KE6 DDDGDEDSDKGEIDEPPLRKKEIHKDKTEKQEKPERKIQTKEVGHSS
:::::::.:::::::::::::::::::::::::::::::::::::::
CCDS59 DDDGDEDTDKGEIDEPPLRKKEIHKDKTEKQEKPERKIQTKEVGHSS
130 140 150 160
>>CCDS75511.1 TRDN gene_id:10345|Hs108|chr6 (286 aa)
initn: 1020 init1: 1020 opt: 1021 Z-score: 1039.5 bits: 199.5 E(32554): 1.4e-51
Smith-Waterman score: 1021; 98.2% identity (98.8% similar) in 165 aa overlap (1-165:1-164)
10 20 30 40 50 60
pF1KE6 MTEITAEGNASTTTTVIDSKNGSVPKSPGKVLKRTVTEDIVTTFSSPAAWLLVIALIITW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MTEITAEGNASTTTTVIDSKNGSVPKSPGKVLKRTVTEDIVTTFSSPAAWLLVIALIITW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 SAVAIVMFDLVDYKNFSASSIAKIGSDPLKLVRDAMEETTDWIYGFFSLLSDIISSEDEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SAVAIVMFDLVDYKNFSASSIAKIGSDPLKLVRDAMEETTDWIYGFFSLLSDIISSEDEE
70 80 90 100 110 120
130 140 150 160
pF1KE6 DDDGDEDSDKGEIDEPPLRKKEIHKDKTEKQEKPERKIQTKEVGHSS
:::::::.::::::::::::::::::::::::::::::::: : :
CCDS75 DDDGDEDTDKGEIDEPPLRKKEIHKDKTEKQEKPERKIQTK-VTHKEKEKGKEKVREKEK
130 140 150 160 170
CCDS75 PEKKATHKEKIEKKEKPETKTLAKEQKKAKTAEKSEEKTKKEVKGGKQEKVKQTAAKVKE
180 190 200 210 220 230
>>CCDS59034.1 TRDN gene_id:10345|Hs108|chr6 (297 aa)
initn: 1020 init1: 1020 opt: 1021 Z-score: 1039.3 bits: 199.5 E(32554): 1.4e-51
Smith-Waterman score: 1021; 98.2% identity (98.8% similar) in 165 aa overlap (1-165:1-164)
10 20 30 40 50 60
pF1KE6 MTEITAEGNASTTTTVIDSKNGSVPKSPGKVLKRTVTEDIVTTFSSPAAWLLVIALIITW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MTEITAEGNASTTTTVIDSKNGSVPKSPGKVLKRTVTEDIVTTFSSPAAWLLVIALIITW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 SAVAIVMFDLVDYKNFSASSIAKIGSDPLKLVRDAMEETTDWIYGFFSLLSDIISSEDEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 SAVAIVMFDLVDYKNFSASSIAKIGSDPLKLVRDAMEETTDWIYGFFSLLSDIISSEDEE
70 80 90 100 110 120
130 140 150 160
pF1KE6 DDDGDEDSDKGEIDEPPLRKKEIHKDKTEKQEKPERKIQTKEVGHSS
:::::::.::::::::::::::::::::::::::::::::: : :
CCDS59 DDDGDEDTDKGEIDEPPLRKKEIHKDKTEKQEKPERKIQTK-VTHKEKEKGKEKVREKEK
130 140 150 160 170
CCDS59 PEKKATHKEKIEKKEKPETKTLAKEQKKAKTAEKSEEKTKKEVKGGKQEKVKQTAAKVKE
180 190 200 210 220 230
>>CCDS55053.1 TRDN gene_id:10345|Hs108|chr6 (729 aa)
initn: 1020 init1: 1020 opt: 1021 Z-score: 1033.5 bits: 199.7 E(32554): 3e-51
Smith-Waterman score: 1021; 98.2% identity (98.8% similar) in 165 aa overlap (1-165:1-164)
10 20 30 40 50 60
pF1KE6 MTEITAEGNASTTTTVIDSKNGSVPKSPGKVLKRTVTEDIVTTFSSPAAWLLVIALIITW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MTEITAEGNASTTTTVIDSKNGSVPKSPGKVLKRTVTEDIVTTFSSPAAWLLVIALIITW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 SAVAIVMFDLVDYKNFSASSIAKIGSDPLKLVRDAMEETTDWIYGFFSLLSDIISSEDEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SAVAIVMFDLVDYKNFSASSIAKIGSDPLKLVRDAMEETTDWIYGFFSLLSDIISSEDEE
70 80 90 100 110 120
130 140 150 160
pF1KE6 DDDGDEDSDKGEIDEPPLRKKEIHKDKTEKQEKPERKIQTKEVGHSS
:::::::.::::::::::::::::::::::::::::::::: : :
CCDS55 DDDGDEDTDKGEIDEPPLRKKEIHKDKTEKQEKPERKIQTK-VTHKEKEKGKEKVREKEK
130 140 150 160 170
CCDS55 PEKKATHKEKIEKKEKPETKTLAKEQKKAKTAEKSEEKTKKEVKGGKQEKVKQTAAKVKE
180 190 200 210 220 230
167 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 14:25:58 2016 done: Tue Nov 8 14:25:59 2016
Total Scan time: 1.400 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]