FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6559, 160 aa
  1>>>pF1KE6559 160 - 160 aa - 160 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8365+/-0.00066; mu= 14.4391+/- 0.040
 mean_var=56.7581+/-11.434, 0's: 0 Z-trim(109.7): 30  B-trim: 0 in 0/51
 Lambda= 0.170239
 statistics sampled from 11039 (11058) to 11039 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.732), E-opt: 0.2 (0.34), width:  16
 Scan time:  1.190

The best scores are:                                      opt bits E(32554)
CCDS53692.1 TMEM135 gene_id:65084|Hs108|chr11      ( 436)  881 224.1 7.9e-59
CCDS8280.1 TMEM135 gene_id:65084|Hs108|chr11       ( 458)  871 221.6 4.5e-58


>>CCDS53692.1 TMEM135 gene_id:65084|Hs108|chr11           (436 aa)
 initn: 870 init1: 870 opt: 881  Z-score: 1169.6  bits: 224.1 E(32554): 7.9e-59
Smith-Waterman score: 881; 95.0% identity (96.5% similar) in 141 aa overlap (1-141:1-141)

               10        20        30        40        50        60
pF1KE6 MAALSKSIPHNCYEIGHTWHPSCRVSFLQITGGALEESLKIYAPLYLIAAILRKRKLDYY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MAALSKSIPHNCYEIGHTWHPSCRVSFLQITGGALEESLKIYAPLYLIAAILRKRKLDYY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 LHKLLPEILQSASFLTANGALYMAFFCILRKILGKFYSWTPGFGAALPASYVAILIERKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LHKLLPEILQSASFLTANGALYMAFFCILRKILGKFYSWTPGFGAALPASYVAILIERKS
               70        80        90       100       110       120

              130       140       150       160                    
pF1KE6 RRGLLTIYMANLMESHCLPQAGVISAPCSLCLPGSRDSPA                    
       ::::::::::::.   :.  :                                       
CCDS53 RRGLLTIYMANLVLLFCITAAMYMFFFRCKDGLKGFTFSALRFIVGKEEIPTHSFSPEAA
              130       140       150       160       170       180

>>CCDS8280.1 TMEM135 gene_id:65084|Hs108|chr11            (458 aa)
 initn: 869 init1: 869 opt: 871  Z-score: 1156.0  bits: 221.6 E(32554): 4.5e-58
Smith-Waterman score: 871; 94.4% identity (96.5% similar) in 143 aa overlap (1-143:1-142)

               10        20        30        40        50        60
pF1KE6 MAALSKSIPHNCYEIGHTWHPSCRVSFLQITGGALEESLKIYAPLYLIAAILRKRKLDYY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MAALSKSIPHNCYEIGHTWHPSCRVSFLQITGGALEESLKIYAPLYLIAAILRKRKLDYY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 LHKLLPEILQSASFLTANGALYMAFFCILRKILGKFYSWTPGFGAALPASYVAILIERKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LHKLLPEILQSASFLTANGALYMAFFCILRKILGKFYSWTPGFGAALPASYVAILIERKS
               70        80        90       100       110       120

              130       140       150       160                    
pF1KE6 RRGLLTIYMANLMESHCLPQAGVISAPCSLCLPGSRDSPA                    
       ::::::::::::  .. : . ::                                     
CCDS82 RRGLLTIYMANLA-TETLFRMGVARGTITTLRNGEVLLFCITAAMYMFFFRCKDGLKGFT
              130        140       150       160       170         




160 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:24:36 2016 done: Tue Nov  8 14:24:36 2016
 Total Scan time:  1.190 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]