FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6559, 160 aa 1>>>pF1KE6559 160 - 160 aa - 160 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.7581+/-0.000317; mu= 14.8961+/- 0.020 mean_var=59.1130+/-12.058, 0's: 0 Z-trim(116.3): 47 B-trim: 1134 in 1/50 Lambda= 0.166814 statistics sampled from 27356 (27403) to 27356 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.711), E-opt: 0.2 (0.321), width: 16 Scan time: 4.900 The best scores are: opt bits E(85289) NP_001162195 (OMIM: 616360) transmembrane protein ( 436) 881 220.0 3.4e-57 NP_075069 (OMIM: 616360) transmembrane protein 135 ( 458) 871 217.6 1.9e-56 XP_016873629 (OMIM: 616360) PREDICTED: transmembra ( 374) 273 73.7 3.4e-13 >>NP_001162195 (OMIM: 616360) transmembrane protein 135 (436 aa) initn: 870 init1: 870 opt: 881 Z-score: 1147.7 bits: 220.0 E(85289): 3.4e-57 Smith-Waterman score: 881; 95.0% identity (96.5% similar) in 141 aa overlap (1-141:1-141) 10 20 30 40 50 60 pF1KE6 MAALSKSIPHNCYEIGHTWHPSCRVSFLQITGGALEESLKIYAPLYLIAAILRKRKLDYY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAALSKSIPHNCYEIGHTWHPSCRVSFLQITGGALEESLKIYAPLYLIAAILRKRKLDYY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 LHKLLPEILQSASFLTANGALYMAFFCILRKILGKFYSWTPGFGAALPASYVAILIERKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LHKLLPEILQSASFLTANGALYMAFFCILRKILGKFYSWTPGFGAALPASYVAILIERKS 70 80 90 100 110 120 130 140 150 160 pF1KE6 RRGLLTIYMANLMESHCLPQAGVISAPCSLCLPGSRDSPA ::::::::::::. :. : NP_001 RRGLLTIYMANLVLLFCITAAMYMFFFRCKDGLKGFTFSALRFIVGKEEIPTHSFSPEAA 130 140 150 160 170 180 >>NP_075069 (OMIM: 616360) transmembrane protein 135 iso (458 aa) initn: 869 init1: 869 opt: 871 Z-score: 1134.4 bits: 217.6 E(85289): 1.9e-56 Smith-Waterman score: 871; 94.4% identity (96.5% similar) in 143 aa overlap (1-143:1-142) 10 20 30 40 50 60 pF1KE6 MAALSKSIPHNCYEIGHTWHPSCRVSFLQITGGALEESLKIYAPLYLIAAILRKRKLDYY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_075 MAALSKSIPHNCYEIGHTWHPSCRVSFLQITGGALEESLKIYAPLYLIAAILRKRKLDYY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 LHKLLPEILQSASFLTANGALYMAFFCILRKILGKFYSWTPGFGAALPASYVAILIERKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_075 LHKLLPEILQSASFLTANGALYMAFFCILRKILGKFYSWTPGFGAALPASYVAILIERKS 70 80 90 100 110 120 130 140 150 160 pF1KE6 RRGLLTIYMANLMESHCLPQAGVISAPCSLCLPGSRDSPA :::::::::::: .. : . :: NP_075 RRGLLTIYMANLA-TETLFRMGVARGTITTLRNGEVLLFCITAAMYMFFFRCKDGLKGFT 130 140 150 160 170 >>XP_016873629 (OMIM: 616360) PREDICTED: transmembrane p (374 aa) initn: 271 init1: 271 opt: 273 Z-score: 357.9 bits: 73.7 E(85289): 3.4e-13 Smith-Waterman score: 273; 84.9% identity (90.6% similar) in 53 aa overlap (91-143:7-58) 70 80 90 100 110 120 pF1KE6 LHKLLPEILQSASFLTANGALYMAFFCILRKILGKFYSWTPGFGAALPASYVAILIERKS :::::::::::::::::::::::::::::: XP_016 MLLCTWKILGKFYSWTPGFGAALPASYVAILIERKS 10 20 30 130 140 150 160 pF1KE6 RRGLLTIYMANLMESHCLPQAGVISAPCSLCLPGSRDSPA :::::::::::: .. : . :: XP_016 RRGLLTIYMANLA-TETLFRMGVARGTITTLRNGEVLLFCITAAMYMFFFRCKDGLKGFT 40 50 60 70 80 90 160 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:24:36 2016 done: Tue Nov 8 14:24:37 2016 Total Scan time: 4.900 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]