Result of FASTA (omim) for
pFN21AE5267
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5267, 188 aa
1>>>pF1KE5267 188 - 188 aa - 188 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3329+/-0.000355; mu= 13.4689+/- 0.022
mean_var=73.6950+/-14.995, 0's: 0 Z-trim(113.5): 40 B-trim: 0 in 0/53
Lambda= 0.149402
statistics sampled from 22789 (22827) to 22789 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.655), E-opt: 0.2 (0.268), width: 16
Scan time: 4.700
The best scores are: opt bits E(85289)
XP_005252492 (OMIM: 616513) PREDICTED: la-related ( 650) 686 157.1 5.2e-38
NP_055970 (OMIM: 616513) la-related protein 4B [Ho ( 738) 686 157.2 5.7e-38
XP_016871479 (OMIM: 616513) PREDICTED: la-related ( 773) 686 157.2 5.9e-38
XP_011517737 (OMIM: 616513) PREDICTED: la-related ( 773) 686 157.2 5.9e-38
XP_005252489 (OMIM: 616513) PREDICTED: la-related ( 773) 686 157.2 5.9e-38
XP_016871478 (OMIM: 616513) PREDICTED: la-related (1172) 686 157.3 8.2e-38
XP_016871477 (OMIM: 616513) PREDICTED: la-related (1238) 686 157.3 8.6e-38
XP_016871476 (OMIM: 616513) PREDICTED: la-related (1273) 686 157.3 8.8e-38
XP_016871483 (OMIM: 616513) PREDICTED: la-related ( 562) 563 130.6 4.4e-30
XP_016871482 (OMIM: 616513) PREDICTED: la-related ( 597) 563 130.6 4.6e-30
XP_016871481 (OMIM: 616513) PREDICTED: la-related ( 616) 530 123.5 6.5e-28
XP_016864773 (OMIM: 612059) PREDICTED: la-related ( 824) 221 57.0 9.2e-08
XP_016864772 (OMIM: 612059) PREDICTED: la-related ( 858) 221 57.0 9.5e-08
XP_005268464 (OMIM: 612059) PREDICTED: la-related ( 891) 221 57.0 9.8e-08
XP_006714839 (OMIM: 612059) PREDICTED: la-related ( 891) 221 57.0 9.8e-08
XP_005268465 (OMIM: 612059) PREDICTED: la-related ( 891) 221 57.0 9.8e-08
XP_011535920 (OMIM: 612059) PREDICTED: la-related ( 891) 221 57.0 9.8e-08
XP_006714838 (OMIM: 612059) PREDICTED: la-related ( 955) 221 57.0 1e-07
XP_011535919 (OMIM: 612059) PREDICTED: la-related ( 961) 221 57.0 1e-07
XP_011535918 (OMIM: 612059) PREDICTED: la-related ( 988) 221 57.0 1.1e-07
NP_056130 (OMIM: 612059) la-related protein 1 [Hom (1019) 221 57.1 1.1e-07
XP_011535917 (OMIM: 612059) PREDICTED: la-related (1029) 221 57.1 1.1e-07
XP_005268463 (OMIM: 612059) PREDICTED: la-related (1063) 221 57.1 1.1e-07
XP_011535916 (OMIM: 612059) PREDICTED: la-related (1070) 221 57.1 1.1e-07
XP_005268461 (OMIM: 612059) PREDICTED: la-related (1096) 221 57.1 1.2e-07
NP_001253968 (OMIM: 612026,615071) la-related prot ( 589) 167 45.3 0.00023
NP_056269 (OMIM: 612026,615071) la-related protein ( 582) 163 44.4 0.00041
NP_057732 (OMIM: 612026,615071) la-related protein ( 582) 163 44.4 0.00041
>>XP_005252492 (OMIM: 616513) PREDICTED: la-related prot (650 aa)
initn: 669 init1: 669 opt: 686 Z-score: 803.5 bits: 157.1 E(85289): 5.2e-38
Smith-Waterman score: 686; 61.2% identity (87.3% similar) in 165 aa overlap (20-182:2-166)
10 20 30 40 50
pF1KE5 MYSSSCETTRNTTGIEESTDGMILGPEDLSY--QIYDVSGESNSAVSTEDLKECLKKQLE
... ::: . . . ...:. .. : :: .: ::: ::
XP_005 MNALALGPSEYDSLPENSETGGNESQPDSQEDPREVLKKTLE
10 20 30 40
60 70 80 90 100 110
pF1KE5 FCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEK
::.:::::..:.::::::::::..:: ::::...::::.:: :::.::::: :.::::::
XP_005 FCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDVDLIVEVLRSLPLVQVDEK
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE5 GEKVRPSHKRCIVILREIPETTPIEEVKGLFKSENCPKVISCEFAHNSNWYITFQSDTDA
::::::...::::::::: :.::.:::..:::..: :: :.::::.:.::.:::....::
XP_005 GEKVRPNQNRCIVILREISESTPVEEVEALFKGDNLPKFINCEFAYNDNWFITFETEADA
110 120 130 140 150 160
180
pF1KE5 QQAFILKRRS
:::.
XP_005 QQAYKYLREEVKTFQGKPIKARIKAKAIAINTFLPKNGFRPLDVSLYAQQRYATSFYFPP
170 180 190 200 210 220
>>NP_055970 (OMIM: 616513) la-related protein 4B [Homo s (738 aa)
initn: 669 init1: 669 opt: 686 Z-score: 802.7 bits: 157.2 E(85289): 5.7e-38
Smith-Waterman score: 686; 61.2% identity (87.3% similar) in 165 aa overlap (20-182:125-289)
10 20 30 40
pF1KE5 MYSSSCETTRNTTGIEESTDGMILGPEDLSY--QIYDVSGESNSAVSTE
... ::: . . . ...:. .. : :
NP_055 PQGSDANGDGDQGHENAALPDPQESDPADMNALALGPSEYDSLPENSETGGNESQPDSQE
100 110 120 130 140 150
50 60 70 80 90 100
pF1KE5 DLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVL
: .: ::: ::::.:::::..:.::::::::::..:: ::::...::::.:: :::.:::
NP_055 DPREVLKKTLEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDVDLIVEVL
160 170 180 190 200 210
110 120 130 140 150 160
pF1KE5 RSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKGLFKSENCPKVISCEFAHNSN
:: :.::::::::::::...::::::::: :.::.:::..:::..: :: :.::::.:.:
NP_055 RSLPLVQVDEKGEKVRPNQNRCIVILREISESTPVEEVEALFKGDNLPKFINCEFAYNDN
220 230 240 250 260 270
170 180
pF1KE5 WYITFQSDTDAQQAFILKRRS
:.:::....:::::.
NP_055 WFITFETEADAQQAYKYLREEVKTFQGKPIKARIKAKAIAINTFLPKNGFRPLDVSLYAQ
280 290 300 310 320 330
>>XP_016871479 (OMIM: 616513) PREDICTED: la-related prot (773 aa)
initn: 669 init1: 669 opt: 686 Z-score: 802.4 bits: 157.2 E(85289): 5.9e-38
Smith-Waterman score: 686; 61.2% identity (87.3% similar) in 165 aa overlap (20-182:125-289)
10 20 30 40
pF1KE5 MYSSSCETTRNTTGIEESTDGMILGPEDLSY--QIYDVSGESNSAVSTE
... ::: . . . ...:. .. : :
XP_016 PQGSDANGDGDQGHENAALPDPQESDPADMNALALGPSEYDSLPENSETGGNESQPDSQE
100 110 120 130 140 150
50 60 70 80 90 100
pF1KE5 DLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVL
: .: ::: ::::.:::::..:.::::::::::..:: ::::...::::.:: :::.:::
XP_016 DPREVLKKTLEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDVDLIVEVL
160 170 180 190 200 210
110 120 130 140 150 160
pF1KE5 RSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKGLFKSENCPKVISCEFAHNSN
:: :.::::::::::::...::::::::: :.::.:::..:::..: :: :.::::.:.:
XP_016 RSLPLVQVDEKGEKVRPNQNRCIVILREISESTPVEEVEALFKGDNLPKFINCEFAYNDN
220 230 240 250 260 270
170 180
pF1KE5 WYITFQSDTDAQQAFILKRRS
:.:::....:::::.
XP_016 WFITFETEADAQQAYKYLREEVKTFQGKPIKARIKAKAIAINTFLPKNGFRPLDVSLYAQ
280 290 300 310 320 330
>>XP_011517737 (OMIM: 616513) PREDICTED: la-related prot (773 aa)
initn: 669 init1: 669 opt: 686 Z-score: 802.4 bits: 157.2 E(85289): 5.9e-38
Smith-Waterman score: 686; 61.2% identity (87.3% similar) in 165 aa overlap (20-182:125-289)
10 20 30 40
pF1KE5 MYSSSCETTRNTTGIEESTDGMILGPEDLSY--QIYDVSGESNSAVSTE
... ::: . . . ...:. .. : :
XP_011 PQGSDANGDGDQGHENAALPDPQESDPADMNALALGPSEYDSLPENSETGGNESQPDSQE
100 110 120 130 140 150
50 60 70 80 90 100
pF1KE5 DLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVL
: .: ::: ::::.:::::..:.::::::::::..:: ::::...::::.:: :::.:::
XP_011 DPREVLKKTLEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDVDLIVEVL
160 170 180 190 200 210
110 120 130 140 150 160
pF1KE5 RSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKGLFKSENCPKVISCEFAHNSN
:: :.::::::::::::...::::::::: :.::.:::..:::..: :: :.::::.:.:
XP_011 RSLPLVQVDEKGEKVRPNQNRCIVILREISESTPVEEVEALFKGDNLPKFINCEFAYNDN
220 230 240 250 260 270
170 180
pF1KE5 WYITFQSDTDAQQAFILKRRS
:.:::....:::::.
XP_011 WFITFETEADAQQAYKYLREEVKTFQGKPIKARIKAKAIAINTFLPKNGFRPLDVSLYAQ
280 290 300 310 320 330
>>XP_005252489 (OMIM: 616513) PREDICTED: la-related prot (773 aa)
initn: 669 init1: 669 opt: 686 Z-score: 802.4 bits: 157.2 E(85289): 5.9e-38
Smith-Waterman score: 686; 61.2% identity (87.3% similar) in 165 aa overlap (20-182:125-289)
10 20 30 40
pF1KE5 MYSSSCETTRNTTGIEESTDGMILGPEDLSY--QIYDVSGESNSAVSTE
... ::: . . . ...:. .. : :
XP_005 PQGSDANGDGDQGHENAALPDPQESDPADMNALALGPSEYDSLPENSETGGNESQPDSQE
100 110 120 130 140 150
50 60 70 80 90 100
pF1KE5 DLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVL
: .: ::: ::::.:::::..:.::::::::::..:: ::::...::::.:: :::.:::
XP_005 DPREVLKKTLEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDVDLIVEVL
160 170 180 190 200 210
110 120 130 140 150 160
pF1KE5 RSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKGLFKSENCPKVISCEFAHNSN
:: :.::::::::::::...::::::::: :.::.:::..:::..: :: :.::::.:.:
XP_005 RSLPLVQVDEKGEKVRPNQNRCIVILREISESTPVEEVEALFKGDNLPKFINCEFAYNDN
220 230 240 250 260 270
170 180
pF1KE5 WYITFQSDTDAQQAFILKRRS
:.:::....:::::.
XP_005 WFITFETEADAQQAYKYLREEVKTFQGKPIKARIKAKAIAINTFLPKNGFRPLDVSLYAQ
280 290 300 310 320 330
>>XP_016871478 (OMIM: 616513) PREDICTED: la-related prot (1172 aa)
initn: 697 init1: 669 opt: 686 Z-score: 799.8 bits: 157.3 E(85289): 8.2e-38
Smith-Waterman score: 686; 61.2% identity (87.3% similar) in 165 aa overlap (20-182:625-789)
10 20 30 40
pF1KE5 MYSSSCETTRNTTGIEESTDGMILGPEDLSY--QIYDVSGESNSAVSTE
... ::: . . . ...:. .. : :
XP_016 PQGSDANGDGDQGHENAALPDPQESDPADMNALALGPSEYDSLPENSETGGNESQPDSQE
600 610 620 630 640 650
50 60 70 80 90 100
pF1KE5 DLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVL
: .: ::: ::::.:::::..:.::::::::::..:: ::::...::::.:: :::.:::
XP_016 DPREVLKKTLEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDVDLIVEVL
660 670 680 690 700 710
110 120 130 140 150 160
pF1KE5 RSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKGLFKSENCPKVISCEFAHNSN
:: :.::::::::::::...::::::::: :.::.:::..:::..: :: :.::::.:.:
XP_016 RSLPLVQVDEKGEKVRPNQNRCIVILREISESTPVEEVEALFKGDNLPKFINCEFAYNDN
720 730 740 750 760 770
170 180
pF1KE5 WYITFQSDTDAQQAFILKRRS
:.:::....:::::.
XP_016 WFITFETEADAQQAYKYLREEVKTFQGKPIKARIKAKAIAINTFLPKNGFRPLDVSLYAQ
780 790 800 810 820 830
>>XP_016871477 (OMIM: 616513) PREDICTED: la-related prot (1238 aa)
initn: 697 init1: 669 opt: 686 Z-score: 799.5 bits: 157.3 E(85289): 8.6e-38
Smith-Waterman score: 686; 61.2% identity (87.3% similar) in 165 aa overlap (20-182:625-789)
10 20 30 40
pF1KE5 MYSSSCETTRNTTGIEESTDGMILGPEDLSY--QIYDVSGESNSAVSTE
... ::: . . . ...:. .. : :
XP_016 PQGSDANGDGDQGHENAALPDPQESDPADMNALALGPSEYDSLPENSETGGNESQPDSQE
600 610 620 630 640 650
50 60 70 80 90 100
pF1KE5 DLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVL
: .: ::: ::::.:::::..:.::::::::::..:: ::::...::::.:: :::.:::
XP_016 DPREVLKKTLEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDVDLIVEVL
660 670 680 690 700 710
110 120 130 140 150 160
pF1KE5 RSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKGLFKSENCPKVISCEFAHNSN
:: :.::::::::::::...::::::::: :.::.:::..:::..: :: :.::::.:.:
XP_016 RSLPLVQVDEKGEKVRPNQNRCIVILREISESTPVEEVEALFKGDNLPKFINCEFAYNDN
720 730 740 750 760 770
170 180
pF1KE5 WYITFQSDTDAQQAFILKRRS
:.:::....:::::.
XP_016 WFITFETEADAQQAYKYLREEVKTFQGKPIKARIKAKAIAINTFLPKNGFRPLDVSLYAQ
780 790 800 810 820 830
>>XP_016871476 (OMIM: 616513) PREDICTED: la-related prot (1273 aa)
initn: 697 init1: 669 opt: 686 Z-score: 799.3 bits: 157.3 E(85289): 8.8e-38
Smith-Waterman score: 686; 61.2% identity (87.3% similar) in 165 aa overlap (20-182:625-789)
10 20 30 40
pF1KE5 MYSSSCETTRNTTGIEESTDGMILGPEDLSY--QIYDVSGESNSAVSTE
... ::: . . . ...:. .. : :
XP_016 PQGSDANGDGDQGHENAALPDPQESDPADMNALALGPSEYDSLPENSETGGNESQPDSQE
600 610 620 630 640 650
50 60 70 80 90 100
pF1KE5 DLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVL
: .: ::: ::::.:::::..:.::::::::::..:: ::::...::::.:: :::.:::
XP_016 DPREVLKKTLEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDVDLIVEVL
660 670 680 690 700 710
110 120 130 140 150 160
pF1KE5 RSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKGLFKSENCPKVISCEFAHNSN
:: :.::::::::::::...::::::::: :.::.:::..:::..: :: :.::::.:.:
XP_016 RSLPLVQVDEKGEKVRPNQNRCIVILREISESTPVEEVEALFKGDNLPKFINCEFAYNDN
720 730 740 750 760 770
170 180
pF1KE5 WYITFQSDTDAQQAFILKRRS
:.:::....:::::.
XP_016 WFITFETEADAQQAYKYLREEVKTFQGKPIKARIKAKAIAINTFLPKNGFRPLDVSLYAQ
780 790 800 810 820 830
>>XP_016871483 (OMIM: 616513) PREDICTED: la-related prot (562 aa)
initn: 560 init1: 560 opt: 563 Z-score: 661.1 bits: 130.6 E(85289): 4.4e-30
Smith-Waterman score: 563; 70.8% identity (94.7% similar) in 113 aa overlap (70-182:1-113)
40 50 60 70 80 90
pF1KE5 SNSAVSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTD
.::::::::::..:: ::::...::::.::
XP_016 MYLISQMDSDQYVPITTVANLDHIKKLSTD
10 20 30
100 110 120 130 140 150
pF1KE5 PDLILEVLRSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKGLFKSENCPKVIS
:::.::::: :.::::::::::::...::::::::: :.::.:::..:::..: :: :.
XP_016 VDLIVEVLRSLPLVQVDEKGEKVRPNQNRCIVILREISESTPVEEVEALFKGDNLPKFIN
40 50 60 70 80 90
160 170 180
pF1KE5 CEFAHNSNWYITFQSDTDAQQAFILKRRS
::::.:.::.:::....:::::.
XP_016 CEFAYNDNWFITFETEADAQQAYKYLREEVKTFQGKPIKARIKAKAIAINTFLPKNGFRP
100 110 120 130 140 150
>>XP_016871482 (OMIM: 616513) PREDICTED: la-related prot (597 aa)
initn: 560 init1: 560 opt: 563 Z-score: 660.7 bits: 130.6 E(85289): 4.6e-30
Smith-Waterman score: 563; 70.8% identity (94.7% similar) in 113 aa overlap (70-182:1-113)
40 50 60 70 80 90
pF1KE5 SNSAVSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTD
.::::::::::..:: ::::...::::.::
XP_016 MYLISQMDSDQYVPITTVANLDHIKKLSTD
10 20 30
100 110 120 130 140 150
pF1KE5 PDLILEVLRSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKGLFKSENCPKVIS
:::.::::: :.::::::::::::...::::::::: :.::.:::..:::..: :: :.
XP_016 VDLIVEVLRSLPLVQVDEKGEKVRPNQNRCIVILREISESTPVEEVEALFKGDNLPKFIN
40 50 60 70 80 90
160 170 180
pF1KE5 CEFAHNSNWYITFQSDTDAQQAFILKRRS
::::.:.::.:::....:::::.
XP_016 CEFAYNDNWFITFETEADAQQAYKYLREEVKTFQGKPIKARIKAKAIAINTFLPKNGFRP
100 110 120 130 140 150
188 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 23:17:03 2016 done: Mon Nov 7 23:17:04 2016
Total Scan time: 4.700 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]