FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2591, 541 aa 1>>>pF1KE2591 541 - 541 aa - 541 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.9786+/-0.000434; mu= -3.7873+/- 0.027 mean_var=233.3894+/-46.489, 0's: 0 Z-trim(117.3): 6 B-trim: 0 in 0/55 Lambda= 0.083953 statistics sampled from 29190 (29194) to 29190 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.342), width: 16 Scan time: 7.040 The best scores are: opt bits E(85289) XP_011533527 (OMIM: 615906) PREDICTED: RING finger ( 649) 3462 432.7 1.6e-120 XP_016876232 (OMIM: 615906) PREDICTED: RING finger ( 649) 3462 432.7 1.6e-120 NP_078822 (OMIM: 615906) RING finger protein 219 [ ( 726) 3462 432.8 1.8e-120 >>XP_011533527 (OMIM: 615906) PREDICTED: RING finger pro (649 aa) initn: 3461 init1: 3461 opt: 3462 Z-score: 2284.7 bits: 432.7 E(85289): 1.6e-120 Smith-Waterman score: 3462; 99.6% identity (99.6% similar) in 540 aa overlap (1-538:1-540) 10 20 30 40 50 60 pF1KE2 MLSHTVRKHLRKTRLELLHKEYEDEIDCLQKEVEELKSKNLSLESQIKTILDPLTLVQGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MLSHTVRKHLRKTRLELLHKEYEDEIDCLQKEVEELKSKNLSLESQIKTILDPLTLVQGN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 QNEDKHLVTDNPSKINPETVAEWKKKLRTANEIYEKVKDDVDKLKEANKKLKLENGGLVR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 QNEDKHLVTDNPSKINPETVAEWKKKLRTANEIYEKVKDDVDKLKEANKKLKLENGGLVR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 ENLRLKAEVDNRSPQKFGRFAVAALQSKVEQYERETNRLKKALERSDKYIEELESQVAQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ENLRLKAEVDNRSPQKFGRFAVAALQSKVEQYERETNRLKKALERSDKYIEELESQVAQL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 KNSSEEKEAMNSICQTALSADGKGSKGSEEDVVSKNQGDSARKQPGSSTSSSSHLAKPSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 KNSSEEKEAMNSICQTALSADGKGSKGSEEDVVSKNQGDSARKQPGSSTSSSSHLAKPSS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 SRLCDTSSARQESTSKADLNCSKNKDLYQEQVEVMLDVTDTSMDTYLEREWGNKPSDCVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SRLCDTSSARQESTSKADLNCSKNKDLYQEQVEVMLDVTDTSMDTYLEREWGNKPSDCVP 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 YKDEELYDLPAPCTPLSLSCLQLSTPENRESSVVQAGGSKKHSNHLRKLVFDDFCDSSNV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 YKDEELYDLPAPCTPLSLSCLQLSTPENRESSVVQAGGSKKHSNHLRKLVFDDFCDSSNV 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE2 SNKDSSEDDISRSENEKKSECFSSPKTGFWDCCSTSYAQNLDFESSEGNTIANSVGEISS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SNKDSSEDDISRSENEKKSECFSSPKTGFWDCCSTSYAQNLDFESSEGNTIANSVGEISS 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE2 KLSEKSGLCLSKRLNSIRSFEMNRTRTSSEASMDAAYLDKISELDSMMSESDNSKSPCNN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 KLSEKSGLCLSKRLNSIRSFEMNRTRTSSEASMDAAYLDKISELDSMMSESDNSKSPCNN 430 440 450 460 470 480 490 500 510 520 530 pF1KE2 GFKSLDLDGLSKSSQGSEFLEEPDKLEEKTELNLSKGSLTNDQLENGSEWKPTSFF--SP :::::::::::::::::::::::::::::::::::::::::::::::::::::::: :: XP_011 GFKSLDLDGLSKSSQGSEFLEEPDKLEEKTELNLSKGSLTNDQLENGSEWKPTSFFLLSP 490 500 510 520 530 540 540 pF1KE2 LSI XP_011 SDQEMNEDFSLHSSSCPVTNEIKPPSCLFQTEFSQGILLSSSHRLFEDQRFGSSLFKMSS 550 560 570 580 590 600 >>XP_016876232 (OMIM: 615906) PREDICTED: RING finger pro (649 aa) initn: 3461 init1: 3461 opt: 3462 Z-score: 2284.7 bits: 432.7 E(85289): 1.6e-120 Smith-Waterman score: 3462; 99.6% identity (99.6% similar) in 540 aa overlap (1-538:1-540) 10 20 30 40 50 60 pF1KE2 MLSHTVRKHLRKTRLELLHKEYEDEIDCLQKEVEELKSKNLSLESQIKTILDPLTLVQGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MLSHTVRKHLRKTRLELLHKEYEDEIDCLQKEVEELKSKNLSLESQIKTILDPLTLVQGN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 QNEDKHLVTDNPSKINPETVAEWKKKLRTANEIYEKVKDDVDKLKEANKKLKLENGGLVR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 QNEDKHLVTDNPSKINPETVAEWKKKLRTANEIYEKVKDDVDKLKEANKKLKLENGGLVR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 ENLRLKAEVDNRSPQKFGRFAVAALQSKVEQYERETNRLKKALERSDKYIEELESQVAQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 ENLRLKAEVDNRSPQKFGRFAVAALQSKVEQYERETNRLKKALERSDKYIEELESQVAQL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 KNSSEEKEAMNSICQTALSADGKGSKGSEEDVVSKNQGDSARKQPGSSTSSSSHLAKPSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KNSSEEKEAMNSICQTALSADGKGSKGSEEDVVSKNQGDSARKQPGSSTSSSSHLAKPSS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 SRLCDTSSARQESTSKADLNCSKNKDLYQEQVEVMLDVTDTSMDTYLEREWGNKPSDCVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SRLCDTSSARQESTSKADLNCSKNKDLYQEQVEVMLDVTDTSMDTYLEREWGNKPSDCVP 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 YKDEELYDLPAPCTPLSLSCLQLSTPENRESSVVQAGGSKKHSNHLRKLVFDDFCDSSNV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 YKDEELYDLPAPCTPLSLSCLQLSTPENRESSVVQAGGSKKHSNHLRKLVFDDFCDSSNV 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE2 SNKDSSEDDISRSENEKKSECFSSPKTGFWDCCSTSYAQNLDFESSEGNTIANSVGEISS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SNKDSSEDDISRSENEKKSECFSSPKTGFWDCCSTSYAQNLDFESSEGNTIANSVGEISS 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE2 KLSEKSGLCLSKRLNSIRSFEMNRTRTSSEASMDAAYLDKISELDSMMSESDNSKSPCNN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KLSEKSGLCLSKRLNSIRSFEMNRTRTSSEASMDAAYLDKISELDSMMSESDNSKSPCNN 430 440 450 460 470 480 490 500 510 520 530 pF1KE2 GFKSLDLDGLSKSSQGSEFLEEPDKLEEKTELNLSKGSLTNDQLENGSEWKPTSFF--SP :::::::::::::::::::::::::::::::::::::::::::::::::::::::: :: XP_016 GFKSLDLDGLSKSSQGSEFLEEPDKLEEKTELNLSKGSLTNDQLENGSEWKPTSFFLLSP 490 500 510 520 530 540 540 pF1KE2 LSI XP_016 SDQEMNEDFSLHSSSCPVTNEIKPPSCLFQTEFSQGILLSSSHRLFEDQRFGSSLFKMSS 550 560 570 580 590 600 >>NP_078822 (OMIM: 615906) RING finger protein 219 [Homo (726 aa) initn: 3461 init1: 3461 opt: 3462 Z-score: 2283.9 bits: 432.8 E(85289): 1.8e-120 Smith-Waterman score: 3462; 99.6% identity (99.6% similar) in 540 aa overlap (1-538:78-617) 10 20 30 pF1KE2 MLSHTVRKHLRKTRLELLHKEYEDEIDCLQ :::::::::::::::::::::::::::::: NP_078 NNSQCPACRVPITPENPCKEIIGGTSESEPMLSHTVRKHLRKTRLELLHKEYEDEIDCLQ 50 60 70 80 90 100 40 50 60 70 80 90 pF1KE2 KEVEELKSKNLSLESQIKTILDPLTLVQGNQNEDKHLVTDNPSKINPETVAEWKKKLRTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_078 KEVEELKSKNLSLESQIKTILDPLTLVQGNQNEDKHLVTDNPSKINPETVAEWKKKLRTA 110 120 130 140 150 160 100 110 120 130 140 150 pF1KE2 NEIYEKVKDDVDKLKEANKKLKLENGGLVRENLRLKAEVDNRSPQKFGRFAVAALQSKVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_078 NEIYEKVKDDVDKLKEANKKLKLENGGLVRENLRLKAEVDNRSPQKFGRFAVAALQSKVE 170 180 190 200 210 220 160 170 180 190 200 210 pF1KE2 QYERETNRLKKALERSDKYIEELESQVAQLKNSSEEKEAMNSICQTALSADGKGSKGSEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_078 QYERETNRLKKALERSDKYIEELESQVAQLKNSSEEKEAMNSICQTALSADGKGSKGSEE 230 240 250 260 270 280 220 230 240 250 260 270 pF1KE2 DVVSKNQGDSARKQPGSSTSSSSHLAKPSSSRLCDTSSARQESTSKADLNCSKNKDLYQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_078 DVVSKNQGDSARKQPGSSTSSSSHLAKPSSSRLCDTSSARQESTSKADLNCSKNKDLYQE 290 300 310 320 330 340 280 290 300 310 320 330 pF1KE2 QVEVMLDVTDTSMDTYLEREWGNKPSDCVPYKDEELYDLPAPCTPLSLSCLQLSTPENRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_078 QVEVMLDVTDTSMDTYLEREWGNKPSDCVPYKDEELYDLPAPCTPLSLSCLQLSTPENRE 350 360 370 380 390 400 340 350 360 370 380 390 pF1KE2 SSVVQAGGSKKHSNHLRKLVFDDFCDSSNVSNKDSSEDDISRSENEKKSECFSSPKTGFW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_078 SSVVQAGGSKKHSNHLRKLVFDDFCDSSNVSNKDSSEDDISRSENEKKSECFSSPKTGFW 410 420 430 440 450 460 400 410 420 430 440 450 pF1KE2 DCCSTSYAQNLDFESSEGNTIANSVGEISSKLSEKSGLCLSKRLNSIRSFEMNRTRTSSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_078 DCCSTSYAQNLDFESSEGNTIANSVGEISSKLSEKSGLCLSKRLNSIRSFEMNRTRTSSE 470 480 490 500 510 520 460 470 480 490 500 510 pF1KE2 ASMDAAYLDKISELDSMMSESDNSKSPCNNGFKSLDLDGLSKSSQGSEFLEEPDKLEEKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_078 ASMDAAYLDKISELDSMMSESDNSKSPCNNGFKSLDLDGLSKSSQGSEFLEEPDKLEEKT 530 540 550 560 570 580 520 530 540 pF1KE2 ELNLSKGSLTNDQLENGSEWKPTSFF--SPLSI :::::::::::::::::::::::::: :: NP_078 ELNLSKGSLTNDQLENGSEWKPTSFFLLSPSDQEMNEDFSLHSSSCPVTNEIKPPSCLFQ 590 600 610 620 630 640 541 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 16:42:46 2016 done: Tue Nov 8 16:42:47 2016 Total Scan time: 7.040 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]