FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5656, 478 aa 1>>>pF1KE5656 478 - 478 aa - 478 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4192+/-0.000432; mu= 18.0468+/- 0.027 mean_var=77.5107+/-15.180, 0's: 0 Z-trim(111.6): 143 B-trim: 252 in 1/49 Lambda= 0.145678 statistics sampled from 20123 (20298) to 20123 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.608), E-opt: 0.2 (0.238), width: 16 Scan time: 8.170 The best scores are: opt bits E(85289) NP_009173 (OMIM: 605812) ATP-dependent RNA helicas ( 479) 3012 642.9 5.7e-184 XP_011521134 (OMIM: 605812) PREDICTED: ATP-depende ( 539) 3012 643.0 6.2e-184 XP_011521136 (OMIM: 605812) PREDICTED: ATP-depende ( 484) 2907 620.8 2.5e-177 NP_001244102 (OMIM: 605812) ATP-dependent RNA heli ( 370) 2410 516.3 5.7e-146 XP_006721190 (OMIM: 605812) PREDICTED: ATP-depende ( 370) 2410 516.3 5.7e-146 NP_001014449 (OMIM: 605812) ATP-dependent RNA heli ( 370) 2410 516.3 5.7e-146 XP_016878379 (OMIM: 605812) PREDICTED: ATP-depende ( 370) 2410 516.3 5.7e-146 NP_001244103 (OMIM: 605812) ATP-dependent RNA heli ( 370) 2410 516.3 5.7e-146 NP_001014451 (OMIM: 605812) ATP-dependent RNA heli ( 448) 2271 487.2 4.1e-137 NP_001244101 (OMIM: 605812) ATP-dependent RNA heli ( 453) 2271 487.2 4.1e-137 XP_011521135 (OMIM: 605812) PREDICTED: ATP-depende ( 508) 2271 487.2 4.5e-137 NP_001244104 (OMIM: 605812) ATP-dependent RNA heli ( 328) 2143 460.2 4e-129 XP_011541093 (OMIM: 607663) PREDICTED: ATP-depende ( 482) 2072 445.4 1.7e-124 NP_037396 (OMIM: 607663) ATP-dependent RNA helicas ( 483) 2072 445.4 1.7e-124 XP_011541092 (OMIM: 607663) PREDICTED: ATP-depende ( 486) 2072 445.4 1.7e-124 NP_001317367 (OMIM: 607663) ATP-dependent RNA heli ( 369) 1808 389.8 6.9e-108 NP_001958 (OMIM: 601102) eukaryotic initiation fac ( 407) 913 201.7 3.1e-51 NP_001407 (OMIM: 602641) eukaryotic initiation fac ( 406) 908 200.7 6.5e-51 NP_055555 (OMIM: 268305,608546) eukaryotic initiat ( 411) 870 192.7 1.7e-48 XP_005271474 (OMIM: 600326) PREDICTED: probable AT ( 483) 724 162.1 3.3e-39 NP_001244120 (OMIM: 600326) probable ATP-dependent ( 483) 724 162.1 3.3e-39 NP_004388 (OMIM: 600326) probable ATP-dependent RN ( 483) 724 162.1 3.3e-39 NP_004631 (OMIM: 142560) spliceosome RNA helicase ( 428) 716 160.3 9.5e-39 NP_542165 (OMIM: 142560) spliceosome RNA helicase ( 428) 716 160.3 9.5e-39 NP_001191439 (OMIM: 602641) eukaryotic initiation ( 347) 679 152.5 1.8e-36 NP_009135 (OMIM: 606168) probable ATP-dependent RN ( 824) 673 151.5 8.4e-36 XP_011523824 (OMIM: 268305,608546) PREDICTED: euka ( 390) 656 147.7 5.5e-35 NP_057439 (OMIM: 615428) probable ATP-dependent RN ( 455) 587 133.2 1.4e-30 XP_016879601 (OMIM: 613369) PREDICTED: ATP-depende ( 775) 553 126.3 3.1e-28 XP_006721720 (OMIM: 613369) PREDICTED: ATP-depende ( 938) 553 126.3 3.6e-28 XP_016879600 (OMIM: 613369) PREDICTED: ATP-depende ( 938) 553 126.3 3.6e-28 NP_031398 (OMIM: 613369) ATP-dependent RNA helicas ( 938) 553 126.3 3.6e-28 NP_987095 (OMIM: 613369) ATP-dependent RNA helicas ( 938) 553 126.3 3.6e-28 NP_060365 (OMIM: 616621) probable ATP-dependent RN ( 796) 551 125.8 4.3e-28 XP_011522561 (OMIM: 613369) PREDICTED: ATP-depende ( 674) 524 120.1 1.9e-26 XP_016857921 (OMIM: 174300,615464) PREDICTED: prob ( 619) 519 119.0 3.7e-26 XP_016857920 (OMIM: 174300,615464) PREDICTED: prob ( 619) 519 119.0 3.7e-26 XP_011508337 (OMIM: 174300,615464) PREDICTED: prob ( 619) 519 119.0 3.7e-26 NP_001026895 (OMIM: 174300,615464) probable ATP-de ( 619) 519 119.0 3.7e-26 XP_011540947 (OMIM: 600326) PREDICTED: probable AT ( 434) 514 117.9 5.8e-26 XP_011522534 (OMIM: 612500) PREDICTED: probable AT ( 581) 502 115.4 4.2e-25 NP_008941 (OMIM: 612500) probable ATP-dependent RN ( 599) 502 115.5 4.3e-25 NP_001278405 (OMIM: 612500) probable ATP-dependent ( 491) 493 113.5 1.4e-24 NP_076977 (OMIM: 611665) ATP-dependent RNA helicas ( 881) 495 114.1 1.6e-24 NP_001104792 (OMIM: 611665) ATP-dependent RNA heli ( 882) 495 114.1 1.6e-24 XP_016866492 (OMIM: 606286) PREDICTED: probable AT ( 439) 490 112.8 1.9e-24 XP_011534229 (OMIM: 606286) PREDICTED: probable AT ( 529) 490 112.9 2.2e-24 XP_011534230 (OMIM: 606286) PREDICTED: probable AT ( 529) 490 112.9 2.2e-24 XP_011534228 (OMIM: 606286) PREDICTED: probable AT ( 604) 490 112.9 2.5e-24 NP_061135 (OMIM: 606286) probable ATP-dependent RN ( 648) 490 113.0 2.6e-24 >>NP_009173 (OMIM: 605812) ATP-dependent RNA helicase DD (479 aa) initn: 2835 init1: 2835 opt: 3012 Z-score: 3423.9 bits: 642.9 E(85289): 5.7e-184 Smith-Waterman score: 3012; 96.0% identity (99.6% similar) in 479 aa overlap (1-478:1-479) 10 20 30 40 50 pF1KE5 MATDSWALAVDEQEAAVKSMTNLQIKEEKVKADTNG-IIKTSTTAEKTDEEEKEDRAAQS ::::::::::::::::..:..::..::::.: :::: ..::...:::::::::::::::: NP_009 MATDSWALAVDEQEAAAESLSNLHLKEEKIKPDTNGAVVKTNANAEKTDEEEKEDRAAQS 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE5 LLNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_009 LLNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQE 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE5 NALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRVEPSDRYPQCLCLSPTYELALQTGK ::::.:::::::::::::::::::::::::::::.:::...::::::::::::::::::: NP_009 NALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGK 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE5 VIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_009 VIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV 190 200 210 220 230 240 240 250 260 270 280 290 pF1KE5 LDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_009 LDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE 250 260 270 280 290 300 300 310 320 330 340 350 pF1KE5 EETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_009 EETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQV 310 320 330 340 350 360 360 370 380 390 400 410 pF1KE5 ALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_009 ALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDN 370 380 390 400 410 420 420 430 440 450 460 470 pF1KE5 ETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_009 ETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN 430 440 450 460 470 >>XP_011521134 (OMIM: 605812) PREDICTED: ATP-dependent R (539 aa) initn: 2835 init1: 2835 opt: 3012 Z-score: 3423.1 bits: 643.0 E(85289): 6.2e-184 Smith-Waterman score: 3012; 96.0% identity (99.6% similar) in 479 aa overlap (1-478:61-539) 10 20 30 pF1KE5 MATDSWALAVDEQEAAVKSMTNLQIKEEKV ::::::::::::::::..:..::..::::. XP_011 AEPAANPRSPRSLVPSLESTSTSVPPAPGTMATDSWALAVDEQEAAAESLSNLHLKEEKI 40 50 60 70 80 90 40 50 60 70 80 pF1KE5 KADTNG-IIKTSTTAEKTDEEEKEDRAAQSLLNKLIRSNLVDNTNQVEVLQRDPNSPLYS : :::: ..::...:::::::::::::::::::::::::::::::::::::::::::::: XP_011 KPDTNGAVVKTNANAEKTDEEEKEDRAAQSLLNKLIRSNLVDNTNQVEVLQRDPNSPLYS 100 110 120 130 140 150 90 100 110 120 130 140 pF1KE5 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVL ::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::: XP_011 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 160 170 180 190 200 210 150 160 170 180 190 200 pF1KE5 AMLSRVEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKIS ::::.:::...::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 AMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKIS 220 230 240 250 260 270 210 220 230 240 250 260 pF1KE5 EQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 EQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQM 280 290 300 310 320 330 270 280 290 300 310 320 pF1KE5 LLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGA 340 350 360 370 380 390 330 340 350 360 370 380 pF1KE5 ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT 400 410 420 430 440 450 390 400 410 420 430 440 pF1KE5 NVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMN 460 470 480 490 500 510 450 460 470 pF1KE5 ILNRIQEHFNKKIERLDTDDLDEIEKIAN ::::::::::::::::::::::::::::: XP_011 ILNRIQEHFNKKIERLDTDDLDEIEKIAN 520 530 >>XP_011521136 (OMIM: 605812) PREDICTED: ATP-dependent R (484 aa) initn: 2835 init1: 2835 opt: 2907 Z-score: 3304.5 bits: 620.8 E(85289): 2.5e-177 Smith-Waterman score: 2907; 95.9% identity (99.4% similar) in 463 aa overlap (17-478:22-484) 10 20 30 40 50 pF1KE5 MATDSWALAVDEQEAAVKSMTNLQIKEEKVKADTNG-IIKTSTTAEKTDEEEKED : ...::..::::.: :::: ..::...::::::::::: XP_011 MAGAAGRVQDRALRRFPITLPVGDLSNLHLKEEKIKPDTNGAVVKTNANAEKTDEEEKED 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE5 RAAQSLLNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 RAAQSLLNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRP 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE5 SKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRVEPSDRYPQCLCLSPTYELA :::::::::.:::::::::::::::::::::::::::::.:::...:::::::::::::: XP_011 SKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELA 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE5 LQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKK 190 200 210 220 230 240 240 250 260 270 280 290 pF1KE5 IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVI 250 260 270 280 290 300 300 310 320 330 340 350 pF1KE5 KLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 KLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSK 310 320 330 340 350 360 360 370 380 390 400 410 pF1KE5 EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKD 370 380 390 400 410 420 420 430 440 450 460 470 pF1KE5 GNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIE 430 440 450 460 470 480 pF1KE5 KIAN :::: XP_011 KIAN >>NP_001244102 (OMIM: 605812) ATP-dependent RNA helicase (370 aa) initn: 2410 init1: 2410 opt: 2410 Z-score: 2741.7 bits: 516.3 E(85289): 5.7e-146 Smith-Waterman score: 2410; 98.6% identity (100.0% similar) in 370 aa overlap (109-478:1-370) 80 90 100 110 120 130 pF1KE5 LQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQ :::::::::::::::.:::::::::::::: NP_001 MGFNRPSKIQENALPLMLAEPPQNLIAQSQ 10 20 30 140 150 160 170 180 190 pF1KE5 SGTGKTAAFVLAMLSRVEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR :::::::::::::::.:::...:::::::::::::::::::::::::::::::::::::: NP_001 SGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR 40 50 60 70 80 90 200 210 220 230 240 250 pF1KE5 GNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR 100 110 120 130 140 150 260 270 280 290 300 310 pF1KE5 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE 160 170 180 190 200 210 320 330 340 350 360 370 pF1KE5 KFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF 220 230 240 250 260 270 380 390 400 410 420 430 pF1KE5 REGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 REGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA 280 290 300 310 320 330 440 450 460 470 pF1KE5 VNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN :::::::::::::::::::::::::::::::::::::::: NP_001 VNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN 340 350 360 370 >>XP_006721190 (OMIM: 605812) PREDICTED: ATP-dependent R (370 aa) initn: 2410 init1: 2410 opt: 2410 Z-score: 2741.7 bits: 516.3 E(85289): 5.7e-146 Smith-Waterman score: 2410; 98.6% identity (100.0% similar) in 370 aa overlap (109-478:1-370) 80 90 100 110 120 130 pF1KE5 LQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQ :::::::::::::::.:::::::::::::: XP_006 MGFNRPSKIQENALPLMLAEPPQNLIAQSQ 10 20 30 140 150 160 170 180 190 pF1KE5 SGTGKTAAFVLAMLSRVEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR :::::::::::::::.:::...:::::::::::::::::::::::::::::::::::::: XP_006 SGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR 40 50 60 70 80 90 200 210 220 230 240 250 pF1KE5 GNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 GNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR 100 110 120 130 140 150 260 270 280 290 300 310 pF1KE5 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE 160 170 180 190 200 210 320 330 340 350 360 370 pF1KE5 KFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 KFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF 220 230 240 250 260 270 380 390 400 410 420 430 pF1KE5 REGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 REGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA 280 290 300 310 320 330 440 450 460 470 pF1KE5 VNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN :::::::::::::::::::::::::::::::::::::::: XP_006 VNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN 340 350 360 370 >>NP_001014449 (OMIM: 605812) ATP-dependent RNA helicase (370 aa) initn: 2410 init1: 2410 opt: 2410 Z-score: 2741.7 bits: 516.3 E(85289): 5.7e-146 Smith-Waterman score: 2410; 98.6% identity (100.0% similar) in 370 aa overlap (109-478:1-370) 80 90 100 110 120 130 pF1KE5 LQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQ :::::::::::::::.:::::::::::::: NP_001 MGFNRPSKIQENALPLMLAEPPQNLIAQSQ 10 20 30 140 150 160 170 180 190 pF1KE5 SGTGKTAAFVLAMLSRVEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR :::::::::::::::.:::...:::::::::::::::::::::::::::::::::::::: NP_001 SGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR 40 50 60 70 80 90 200 210 220 230 240 250 pF1KE5 GNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR 100 110 120 130 140 150 260 270 280 290 300 310 pF1KE5 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE 160 170 180 190 200 210 320 330 340 350 360 370 pF1KE5 KFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF 220 230 240 250 260 270 380 390 400 410 420 430 pF1KE5 REGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 REGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA 280 290 300 310 320 330 440 450 460 470 pF1KE5 VNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN :::::::::::::::::::::::::::::::::::::::: NP_001 VNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN 340 350 360 370 >>XP_016878379 (OMIM: 605812) PREDICTED: ATP-dependent R (370 aa) initn: 2410 init1: 2410 opt: 2410 Z-score: 2741.7 bits: 516.3 E(85289): 5.7e-146 Smith-Waterman score: 2410; 98.6% identity (100.0% similar) in 370 aa overlap (109-478:1-370) 80 90 100 110 120 130 pF1KE5 LQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQ :::::::::::::::.:::::::::::::: XP_016 MGFNRPSKIQENALPLMLAEPPQNLIAQSQ 10 20 30 140 150 160 170 180 190 pF1KE5 SGTGKTAAFVLAMLSRVEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR :::::::::::::::.:::...:::::::::::::::::::::::::::::::::::::: XP_016 SGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR 40 50 60 70 80 90 200 210 220 230 240 250 pF1KE5 GNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR 100 110 120 130 140 150 260 270 280 290 300 310 pF1KE5 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE 160 170 180 190 200 210 320 330 340 350 360 370 pF1KE5 KFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF 220 230 240 250 260 270 380 390 400 410 420 430 pF1KE5 REGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 REGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA 280 290 300 310 320 330 440 450 460 470 pF1KE5 VNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN :::::::::::::::::::::::::::::::::::::::: XP_016 VNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN 340 350 360 370 >>NP_001244103 (OMIM: 605812) ATP-dependent RNA helicase (370 aa) initn: 2410 init1: 2410 opt: 2410 Z-score: 2741.7 bits: 516.3 E(85289): 5.7e-146 Smith-Waterman score: 2410; 98.6% identity (100.0% similar) in 370 aa overlap (109-478:1-370) 80 90 100 110 120 130 pF1KE5 LQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQ :::::::::::::::.:::::::::::::: NP_001 MGFNRPSKIQENALPLMLAEPPQNLIAQSQ 10 20 30 140 150 160 170 180 190 pF1KE5 SGTGKTAAFVLAMLSRVEPSDRYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR :::::::::::::::.:::...:::::::::::::::::::::::::::::::::::::: NP_001 SGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR 40 50 60 70 80 90 200 210 220 230 240 250 pF1KE5 GNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR 100 110 120 130 140 150 260 270 280 290 300 310 pF1KE5 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE 160 170 180 190 200 210 320 330 340 350 360 370 pF1KE5 KFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERF 220 230 240 250 260 270 380 390 400 410 420 430 pF1KE5 REGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 REGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA 280 290 300 310 320 330 440 450 460 470 pF1KE5 VNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN :::::::::::::::::::::::::::::::::::::::: NP_001 VNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN 340 350 360 370 >>NP_001014451 (OMIM: 605812) ATP-dependent RNA helicase (448 aa) initn: 2464 init1: 2271 opt: 2271 Z-score: 2582.6 bits: 487.2 E(85289): 4.1e-137 Smith-Waterman score: 2735; 89.8% identity (93.1% similar) in 479 aa overlap (1-478:1-448) 10 20 30 40 50 pF1KE5 MATDSWALAVDEQEAAVKSMTNLQIKEEKVKADTNG-IIKTSTTAEKTDEEEKEDRAAQS ::::::::::::::::..:..::..::::.: :::: ..::...:::::::::::::::: NP_001 MATDSWALAVDEQEAAAESLSNLHLKEEKIKPDTNGAVVKTNANAEKTDEEEKEDRAAQS 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE5 LLNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQE ::::::::::::::::::::::::::::::::::::::: NP_001 LLNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRL--------------------- 70 80 90 120 130 140 150 160 170 pF1KE5 NALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRVEPSDRYPQCLCLSPTYELALQTGK ::::::::::::::::::::::::.:::...::::::::::::::::::: NP_001 ----------PQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGK 100 110 120 130 140 180 190 200 210 220 230 pF1KE5 VIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV 150 160 170 180 190 200 240 250 260 270 280 290 pF1KE5 LDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE 210 220 230 240 250 260 300 310 320 330 340 350 pF1KE5 EETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQV 270 280 290 300 310 320 360 370 380 390 400 410 pF1KE5 ALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDN 330 340 350 360 370 380 420 430 440 450 460 470 pF1KE5 ETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIEKIAN 390 400 410 420 430 440 >>NP_001244101 (OMIM: 605812) ATP-dependent RNA helicase (453 aa) initn: 2359 init1: 2271 opt: 2271 Z-score: 2582.6 bits: 487.2 E(85289): 4.1e-137 Smith-Waterman score: 2630; 89.4% identity (92.7% similar) in 463 aa overlap (17-478:22-453) 10 20 30 40 50 pF1KE5 MATDSWALAVDEQEAAVKSMTNLQIKEEKVKADTNG-IIKTSTTAEKTDEEEKED : ...::..::::.: :::: ..::...::::::::::: NP_001 MAGAAGRVQDRALRRFPITLPVGDLSNLHLKEEKIKPDTNGAVVKTNANAEKTDEEEKED 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE5 RAAQSLLNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRP :::::::::::::::::::::::::::::::::::::::::::: NP_001 RAAQSLLNKLIRSNLVDNTNQVEVLQRDPNSPLYSVKSFEELRL---------------- 70 80 90 100 120 130 140 150 160 170 pF1KE5 SKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRVEPSDRYPQCLCLSPTYELA ::::::::::::::::::::::::.:::...:::::::::::::: NP_001 ---------------PQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELA 110 120 130 140 180 190 200 210 220 230 pF1KE5 LQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKK 150 160 170 180 190 200 240 250 260 270 280 290 pF1KE5 IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVI 210 220 230 240 250 260 300 310 320 330 340 350 pF1KE5 KLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSK 270 280 290 300 310 320 360 370 380 390 400 410 pF1KE5 EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKD 330 340 350 360 370 380 420 430 440 450 460 470 pF1KE5 GNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEIE 390 400 410 420 430 440 pF1KE5 KIAN :::: NP_001 KIAN 450 478 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 05:35:12 2016 done: Tue Nov 8 05:35:13 2016 Total Scan time: 8.170 Total Display time: 0.050 Function used was FASTA [36.3.4 Apr, 2011]