FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2591, 541 aa 1>>>pF1KE2591 541 - 541 aa - 541 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.2618+/-0.00114; mu= 0.4771+/- 0.068 mean_var=200.8250+/-39.924, 0's: 0 Z-trim(109.0): 17 B-trim: 81 in 1/52 Lambda= 0.090503 statistics sampled from 10590 (10593) to 10590 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.676), E-opt: 0.2 (0.325), width: 16 Scan time: 2.420 The best scores are: opt bits E(32554) CCDS31997.1 RNF219 gene_id:79596|Hs108|chr13 ( 726) 3462 465.0 1.3e-130 >>CCDS31997.1 RNF219 gene_id:79596|Hs108|chr13 (726 aa) initn: 3461 init1: 3461 opt: 3462 Z-score: 2458.3 bits: 465.0 E(32554): 1.3e-130 Smith-Waterman score: 3462; 99.6% identity (99.6% similar) in 540 aa overlap (1-538:78-617) 10 20 30 pF1KE2 MLSHTVRKHLRKTRLELLHKEYEDEIDCLQ :::::::::::::::::::::::::::::: CCDS31 NNSQCPACRVPITPENPCKEIIGGTSESEPMLSHTVRKHLRKTRLELLHKEYEDEIDCLQ 50 60 70 80 90 100 40 50 60 70 80 90 pF1KE2 KEVEELKSKNLSLESQIKTILDPLTLVQGNQNEDKHLVTDNPSKINPETVAEWKKKLRTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 KEVEELKSKNLSLESQIKTILDPLTLVQGNQNEDKHLVTDNPSKINPETVAEWKKKLRTA 110 120 130 140 150 160 100 110 120 130 140 150 pF1KE2 NEIYEKVKDDVDKLKEANKKLKLENGGLVRENLRLKAEVDNRSPQKFGRFAVAALQSKVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 NEIYEKVKDDVDKLKEANKKLKLENGGLVRENLRLKAEVDNRSPQKFGRFAVAALQSKVE 170 180 190 200 210 220 160 170 180 190 200 210 pF1KE2 QYERETNRLKKALERSDKYIEELESQVAQLKNSSEEKEAMNSICQTALSADGKGSKGSEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 QYERETNRLKKALERSDKYIEELESQVAQLKNSSEEKEAMNSICQTALSADGKGSKGSEE 230 240 250 260 270 280 220 230 240 250 260 270 pF1KE2 DVVSKNQGDSARKQPGSSTSSSSHLAKPSSSRLCDTSSARQESTSKADLNCSKNKDLYQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 DVVSKNQGDSARKQPGSSTSSSSHLAKPSSSRLCDTSSARQESTSKADLNCSKNKDLYQE 290 300 310 320 330 340 280 290 300 310 320 330 pF1KE2 QVEVMLDVTDTSMDTYLEREWGNKPSDCVPYKDEELYDLPAPCTPLSLSCLQLSTPENRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 QVEVMLDVTDTSMDTYLEREWGNKPSDCVPYKDEELYDLPAPCTPLSLSCLQLSTPENRE 350 360 370 380 390 400 340 350 360 370 380 390 pF1KE2 SSVVQAGGSKKHSNHLRKLVFDDFCDSSNVSNKDSSEDDISRSENEKKSECFSSPKTGFW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 SSVVQAGGSKKHSNHLRKLVFDDFCDSSNVSNKDSSEDDISRSENEKKSECFSSPKTGFW 410 420 430 440 450 460 400 410 420 430 440 450 pF1KE2 DCCSTSYAQNLDFESSEGNTIANSVGEISSKLSEKSGLCLSKRLNSIRSFEMNRTRTSSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 DCCSTSYAQNLDFESSEGNTIANSVGEISSKLSEKSGLCLSKRLNSIRSFEMNRTRTSSE 470 480 490 500 510 520 460 470 480 490 500 510 pF1KE2 ASMDAAYLDKISELDSMMSESDNSKSPCNNGFKSLDLDGLSKSSQGSEFLEEPDKLEEKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 ASMDAAYLDKISELDSMMSESDNSKSPCNNGFKSLDLDGLSKSSQGSEFLEEPDKLEEKT 530 540 550 560 570 580 520 530 540 pF1KE2 ELNLSKGSLTNDQLENGSEWKPTSFF--SPLSI :::::::::::::::::::::::::: :: CCDS31 ELNLSKGSLTNDQLENGSEWKPTSFFLLSPSDQEMNEDFSLHSSSCPVTNEIKPPSCLFQ 590 600 610 620 630 640 541 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 16:42:46 2016 done: Tue Nov 8 16:42:46 2016 Total Scan time: 2.420 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]