FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6479, 475 aa 1>>>pF1KE6479 475 - 475 aa - 475 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3952+/-0.000967; mu= 17.1688+/- 0.058 mean_var=65.0096+/-12.918, 0's: 0 Z-trim(104.3): 16 B-trim: 0 in 0/50 Lambda= 0.159069 statistics sampled from 7847 (7856) to 7847 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.616), E-opt: 0.2 (0.241), width: 16 Scan time: 2.510 The best scores are: opt bits E(32554) CCDS12006.1 CNDP2 gene_id:55748|Hs108|chr18 ( 475) 3187 740.5 9.1e-214 CCDS54190.1 CNDP2 gene_id:55748|Hs108|chr18 ( 391) 2166 506.1 2.6e-143 CCDS12007.1 CNDP1 gene_id:84735|Hs108|chr18 ( 507) 1772 415.8 5.5e-116 >>CCDS12006.1 CNDP2 gene_id:55748|Hs108|chr18 (475 aa) initn: 3187 init1: 3187 opt: 3187 Z-score: 3951.2 bits: 740.5 E(32554): 9.1e-214 Smith-Waterman score: 3187; 100.0% identity (100.0% similar) in 475 aa overlap (1-475:1-475) 10 20 30 40 50 60 pF1KE6 MAALTTLFKYIDENQDRYIKKLAKWVAIQSVSAWPEKRGEIRRMMEVAAADVKQLGGSVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MAALTTLFKYIDENQDRYIKKLAKWVAIQSVSAWPEKRGEIRRMMEVAAADVKQLGGSVE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 LVDIGKQKLPDGSEIPLPPILLGRLGSDPQKKTVCIYGHLDVQPAALEDGWDSEPFTLVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 LVDIGKQKLPDGSEIPLPPILLGRLGSDPQKKTVCIYGHLDVQPAALEDGWDSEPFTLVE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 RDGKLYGRGSTDDKGPVAGWINALEAYQKTGQEIPVNVRFCLEGMEESGSEGLDELIFAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 RDGKLYGRGSTDDKGPVAGWINALEAYQKTGQEIPVNVRFCLEGMEESGSEGLDELIFAR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 KDTFFKDVDYVCISDNYWLGKKKPCITYGLRGICYFFIEVECSNKDLHSGVYGGSVHEAM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 KDTFFKDVDYVCISDNYWLGKKKPCITYGLRGICYFFIEVECSNKDLHSGVYGGSVHEAM 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 TDLILLMGSLVDKRGNILIPGINEAVAAVTEEEHKLYDDIDFDIEEFAKDVGAQILLHSH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 TDLILLMGSLVDKRGNILIPGINEAVAAVTEEEHKLYDDIDFDIEEFAKDVGAQILLHSH 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE6 KKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIPRKVVGKFSIRLVPNMTPEVVGEQVTSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 KKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIPRKVVGKFSIRLVPNMTPEVVGEQVTSY 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE6 LTKKFAELRSPNEFKVYMGHGGKPWVSDFSHPHYLAGRRAMKTVFGVEPDLTREGGSIPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 LTKKFAELRSPNEFKVYMGHGGKPWVSDFSHPHYLAGRRAMKTVFGVEPDLTREGGSIPV 370 380 390 400 410 420 430 440 450 460 470 pF1KE6 TLTFQEATGKNVMLLPVGSADDGAHSQNEKLNRYNYIEGTKMLAAYLYEVSQLKD ::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 TLTFQEATGKNVMLLPVGSADDGAHSQNEKLNRYNYIEGTKMLAAYLYEVSQLKD 430 440 450 460 470 >>CCDS54190.1 CNDP2 gene_id:55748|Hs108|chr18 (391 aa) initn: 2166 init1: 2166 opt: 2166 Z-score: 2686.2 bits: 506.1 E(32554): 2.6e-143 Smith-Waterman score: 2421; 82.3% identity (82.3% similar) in 475 aa overlap (1-475:1-391) 10 20 30 40 50 60 pF1KE6 MAALTTLFKYIDENQDRYIKKLAKWVAIQSVSAWPEKRGEIRRMMEVAAADVKQLGGSVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 MAALTTLFKYIDENQDRYIKKLAKWVAIQSVSAWPEKRGEIRRMMEVAAADVKQLGGSVE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 LVDIGKQKLPDGSEIPLPPILLGRLGSDPQKKTVCIYGHLDVQPAALEDGWDSEPFTLVE :::::::: CCDS54 LVDIGKQK---------------------------------------------------- 130 140 150 160 170 180 pF1KE6 RDGKLYGRGSTDDKGPVAGWINALEAYQKTGQEIPVNVRFCLEGMEESGSEGLDELIFAR :::::::::::::::::::::::::::: CCDS54 --------------------------------EIPVNVRFCLEGMEESGSEGLDELIFAR 70 80 90 190 200 210 220 230 240 pF1KE6 KDTFFKDVDYVCISDNYWLGKKKPCITYGLRGICYFFIEVECSNKDLHSGVYGGSVHEAM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 KDTFFKDVDYVCISDNYWLGKKKPCITYGLRGICYFFIEVECSNKDLHSGVYGGSVHEAM 100 110 120 130 140 150 250 260 270 280 290 300 pF1KE6 TDLILLMGSLVDKRGNILIPGINEAVAAVTEEEHKLYDDIDFDIEEFAKDVGAQILLHSH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 TDLILLMGSLVDKRGNILIPGINEAVAAVTEEEHKLYDDIDFDIEEFAKDVGAQILLHSH 160 170 180 190 200 210 310 320 330 340 350 360 pF1KE6 KKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIPRKVVGKFSIRLVPNMTPEVVGEQVTSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 KKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIPRKVVGKFSIRLVPNMTPEVVGEQVTSY 220 230 240 250 260 270 370 380 390 400 410 420 pF1KE6 LTKKFAELRSPNEFKVYMGHGGKPWVSDFSHPHYLAGRRAMKTVFGVEPDLTREGGSIPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 LTKKFAELRSPNEFKVYMGHGGKPWVSDFSHPHYLAGRRAMKTVFGVEPDLTREGGSIPV 280 290 300 310 320 330 430 440 450 460 470 pF1KE6 TLTFQEATGKNVMLLPVGSADDGAHSQNEKLNRYNYIEGTKMLAAYLYEVSQLKD ::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 TLTFQEATGKNVMLLPVGSADDGAHSQNEKLNRYNYIEGTKMLAAYLYEVSQLKD 340 350 360 370 380 390 >>CCDS12007.1 CNDP1 gene_id:84735|Hs108|chr18 (507 aa) initn: 1689 init1: 1689 opt: 1772 Z-score: 2195.8 bits: 415.8 E(32554): 5.5e-116 Smith-Waterman score: 1772; 53.2% identity (80.6% similar) in 474 aa overlap (2-473:33-506) 10 20 30 pF1KE6 MAALTTLFKYIDENQDRYIKKLAKWVAIQS- : : .:.::: .::.... : .::::.: CCDS12 PKLGRMAASLLAVLLLLLERGMFSSPSPPPALLEKVFQYIDLHQDEFVQTLKEWVAIESD 10 20 30 40 50 60 40 50 60 70 80 pF1KE6 -VSAWPEKRGEIRRMMEVAAADVKQLGGSVELVDIGKQKLPDGSEIPLPPILLGRLGSDP :. :. : :. ::: ::: ...::. : ::.: :.::::. .:.::..:..::::: CCDS12 SVQPVPRFRQELFRMMAVAADTLQRLGARVASVDMGPQQLPDGQSLPIPPVILAELGSDP 70 80 90 100 110 120 90 100 110 120 130 140 pF1KE6 QKKTVCIYGHLDVQPAALEDGWDSEPFTLVERDGKLYGRGSTDDKGPVAGWINALEAYQK : :::.::::::::: ::: ..:..:.: ::::::::.::.:::: .::::. :.. CCDS12 TKGTVCFYGHLDVQPADRGDGWLTDPYVLTEVDGKLYGRGATDNKGPVLAWINAVSAFRA 130 140 150 160 170 180 150 160 170 180 190 200 pF1KE6 TGQEIPVNVRFCLEGMEESGSEGLDELIFARKDTFFKDVDYVCISDNYWLGKKKPCITYG :..:::..: .:::::.:: .:.::. .:: ::. :::. :::: :....:: :::: CCDS12 LEQDLPVNIKFIIEGMEEAGSVALEELVEKEKDRFFSGVDYIVISDNLWISQRKPAITYG 190 200 210 220 230 240 210 220 230 240 250 260 pF1KE6 LRGICYFFIEVECSNKDLHSGVYGGSVHEAMTDLILLMGSLVDKRGNILIPGINEAVAAV :: ::..::.: ..:.:::..:: .:: :.::. :.:::::. :.::.::: . :. . CCDS12 TRGNSYFMVEVKCRDQDFHSGTFGGILHEPMADLVALLGSLVDSSGHILVPGIYDEVVPL 250 260 270 280 290 300 270 280 290 300 310 320 pF1KE6 TEEEHKLYDDIDFDIEEFAKDVGAQILLHSHKKDILMHRWRYPSLSLHGIEGAFSGSGAK :::: . : : .:.::. .. .. .: . :..:::: :::::::.:::::::. :.: CCDS12 TEEEINTYKAIHLDLEEYRNSSRVEKFLFDTKEEILMHLWRYPSLSIHGIEGAFDEPGTK 310 320 330 340 350 360 330 340 350 360 370 380 pF1KE6 TVIPRKVVGKFSIRLVPNMTPEVVGEQVTSYLTKKFAELRSPNEFKVYMGHGGKPWVSDF :::: .:.:::::::::.:. .: .::: .: :.. : :.. : : : .::.... CCDS12 TVIPGRVIGKFSIRLVPHMNVSAVEKQVTRHLEDVFSKRNSSNKMVVSMTLGLHPWIANI 370 380 390 400 410 420 390 400 410 420 430 440 pF1KE6 SHPHYLAGRRAMKTVFGVEPDLTREGGSIPVTLTFQEATGKNVMLLPVGSADDGAHSQNE . .:::..::..::::.:::. :.:..::.. ::: . :.:.:.:.:..::: ::::: CCDS12 DDTQYLAAKRAIRTVFGTEPDMIRDGSTIPIAKMFQEIVHKSVVLIPLGAVDDGEHSQNE 430 440 450 460 470 480 450 460 470 pF1KE6 KLNRYNYIEGTKMLAAYLYEVSQLKD :.::.:::::::..::.. :..:: CCDS12 KINRWNYIEGTKLFAAFFLEMAQLH 490 500 475 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 13:42:00 2016 done: Tue Nov 8 13:42:01 2016 Total Scan time: 2.510 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]