FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5335, 268 aa
  1>>>pF1KE5335 268 - 268 aa - 268 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.1123+/-0.000884; mu= 2.0256+/- 0.053
 mean_var=146.3361+/-29.455, 0's: 0 Z-trim(111.2): 22  B-trim: 176 in 1/53
 Lambda= 0.106023
 statistics sampled from 12202 (12216) to 12202 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.719), E-opt: 0.2 (0.375), width:  16
 Scan time:  2.470

The best scores are:                                      opt bits E(32554)
CCDS5941.2 RBM33 gene_id:155435|Hs108|chr7         (1170) 1601 256.3 7.1e-68


>>CCDS5941.2 RBM33 gene_id:155435|Hs108|chr7              (1170 aa)
 initn: 1601 init1: 1601 opt: 1601  Z-score: 1332.1  bits: 256.3 E(32554): 7.1e-68
Smith-Waterman score: 1601; 100.0% identity (100.0% similar) in 246 aa overlap (1-246:1-246)

               10        20        30        40        50        60
pF1KE5 MAAALGASGGAGAGDDDFDQFDKPGAERSWRRRAADEDWDSELEDDLLGEDLLSGKKNQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MAAALGASGGAGAGDDDFDQFDKPGAERSWRRRAADEDWDSELEDDLLGEDLLSGKKNQS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 DLSDEELNDDLLQSDNEDEENFSSQGVTISLNATSGMVTSFELSDNTNDQSGEQESEYEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 DLSDEELNDDLLQSDNEDEENFSSQGVTISLNATSGMVTSFELSDNTNDQSGEQESEYEQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 EQGEDELVYHKSDGSELYTQEYPEEGQYEGHEAELTEDQIEYVEEPEEEQLYTDEVLDIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 EQGEDELVYHKSDGSELYTQEYPEEGQYEGHEAELTEDQIEYVEEPEEEQLYTDEVLDIE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 INEPLDEFTGGMETLELQKDIKEESDEEEEDDEESGRLRFKTERKEGTIIRLSDVTRERR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 INEPLDEFTGGMETLELQKDIKEESDEEEEDDEESGRLRFKTERKEGTIIRLSDVTRERR
              190       200       210       220       230       240

              250       260                                        
pF1KE5 NIPETLGNFFACLPSSFTLISTSSIVLL                                
       ::::::                                                      
CCDS59 NIPETLELSAEAKAALLEFEERERQHKQGRYSSRRGGRRGGPLMCRGVGDQRRESTERGR
              250       260       270       280       290       300




268 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:53:11 2016 done: Mon Nov  7 23:53:12 2016
 Total Scan time:  2.470 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]