Result of FASTA (ccds) for
pFN21AE5267
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5267, 188 aa
1>>>pF1KE5267 188 - 188 aa - 188 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3672+/-0.000858; mu= 12.9766+/- 0.052
mean_var=64.5948+/-13.031, 0's: 0 Z-trim(106.5): 26 B-trim: 262 in 1/48
Lambda= 0.159579
statistics sampled from 8985 (9005) to 8985 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.664), E-opt: 0.2 (0.277), width: 16
Scan time: 1.930
The best scores are: opt bits E(32554)
CCDS53789.1 LARP4 gene_id:113251|Hs108|chr12 ( 445) 1202 285.2 3.7e-77
CCDS44880.1 LARP4 gene_id:113251|Hs108|chr12 ( 653) 1202 285.3 5.1e-77
CCDS53790.1 LARP4 gene_id:113251|Hs108|chr12 ( 653) 1202 285.3 5.1e-77
CCDS44879.2 LARP4 gene_id:113251|Hs108|chr12 ( 723) 1202 285.3 5.6e-77
CCDS41782.1 LARP4 gene_id:113251|Hs108|chr12 ( 724) 1202 285.3 5.6e-77
CCDS81690.1 LARP4 gene_id:113251|Hs108|chr12 ( 730) 1202 285.3 5.6e-77
CCDS31131.1 LARP4B gene_id:23185|Hs108|chr10 ( 738) 686 166.6 3.3e-41
>>CCDS53789.1 LARP4 gene_id:113251|Hs108|chr12 (445 aa)
initn: 1202 init1: 1202 opt: 1202 Z-score: 1498.7 bits: 285.2 E(32554): 3.7e-77
Smith-Waterman score: 1202; 100.0% identity (100.0% similar) in 182 aa overlap (1-182:71-252)
10 20 30
pF1KE5 MYSSSCETTRNTTGIEESTDGMILGPEDLS
::::::::::::::::::::::::::::::
CCDS53 SSWHEIAATSGAHPEGNAELSEDICKEYEVMYSSSCETTRNTTGIEESTDGMILGPEDLS
50 60 70 80 90 100
40 50 60 70 80 90
pF1KE5 YQIYDVSGESNSAVSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 YQIYDVSGESNSAVSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANM
110 120 130 140 150 160
100 110 120 130 140 150
pF1KE5 EEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKGLFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 EEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKGLFK
170 180 190 200 210 220
160 170 180
pF1KE5 SENCPKVISCEFAHNSNWYITFQSDTDAQQAFILKRRS
::::::::::::::::::::::::::::::::
CCDS53 SENCPKVISCEFAHNSNWYITFQSDTDAQQAFKYLREEVKTFQGKPIMARIKAINTFFAK
230 240 250 260 270 280
CCDS53 NGYRLMDSSIYSHPIQTQAQYASPVFMQPVYNPHQQYSVYSIVPQSWSPNPTPYFETPLA
290 300 310 320 330 340
>>CCDS44880.1 LARP4 gene_id:113251|Hs108|chr12 (653 aa)
initn: 1202 init1: 1202 opt: 1202 Z-score: 1496.2 bits: 285.3 E(32554): 5.1e-77
Smith-Waterman score: 1202; 100.0% identity (100.0% similar) in 182 aa overlap (1-182:71-252)
10 20 30
pF1KE5 MYSSSCETTRNTTGIEESTDGMILGPEDLS
::::::::::::::::::::::::::::::
CCDS44 SSWHEIAATSGAHPEGNAELSEDICKEYEVMYSSSCETTRNTTGIEESTDGMILGPEDLS
50 60 70 80 90 100
40 50 60 70 80 90
pF1KE5 YQIYDVSGESNSAVSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 YQIYDVSGESNSAVSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANM
110 120 130 140 150 160
100 110 120 130 140 150
pF1KE5 EEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKGLFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKGLFK
170 180 190 200 210 220
160 170 180
pF1KE5 SENCPKVISCEFAHNSNWYITFQSDTDAQQAFILKRRS
::::::::::::::::::::::::::::::::
CCDS44 SENCPKVISCEFAHNSNWYITFQSDTDAQQAFKYLREEVKTFQGKPIMAPFPNGSFVNGF
230 240 250 260 270 280
CCDS44 NSPGSYKTNAAAMNMGRPFQKNRVKPQFRSSGGSEHSTEGSVSLGDGQLNRYSSRNFPAE
290 300 310 320 330 340
>>CCDS53790.1 LARP4 gene_id:113251|Hs108|chr12 (653 aa)
initn: 1202 init1: 1202 opt: 1202 Z-score: 1496.2 bits: 285.3 E(32554): 5.1e-77
Smith-Waterman score: 1202; 100.0% identity (100.0% similar) in 182 aa overlap (1-182:71-252)
10 20 30
pF1KE5 MYSSSCETTRNTTGIEESTDGMILGPEDLS
::::::::::::::::::::::::::::::
CCDS53 SSWHEIAATSGAHPEGNAELSEDICKEYEVMYSSSCETTRNTTGIEESTDGMILGPEDLS
50 60 70 80 90 100
40 50 60 70 80 90
pF1KE5 YQIYDVSGESNSAVSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 YQIYDVSGESNSAVSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANM
110 120 130 140 150 160
100 110 120 130 140 150
pF1KE5 EEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKGLFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 EEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKGLFK
170 180 190 200 210 220
160 170 180
pF1KE5 SENCPKVISCEFAHNSNWYITFQSDTDAQQAFILKRRS
::::::::::::::::::::::::::::::::
CCDS53 SENCPKVISCEFAHNSNWYITFQSDTDAQQAFKYLREEVKTFQGKPIMARIKAINTFFAK
230 240 250 260 270 280
CCDS53 NGYRLMDSSIYSHPIQTQAQYASPVFMQPVYNPHQQYSVYSIVPQSWSPNPTPYFETPLA
290 300 310 320 330 340
>>CCDS44879.2 LARP4 gene_id:113251|Hs108|chr12 (723 aa)
initn: 1202 init1: 1202 opt: 1202 Z-score: 1495.5 bits: 285.3 E(32554): 5.6e-77
Smith-Waterman score: 1202; 100.0% identity (100.0% similar) in 182 aa overlap (1-182:70-251)
10 20 30
pF1KE5 MYSSSCETTRNTTGIEESTDGMILGPEDLS
::::::::::::::::::::::::::::::
CCDS44 SSWHEIAATSGAHPEGNAELSEDICKEYEVMYSSSCETTRNTTGIEESTDGMILGPEDLS
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE5 YQIYDVSGESNSAVSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 YQIYDVSGESNSAVSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANM
100 110 120 130 140 150
100 110 120 130 140 150
pF1KE5 EEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKGLFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKGLFK
160 170 180 190 200 210
160 170 180
pF1KE5 SENCPKVISCEFAHNSNWYITFQSDTDAQQAFILKRRS
::::::::::::::::::::::::::::::::
CCDS44 SENCPKVISCEFAHNSNWYITFQSDTDAQQAFKYLREEVKTFQGKPIMARIKAINTFFAK
220 230 240 250 260 270
CCDS44 NGYRLMDSSIYSHPIQTQAQYASPVFMQPVYNPHQQYSVYSIVPQSWSPNPTPYFETPLA
280 290 300 310 320 330
>>CCDS41782.1 LARP4 gene_id:113251|Hs108|chr12 (724 aa)
initn: 1202 init1: 1202 opt: 1202 Z-score: 1495.5 bits: 285.3 E(32554): 5.6e-77
Smith-Waterman score: 1202; 100.0% identity (100.0% similar) in 182 aa overlap (1-182:71-252)
10 20 30
pF1KE5 MYSSSCETTRNTTGIEESTDGMILGPEDLS
::::::::::::::::::::::::::::::
CCDS41 SSWHEIAATSGAHPEGNAELSEDICKEYEVMYSSSCETTRNTTGIEESTDGMILGPEDLS
50 60 70 80 90 100
40 50 60 70 80 90
pF1KE5 YQIYDVSGESNSAVSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 YQIYDVSGESNSAVSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANM
110 120 130 140 150 160
100 110 120 130 140 150
pF1KE5 EEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKGLFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 EEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKGLFK
170 180 190 200 210 220
160 170 180
pF1KE5 SENCPKVISCEFAHNSNWYITFQSDTDAQQAFILKRRS
::::::::::::::::::::::::::::::::
CCDS41 SENCPKVISCEFAHNSNWYITFQSDTDAQQAFKYLREEVKTFQGKPIMARIKAINTFFAK
230 240 250 260 270 280
CCDS41 NGYRLMDSSIYSHPIQTQAQYASPVFMQPVYNPHQQYSVYSIVPQSWSPNPTPYFETPLA
290 300 310 320 330 340
>>CCDS81690.1 LARP4 gene_id:113251|Hs108|chr12 (730 aa)
initn: 1202 init1: 1202 opt: 1202 Z-score: 1495.4 bits: 285.3 E(32554): 5.6e-77
Smith-Waterman score: 1202; 100.0% identity (100.0% similar) in 182 aa overlap (1-182:77-258)
10 20 30
pF1KE5 MYSSSCETTRNTTGIEESTDGMILGPEDLS
::::::::::::::::::::::::::::::
CCDS81 AATSGAHPEVSVFNTGNAELSEDICKEYEVMYSSSCETTRNTTGIEESTDGMILGPEDLS
50 60 70 80 90 100
40 50 60 70 80 90
pF1KE5 YQIYDVSGESNSAVSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 YQIYDVSGESNSAVSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANM
110 120 130 140 150 160
100 110 120 130 140 150
pF1KE5 EEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKGLFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 EEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKGLFK
170 180 190 200 210 220
160 170 180
pF1KE5 SENCPKVISCEFAHNSNWYITFQSDTDAQQAFILKRRS
::::::::::::::::::::::::::::::::
CCDS81 SENCPKVISCEFAHNSNWYITFQSDTDAQQAFKYLREEVKTFQGKPIMARIKAINTFFAK
230 240 250 260 270 280
CCDS81 NGYRLMDSSIYSHPIQTQAQYASPVFMQPVYNPHQQYSVYSIVPQSWSPNPTPYFETPLA
290 300 310 320 330 340
>>CCDS31131.1 LARP4B gene_id:23185|Hs108|chr10 (738 aa)
initn: 669 init1: 669 opt: 686 Z-score: 853.3 bits: 166.6 E(32554): 3.3e-41
Smith-Waterman score: 686; 61.2% identity (87.3% similar) in 165 aa overlap (20-182:125-289)
10 20 30 40
pF1KE5 MYSSSCETTRNTTGIEESTDGMILGPEDLSY--QIYDVSGESNSAVSTE
... ::: . . . ...:. .. : :
CCDS31 PQGSDANGDGDQGHENAALPDPQESDPADMNALALGPSEYDSLPENSETGGNESQPDSQE
100 110 120 130 140 150
50 60 70 80 90 100
pF1KE5 DLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVL
: .: ::: ::::.:::::..:.::::::::::..:: ::::...::::.:: :::.:::
CCDS31 DPREVLKKTLEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDVDLIVEVL
160 170 180 190 200 210
110 120 130 140 150 160
pF1KE5 RSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKGLFKSENCPKVISCEFAHNSN
:: :.::::::::::::...::::::::: :.::.:::..:::..: :: :.::::.:.:
CCDS31 RSLPLVQVDEKGEKVRPNQNRCIVILREISESTPVEEVEALFKGDNLPKFINCEFAYNDN
220 230 240 250 260 270
170 180
pF1KE5 WYITFQSDTDAQQAFILKRRS
:.:::....:::::.
CCDS31 WFITFETEADAQQAYKYLREEVKTFQGKPIKARIKAKAIAINTFLPKNGFRPLDVSLYAQ
280 290 300 310 320 330
188 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 23:17:02 2016 done: Mon Nov 7 23:17:03 2016
Total Scan time: 1.930 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]