FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5288, 233 aa 1>>>pF1KE5288 233 - 233 aa - 233 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7434+/-0.000668; mu= 14.0443+/- 0.040 mean_var=95.4690+/-19.131, 0's: 0 Z-trim(113.0): 36 B-trim: 0 in 0/52 Lambda= 0.131263 statistics sampled from 13612 (13648) to 13612 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.773), E-opt: 0.2 (0.419), width: 16 Scan time: 1.830 The best scores are: opt bits E(32554) CCDS3249.1 HTR3D gene_id:200909|Hs108|chr3 ( 279) 1585 309.4 1.5e-84 CCDS46966.1 HTR3D gene_id:200909|Hs108|chr3 ( 404) 1585 309.6 2e-84 CCDS54685.1 HTR3D gene_id:200909|Hs108|chr3 ( 454) 1491 291.8 4.9e-79 CCDS58869.1 HTR3E gene_id:285242|Hs108|chr3 ( 441) 974 193.9 1.4e-49 CCDS58868.1 HTR3E gene_id:285242|Hs108|chr3 ( 456) 974 193.9 1.5e-49 CCDS58870.1 HTR3E gene_id:285242|Hs108|chr3 ( 456) 974 193.9 1.5e-49 CCDS3251.1 HTR3E gene_id:285242|Hs108|chr3 ( 471) 974 193.9 1.5e-49 CCDS58871.1 HTR3E gene_id:285242|Hs108|chr3 ( 482) 974 193.9 1.5e-49 CCDS3250.1 HTR3C gene_id:170572|Hs108|chr3 ( 447) 530 109.8 2.9e-24 >>CCDS3249.1 HTR3D gene_id:200909|Hs108|chr3 (279 aa) initn: 1585 init1: 1585 opt: 1585 Z-score: 1631.5 bits: 309.4 E(32554): 1.5e-84 Smith-Waterman score: 1585; 100.0% identity (100.0% similar) in 232 aa overlap (2-233:48-279) 10 20 30 pF1KE5 MVAIRRRCRPSPYVVNFLVPSGILIAIDALS :::::::::::::::::::::::::::::: CCDS32 GWSASANWTPSISPSMDRGERSPSALSPTQVAIRRRCRPSPYVVNFLVPSGILIAIDALS 20 30 40 50 60 70 40 50 60 70 80 90 pF1KE5 FYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPATSTSSHASLVRPHPSRDQKRGVYFAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 FYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPATSTSSHASLVRPHPSRDQKRGVYFAL 80 90 100 110 120 130 100 110 120 130 140 150 pF1KE5 CLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHSLLLHCTGQGRCCPTAPQKGNKGPGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 CLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHSLLLHCTGQGRCCPTAPQKGNKGPGL 140 150 160 170 180 190 160 170 180 190 200 210 pF1KE5 TPTHLPGVKEPEVSAGQMPGPGEAELTGGSEWTRAQREHEAQKQHSVELWVQFSHAMDAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 TPTHLPGVKEPEVSAGQMPGPGEAELTGGSEWTRAQREHEAQKQHSVELWVQFSHAMDAL 200 210 220 230 240 250 220 230 pF1KE5 LFRLYLLFMASSIITVICLWNT :::::::::::::::::::::: CCDS32 LFRLYLLFMASSIITVICLWNT 260 270 >>CCDS46966.1 HTR3D gene_id:200909|Hs108|chr3 (404 aa) initn: 1585 init1: 1585 opt: 1585 Z-score: 1629.3 bits: 309.6 E(32554): 2e-84 Smith-Waterman score: 1585; 100.0% identity (100.0% similar) in 232 aa overlap (2-233:173-404) 10 20 30 pF1KE5 MVAIRRRCRPSPYVVNFLVPSGILIAIDALS :::::::::::::::::::::::::::::: CCDS46 TRREWVLLGIQKRTIKVTVATNQYEQAIFHVAIRRRCRPSPYVVNFLVPSGILIAIDALS 150 160 170 180 190 200 40 50 60 70 80 90 pF1KE5 FYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPATSTSSHASLVRPHPSRDQKRGVYFAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 FYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPATSTSSHASLVRPHPSRDQKRGVYFAL 210 220 230 240 250 260 100 110 120 130 140 150 pF1KE5 CLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHSLLLHCTGQGRCCPTAPQKGNKGPGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 CLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHSLLLHCTGQGRCCPTAPQKGNKGPGL 270 280 290 300 310 320 160 170 180 190 200 210 pF1KE5 TPTHLPGVKEPEVSAGQMPGPGEAELTGGSEWTRAQREHEAQKQHSVELWVQFSHAMDAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 TPTHLPGVKEPEVSAGQMPGPGEAELTGGSEWTRAQREHEAQKQHSVELWVQFSHAMDAL 330 340 350 360 370 380 220 230 pF1KE5 LFRLYLLFMASSIITVICLWNT :::::::::::::::::::::: CCDS46 LFRLYLLFMASSIITVICLWNT 390 400 >>CCDS54685.1 HTR3D gene_id:200909|Hs108|chr3 (454 aa) initn: 1502 init1: 1029 opt: 1491 Z-score: 1532.4 bits: 291.8 E(32554): 4.9e-79 Smith-Waterman score: 1491; 95.3% identity (95.7% similar) in 234 aa overlap (2-233:221-454) 10 20 30 pF1KE5 MVAIRRRCRPSPYVVNFLVPSGILIAIDALS :::::::::::::::::::::::::::::: CCDS54 TRREWVLLGIQKRTIKVTVATNQYEQAIFHVAIRRRCRPSPYVVNFLVPSGILIAIDALS 200 210 220 230 240 250 40 50 60 70 80 pF1KE5 FYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPATSTSSHASLVRPHP--SRDQKRGVYF :::::::::::::::::::::::::::::::::::::::::::: : . :::: CCDS54 FYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPATSTSSHASLVAPLALMQTPLPAGVYF 260 270 280 290 300 310 90 100 110 120 130 140 pF1KE5 ALCLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHSLLLHCTGQGRCCPTAPQKGNKGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 ALCLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHSLLLHCTGQGRCCPTAPQKGNKGP 320 330 340 350 360 370 150 160 170 180 190 200 pF1KE5 GLTPTHLPGVKEPEVSAGQMPGPGEAELTGGSEWTRAQREHEAQKQHSVELWVQFSHAMD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 GLTPTHLPGVKEPEVSAGQMPGPGEAELTGGSEWTRAQREHEAQKQHSVELWVQFSHAMD 380 390 400 410 420 430 210 220 230 pF1KE5 ALLFRLYLLFMASSIITVICLWNT :::::::::::::::::::::::: CCDS54 ALLFRLYLLFMASSIITVICLWNT 440 450 >>CCDS58869.1 HTR3E gene_id:285242|Hs108|chr3 (441 aa) initn: 1262 init1: 974 opt: 974 Z-score: 1003.5 bits: 193.9 E(32554): 1.4e-49 Smith-Waterman score: 1248; 81.9% identity (90.5% similar) in 232 aa overlap (2-233:226-441) 10 20 30 pF1KE5 MVAIRRRCRPSPYVVNFLVPSGILIAIDALS ::::: ::: ::.:.:::::.:.:::::: CCDS58 THGEWELLGLSKATAKLSRGGNLYDQIVFYVAIRR--RPSLYVINLLVPSGFLVAIDALS 200 210 220 230 240 250 40 50 60 70 80 90 pF1KE5 FYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPATSTSSHASLVRPHPSRDQKRGVYFAL ::::..::: .:::.:.::::.::::::.::::...: :. :::::: CCDS58 FYLPVKSGNRVPFKITLLLGYNVFLLMMSDLLPTSGTP----LI----------GVYFAL 260 270 280 290 100 110 120 130 140 150 pF1KE5 CLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHSLLLHCTGQGRCCPTAPQKGNKGPGL :::::::::::::::::::::::::: :::::::::::::.. :::::::::: :::::: CCDS58 CLSLMVGSLLETIFITHLLHVATTQPPPLPRWLHSLLLHCNSPGRCCPTAPQKENKGPGL 300 310 320 330 340 350 160 170 180 190 200 210 pF1KE5 TPTHLPGVKEPEVSAGQMPGPGEAELTGGSEWTRAQREHEAQKQHSVELWVQFSHAMDAL :::::::::::::::::::::.::::::::::::::::::::::::::::.::::::::. CCDS58 TPTHLPGVKEPEVSAGQMPGPAEAELTGGSEWTRAQREHEAQKQHSVELWLQFSHAMDAM 360 370 380 390 400 410 220 230 pF1KE5 LFRLYLLFMASSIITVICLWNT :::::::::::::::::::::: CCDS58 LFRLYLLFMASSIITVICLWNT 420 430 440 >>CCDS58868.1 HTR3E gene_id:285242|Hs108|chr3 (456 aa) initn: 1262 init1: 974 opt: 974 Z-score: 1003.3 bits: 193.9 E(32554): 1.5e-49 Smith-Waterman score: 1248; 81.9% identity (90.5% similar) in 232 aa overlap (2-233:241-456) 10 20 30 pF1KE5 MVAIRRRCRPSPYVVNFLVPSGILIAIDALS ::::: ::: ::.:.:::::.:.:::::: CCDS58 THGEWELLGLSKATAKLSRGGNLYDQIVFYVAIRR--RPSLYVINLLVPSGFLVAIDALS 220 230 240 250 260 40 50 60 70 80 90 pF1KE5 FYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPATSTSSHASLVRPHPSRDQKRGVYFAL ::::..::: .:::.:.::::.::::::.::::...: :. :::::: CCDS58 FYLPVKSGNRVPFKITLLLGYNVFLLMMSDLLPTSGTP----LI----------GVYFAL 270 280 290 300 310 100 110 120 130 140 150 pF1KE5 CLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHSLLLHCTGQGRCCPTAPQKGNKGPGL :::::::::::::::::::::::::: :::::::::::::.. :::::::::: :::::: CCDS58 CLSLMVGSLLETIFITHLLHVATTQPPPLPRWLHSLLLHCNSPGRCCPTAPQKENKGPGL 320 330 340 350 360 370 160 170 180 190 200 210 pF1KE5 TPTHLPGVKEPEVSAGQMPGPGEAELTGGSEWTRAQREHEAQKQHSVELWVQFSHAMDAL :::::::::::::::::::::.::::::::::::::::::::::::::::.::::::::. CCDS58 TPTHLPGVKEPEVSAGQMPGPAEAELTGGSEWTRAQREHEAQKQHSVELWLQFSHAMDAM 380 390 400 410 420 430 220 230 pF1KE5 LFRLYLLFMASSIITVICLWNT :::::::::::::::::::::: CCDS58 LFRLYLLFMASSIITVICLWNT 440 450 >>CCDS58870.1 HTR3E gene_id:285242|Hs108|chr3 (456 aa) initn: 1262 init1: 974 opt: 974 Z-score: 1003.3 bits: 193.9 E(32554): 1.5e-49 Smith-Waterman score: 1248; 81.9% identity (90.5% similar) in 232 aa overlap (2-233:241-456) 10 20 30 pF1KE5 MVAIRRRCRPSPYVVNFLVPSGILIAIDALS ::::: ::: ::.:.:::::.:.:::::: CCDS58 THGEWELLGLSKATAKLSRGGNLYDQIVFYVAIRR--RPSLYVINLLVPSGFLVAIDALS 220 230 240 250 260 40 50 60 70 80 90 pF1KE5 FYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPATSTSSHASLVRPHPSRDQKRGVYFAL ::::..::: .:::.:.::::.::::::.::::...: :. :::::: CCDS58 FYLPVKSGNRVPFKITLLLGYNVFLLMMSDLLPTSGTP----LI----------GVYFAL 270 280 290 300 310 100 110 120 130 140 150 pF1KE5 CLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHSLLLHCTGQGRCCPTAPQKGNKGPGL :::::::::::::::::::::::::: :::::::::::::.. :::::::::: :::::: CCDS58 CLSLMVGSLLETIFITHLLHVATTQPPPLPRWLHSLLLHCNSPGRCCPTAPQKENKGPGL 320 330 340 350 360 370 160 170 180 190 200 210 pF1KE5 TPTHLPGVKEPEVSAGQMPGPGEAELTGGSEWTRAQREHEAQKQHSVELWVQFSHAMDAL :::::::::::::::::::::.::::::::::::::::::::::::::::.::::::::. CCDS58 TPTHLPGVKEPEVSAGQMPGPAEAELTGGSEWTRAQREHEAQKQHSVELWLQFSHAMDAM 380 390 400 410 420 430 220 230 pF1KE5 LFRLYLLFMASSIITVICLWNT :::::::::::::::::::::: CCDS58 LFRLYLLFMASSIITVICLWNT 440 450 >>CCDS3251.1 HTR3E gene_id:285242|Hs108|chr3 (471 aa) initn: 1262 init1: 974 opt: 974 Z-score: 1003.1 bits: 193.9 E(32554): 1.5e-49 Smith-Waterman score: 1248; 81.9% identity (90.5% similar) in 232 aa overlap (2-233:256-471) 10 20 30 pF1KE5 MVAIRRRCRPSPYVVNFLVPSGILIAIDALS ::::: ::: ::.:.:::::.:.:::::: CCDS32 THGEWELLGLSKATAKLSRGGNLYDQIVFYVAIRR--RPSLYVINLLVPSGFLVAIDALS 230 240 250 260 270 280 40 50 60 70 80 90 pF1KE5 FYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPATSTSSHASLVRPHPSRDQKRGVYFAL ::::..::: .:::.:.::::.::::::.::::...: :. :::::: CCDS32 FYLPVKSGNRVPFKITLLLGYNVFLLMMSDLLPTSGTP----LI----------GVYFAL 290 300 310 320 100 110 120 130 140 150 pF1KE5 CLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHSLLLHCTGQGRCCPTAPQKGNKGPGL :::::::::::::::::::::::::: :::::::::::::.. :::::::::: :::::: CCDS32 CLSLMVGSLLETIFITHLLHVATTQPPPLPRWLHSLLLHCNSPGRCCPTAPQKENKGPGL 330 340 350 360 370 380 160 170 180 190 200 210 pF1KE5 TPTHLPGVKEPEVSAGQMPGPGEAELTGGSEWTRAQREHEAQKQHSVELWVQFSHAMDAL :::::::::::::::::::::.::::::::::::::::::::::::::::.::::::::. CCDS32 TPTHLPGVKEPEVSAGQMPGPAEAELTGGSEWTRAQREHEAQKQHSVELWLQFSHAMDAM 390 400 410 420 430 440 220 230 pF1KE5 LFRLYLLFMASSIITVICLWNT :::::::::::::::::::::: CCDS32 LFRLYLLFMASSIITVICLWNT 450 460 470 >>CCDS58871.1 HTR3E gene_id:285242|Hs108|chr3 (482 aa) initn: 1262 init1: 974 opt: 974 Z-score: 1002.9 bits: 193.9 E(32554): 1.5e-49 Smith-Waterman score: 1248; 81.9% identity (90.5% similar) in 232 aa overlap (2-233:267-482) 10 20 30 pF1KE5 MVAIRRRCRPSPYVVNFLVPSGILIAIDALS ::::: ::: ::.:.:::::.:.:::::: CCDS58 THGEWELLGLSKATAKLSRGGNLYDQIVFYVAIRR--RPSLYVINLLVPSGFLVAIDALS 240 250 260 270 280 290 40 50 60 70 80 90 pF1KE5 FYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPATSTSSHASLVRPHPSRDQKRGVYFAL ::::..::: .:::.:.::::.::::::.::::...: :. :::::: CCDS58 FYLPVKSGNRVPFKITLLLGYNVFLLMMSDLLPTSGTP----LI----------GVYFAL 300 310 320 330 340 100 110 120 130 140 150 pF1KE5 CLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHSLLLHCTGQGRCCPTAPQKGNKGPGL :::::::::::::::::::::::::: :::::::::::::.. :::::::::: :::::: CCDS58 CLSLMVGSLLETIFITHLLHVATTQPPPLPRWLHSLLLHCNSPGRCCPTAPQKENKGPGL 350 360 370 380 390 400 160 170 180 190 200 210 pF1KE5 TPTHLPGVKEPEVSAGQMPGPGEAELTGGSEWTRAQREHEAQKQHSVELWVQFSHAMDAL :::::::::::::::::::::.::::::::::::::::::::::::::::.::::::::. CCDS58 TPTHLPGVKEPEVSAGQMPGPAEAELTGGSEWTRAQREHEAQKQHSVELWLQFSHAMDAM 410 420 430 440 450 460 220 230 pF1KE5 LFRLYLLFMASSIITVICLWNT :::::::::::::::::::::: CCDS58 LFRLYLLFMASSIITVICLWNT 470 480 >>CCDS3250.1 HTR3C gene_id:170572|Hs108|chr3 (447 aa) initn: 813 init1: 527 opt: 530 Z-score: 549.0 bits: 109.8 E(32554): 2.9e-24 Smith-Waterman score: 982; 69.8% identity (79.3% similar) in 232 aa overlap (2-233:241-447) 10 20 30 pF1KE5 MVAIRRRCRPSPYVVNFLVPSGILIAIDALS ::::: ::: :..:.::::..:.:::::: CCDS32 TQGEWELLGINKATPKMSMGNNLYDQIMFYVAIRR--RPSLYIINLLVPSSFLVAIDALS 220 230 240 250 260 40 50 60 70 80 90 pF1KE5 FYLPLESGNCAPFKMTVLLGYSVFLLMMNDLLPATSTSSHASLVRPHPSRDQKRGVYFAL :::: :: : ::::.:.::::.::::::::::::..: : : ::::: CCDS32 FYLPAESENRAPFKITLLLGYNVFLLMMNDLLPASGT--------PLIS------VYFAL 270 280 290 300 310 100 110 120 130 140 150 pF1KE5 CLSLMVGSLLETIFITHLLHVATTQPLPLPRWLHSLLLHCTGQGRCCPTAPQKGNKGPGL :::::: :::::.:::.::::::::: :.::::::::::::. :::::::::::::: :: CCDS32 CLSLMVVSLLETVFITYLLHVATTQPPPMPRWLHSLLLHCTSPGRCCPTAPQKGNKGLGL 320 330 340 350 360 370 160 170 180 190 200 210 pF1KE5 TPTHLPGVKEPEVSAGQMPGPGEAELTGGSEWTRAQREHEAQKQHSVELWVQFSHAMDAL : ::::: ::: ::. :: :.: ::: ::..: .:::::::::::.: CCDS32 TLTHLPGPKEPGELAGKKLGPRETEPDGGSGWTKTQL---------MELWVQFSHAMDTL 380 390 400 410 420 220 230 pF1KE5 LFRLYLLFMASSIITVICLWNT :::::::::::::.::: :::: CCDS32 LFRLYLLFMASSILTVIVLWNT 430 440 233 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 23:26:24 2016 done: Mon Nov 7 23:26:24 2016 Total Scan time: 1.830 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]