Result of FASTA (ccds) for
pFN21AE2581
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2581, 1019 aa
1>>>pF1KE2581 1019 - 1019 aa - 1019 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.7320+/-0.000904; mu= 8.1342+/- 0.055
mean_var=202.0674+/-40.126, 0's: 0 Z-trim(114.1): 19 B-trim: 240 in 1/50
Lambda= 0.090225
statistics sampled from 14655 (14672) to 14655 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.756), E-opt: 0.2 (0.451), width: 16
Scan time: 4.100
The best scores are: opt bits E(32554)
CCDS4328.1 LARP1 gene_id:23367|Hs108|chr5 (1019) 7036 928.9 0
CCDS3738.1 LARP1B gene_id:55132|Hs108|chr4 ( 914) 2127 289.9 1.7e-77
CCDS64057.1 LARP1B gene_id:55132|Hs108|chr4 ( 335) 813 118.5 2.3e-26
CCDS47133.1 LARP1B gene_id:55132|Hs108|chr4 ( 358) 813 118.5 2.5e-26
>>CCDS4328.1 LARP1 gene_id:23367|Hs108|chr5 (1019 aa)
initn: 7036 init1: 7036 opt: 7036 Z-score: 4957.6 bits: 928.9 E(32554): 0
Smith-Waterman score: 7036; 100.0% identity (100.0% similar) in 1019 aa overlap (1-1019:1-1019)
10 20 30 40 50 60
pF1KE2 MLWRVLLSKRPPFPHPELDFQEAPIPSCPGRLPGRKNSVALAAAPRKEPTGDREKPLPFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MLWRVLLSKRPPFPHPELDFQEAPIPSCPGRLPGRKNSVALAAAPRKEPTGDREKPLPFP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 VLAPFSNPEHSAPAKVVRAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQSHKPQPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VLAPFSNPEHSAPAKVVRAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQSHKPQPT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 RKLPPKKDMKEQEKGEGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNKHKWVPLQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RKLPPKKDMKEQEKGEGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNKHKWVPLQI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 DMKPEVPREKLASRPTRPPEPRHIPANRGEIKGSESATYVPVAPPTPAWQPEIKPEPAWH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DMKPEVPREKLASRPTRPPEPRHIPANRGEIKGSESATYVPVAPPTPAWQPEIKPEPAWH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 DQDETSSVKSDGAGGARASFRGRGRGRGRGRGRGRGGTRTHFDYQFGYRKFDGVEGPRTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DQDETSSVKSDGAGGARASFRGRGRGRGRGRGRGRGGTRTHFDYQFGYRKFDGVEGPRTP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 KYMNNITYYFDNVSSTELYSVDQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KYMNNITYYFDNVSSTELYSVDQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 ITLIASFHRVQALTTDISLIFAALKDSKVVEIVDEKVRRREEPEKWPLPPIVDYSQTDFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ITLIASFHRVQALTTDISLIFAALKDSKVVEIVDEKVRRREEPEKWPLPPIVDYSQTDFS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 QLLNCPEFVPRQHYQKETESAPGSPRAVTPVPTKTEEVSNLKTLPKGLSASLPDLDSENW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QLLNCPEFVPRQHYQKETESAPGSPRAVTPVPTKTEEVSNLKTLPKGLSASLPDLDSENW
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE2 IEVKKRPRPSPARPKKSEESRFSHLTSLPQQLPSQQLMSKDQDEQEELDFLFDEEMEQMD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 IEVKKRPRPSPARPKKSEESRFSHLTSLPQQLPSQQLMSKDQDEQEELDFLFDEEMEQMD
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE2 GRKNTFTAWSDEESDYEIDDRDVNKILIVTQTPHYMRRHPGGDRTGNHTSRAKMSAELAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GRKNTFTAWSDEESDYEIDDRDVNKILIVTQTPHYMRRHPGGDRTGNHTSRAKMSAELAK
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE2 VINDGLFYYEQDLWAEKFEPEYSQIKQEVENFKKVNMISREQFDTLTPEPPVDPNQEVPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VINDGLFYYEQDLWAEKFEPEYSQIKQEVENFKKVNMISREQFDTLTPEPPVDPNQEVPP
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE2 GPPRFQQVPTDALANKLFGAPEPSTIARSLPTTVPESPNYRNTRTPRTPRTPQLKDSSQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GPPRFQQVPTDALANKLFGAPEPSTIARSLPTTVPESPNYRNTRTPRTPRTPQLKDSSQT
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE2 SRFYPVVKEGRTLDAKMPRKRKTRHSSNPPLESHVGWVMDSREHRPRTASISSSPSEGTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SRFYPVVKEGRTLDAKMPRKRKTRHSSNPPLESHVGWVMDSREHRPRTASISSSPSEGTP
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE2 TVGSYGCTPQSLPKFQHPSHELLKENGFTQHVYHKYRRRCLNERKRLGIGQSQEMNTLFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TVGSYGCTPQSLPKFQHPSHELLKENGFTQHVYHKYRRRCLNERKRLGIGQSQEMNTLFR
790 800 810 820 830 840
850 860 870 880 890 900
pF1KE2 FWSFFLRDHFNKKMYEEFKQLALEDAKEGYRYGLECLFRYYSYGLEKKFRLDIFKDFQEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 FWSFFLRDHFNKKMYEEFKQLALEDAKEGYRYGLECLFRYYSYGLEKKFRLDIFKDFQEE
850 860 870 880 890 900
910 920 930 940 950 960
pF1KE2 TVKDYEAGQLYGLEKFWAFLKYSKAKNLDIDPKLQEYLGKFRRLEDFRVDPPMGEEGNHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TVKDYEAGQLYGLEKFWAFLKYSKAKNLDIDPKLQEYLGKFRRLEDFRVDPPMGEEGNHK
910 920 930 940 950 960
970 980 990 1000 1010
pF1KE2 RHSVVAGGGGGEGRKRCPSQSSSRPAAMISQPPTPPTGQPVREDAKWTSQHSNTQTLGK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RHSVVAGGGGGEGRKRCPSQSSSRPAAMISQPPTPPTGQPVREDAKWTSQHSNTQTLGK
970 980 990 1000 1010
>>CCDS3738.1 LARP1B gene_id:55132|Hs108|chr4 (914 aa)
initn: 2584 init1: 1142 opt: 2127 Z-score: 1504.9 bits: 289.9 E(32554): 1.7e-77
Smith-Waterman score: 3508; 58.2% identity (79.6% similar) in 942 aa overlap (98-1013:3-914)
70 80 90 100 110 120
pF1KE2 PEHSAPAKVVRAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQSHKPQPTRKLPPKK
:::::.:... . : : : ..: .:
CCDS37 MENWPTPSELVNTGFQ--SVLSQGNKKPQNRK
10 20 30
130 140 150 160 170 180
pF1KE2 DMKEQ-EKGEGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNKHKWVPLQIDMKPEV
. .:. :: .:::::. .:: . ::. . :: : ..:.:..::::::::..:.
CCDS37 EKEEKVEKRSNSDSKENRETKLNGPGENVSEDE-AQSSNQRKRANKHKWVPLHLDVVRSE
40 50 60 70 80
190 200 210 220 230 240
pF1KE2 PREKLASRPTRPPEPRHIPANRGEIKGSESATYVPVAPPTPAWQPEIKPEPAWHDQDETS
.:. .:: . .:. ::. .. .. : .:. . . :::..:
CCDS37 SQERPGSRNSSRCQPE---ANKPTHNNRRNDTR--------SWK---RDREKRDDQDDVS
90 100 110 120 130
250 260 270 280 290 300
pF1KE2 SVKSDGAGGARASFRGRGRGRGRGRGRGRGGTRTHFDYQFGYRKF-DGVEGPRTPKYMNN
::.:.: :. :.::::::::::::::::::. : .:::..::.. . .. : . ..
CCDS37 SVRSEG-GNIRGSFRGRGRGRGRGRGRGRGNPRLNFDYSYGYQEHGERTDQPFQTELNTS
140 150 160 170 180 190
310 320 330 340 350 360
pF1KE2 ITYYFDNVSSTELYSVDQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIA
. ::.:. .....: :.. :::.::::::::::::.::::::::: ::: .:::::.:::
CCDS37 MMYYYDDGTGVQVYPVEEALLKEYIKRQIEYYFSVENLERDFFLRGKMDEQGFLPISLIA
200 210 220 230 240 250
370 380 390 400 410 420
pF1KE2 SFHRVQALTTDISLIFAALKDSKVVEIVDEKVRRREEPEKWPLP--PIVDYSQTDFSQLL
.:.:::::::...::. ::::: :::::::.:.. ::::::.: : . ::::::.
CCDS37 GFQRVQALTTNLNLILEALKDSTEVEIVDEKMRKKIEPEKWPIPGPPPRSVPPTDFSQLI
260 270 280 290 300 310
430 440 450 460 470 480
pF1KE2 NCPEFVPRQHYQKETESAPGSPRAVTPV-PTKTEEVSNLKTLPKGLSASLPDLDSENWIE
.:::::: : . ..:::::.::: .:. : :. :.: :... .:::.:::::::: :::
CCDS37 DCPEFVPGQAFCSHTESAPNSPRIGSPLSPKKNSETSILQAMSRGLSTSLPDLDSEPWIE
320 330 340 350 360 370
490 500 510 520 530 540
pF1KE2 VKKRPRPSPARPKKSEESRFSHLTSLPQQLPSQQLMSKDQDEQEELDFLFDEEMEQMDGR
:::: .:.:.. ..: .:.:. .:: :... ::::::::::::.::. ::
CCDS37 VKKRHQPAPVKLRES--------VSVPEG-SLNQLCSSEEPEQEELDFLFDEEIEQI-GR
380 390 400 410 420
550 560 570 580 590 600
pF1KE2 KNTFTAWSDEESDYEIDDRDVNKILIVTQTPHYMRRHPGGDRTGNHTSRAKMSAELAKVI
::::: :::..:::::::.:.:::::::::: :...::::::::.: ::::...::::::
CCDS37 KNTFTDWSDNDSDYEIDDQDLNKILIVTQTPPYVKKHPGGDRTGTHMSRAKITSELAKVI
430 440 450 460 470 480
610 620 630 640 650 660
pF1KE2 NDGLFYYEQDLWAEKFEPEYSQIKQEVENFKKVNMISREQFDTLTPEPPVDPNQEVPPGP
::::.::::::: :. : ... ::::::::::.:.::.:::..:::: : .:::::: .:
CCDS37 NDGLYYYEQDLWMEEDENKHTAIKQEVENFKKLNLISKEQFENLTPELPFEPNQEVPVAP
490 500 510 520 530 540
670 680 690 700
pF1KE2 PRFQQ--------VP----TDALANKLFGAPEPSTIA--RSLPTTVPESPNYRNTRTPRT
. .: .: :: ::.::: . : .. : .::::.::::: . ::::.:
CCDS37 SQSRQGGVQGVLHIPKKDLTDELAQKLFDVSEITSAAMVHSLPTAVPESPRIHPTRTPKT
550 560 570 580 590 600
710 720 730 740 750 760
pF1KE2 PRTPQLKDSSQTSRFYPVVKEGRTLDAKMPRKRKTRHSSNPPLESHVGWVMDSREHRPRT
::::.:.: ..: :::::::: ...:.: :::::::::.::::: :::::::::.. : :
CCDS37 PRTPRLQDPNKTPRFYPVVKEPKAIDVKSPRKRKTRHSTNPPLECHVGWVMDSRDRGPGT
610 620 630 640 650 660
770 780 790 800 810 820
pF1KE2 ASISSS---PSEGTPTVGSYGCTPQSLPKFQHPSHELLKENGFTQHVYHKYRRRCLNERK
.:.:.: ::::.: .:::::::.:.::::::::::::::::::.::::::::::.:::
CCDS37 SSVSTSNASPSEGAPLAGSYGCTPHSFPKFQHPSHELLKENGFTQQVYHKYRRRCLSERK
670 680 690 700 710 720
830 840 850 860 870 880
pF1KE2 RLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEFKQLALEDAKEGYRYGLECLFRYYSYGL
:::::::::::::::::::::::::::::::::.::: :::::.::::::::::.:::::
CCDS37 RLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEFRQLAWEDAKENYRYGLECLFRFYSYGL
730 740 750 760 770 780
890 900 910 920 930 940
pF1KE2 EKKFRLDIFKDFQEETVKDYEAGQLYGLEKFWAFLKYSKAKNLDIDPKLQEYLGKFRRLE
::::: .::.:::::: ::::.:::::::::::.::::..:. .::::::::: .:.:::
CCDS37 EKKFRREIFQDFQEETKKDYESGQLYGLEKFWAYLKYSQSKTQSIDPKLQEYLCSFKRLE
790 800 810 820 830 840
950 960 970 980 990 1000
pF1KE2 DFRVDPPMGEEGNHKRHSVVAGGGGGEGRKRCPSQSSSRPAAMISQPPTP----PTGQPV
:::::::...: ..:::: ..: . .:.: : .::..: . : : ..:
CCDS37 DFRVDPPISDEFGRKRHSSTSGEES--NRHRLPPNSSTKPPNAAKPTSTSELQVPINSPR
850 860 870 880 890 900
1010
pF1KE2 REDAKWTSQHSNTQTLGK
:. . .:..:.
CCDS37 RNISPESSDNSH
910
>>CCDS64057.1 LARP1B gene_id:55132|Hs108|chr4 (335 aa)
initn: 948 init1: 484 opt: 813 Z-score: 586.7 bits: 118.5 E(32554): 2.3e-26
Smith-Waterman score: 992; 48.1% identity (72.8% similar) in 345 aa overlap (98-438:3-329)
70 80 90 100 110 120
pF1KE2 PEHSAPAKVVRAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQSHKPQPTRKLPPKK
:::::.:... . :: : ..: .:
CCDS64 MENWPTPSELVNTGF--QSVLSQGNKKPQNRK
10 20 30
130 140 150 160 170 180
pF1KE2 DMKEQ-EKGEGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNKHKWVPLQIDMKPEV
. .:. :: .:::::. .:: . ::. . :: : ..:.:..::::::::..:.
CCDS64 EKEEKVEKRSNSDSKENRETKLNGPGENVSEDE-AQSSNQRKRANKHKWVPLHLDVVRSE
40 50 60 70 80
190 200 210 220 230 240
pF1KE2 PREKLASRPTRPPEPRHIPANRGEIKGSESATYVPVAPPTPAWQPEIKPEPAWHDQDETS
.:. .:: . .:. ::. :. : .:. . . :::..:
CCDS64 SQERPGSRNSSRCQPE---ANK--------PTHNNRRNDTRSWK---RDREKRDDQDDVS
90 100 110 120 130
250 260 270 280 290 300
pF1KE2 SVKSDGAGGARASFRGRGRGRGRGRGRGRGGTRTHFDYQFGYRKF-DGVEGPRTPKYMNN
::.:.: :. :.::::::::::::::::::. : .:::..::.. . .. : . ..
CCDS64 SVRSEG-GNIRGSFRGRGRGRGRGRGRGRGNPRLNFDYSYGYQEHGERTDQPFQTELNTS
140 150 160 170 180 190
310 320 330 340 350 360
pF1KE2 ITYYFDNVSSTELYSVDQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIA
. ::.:. .....: :.. :::.::::::::::::.::::::::: ::: .:::::.:::
CCDS64 MMYYYDDGTGVQVYPVEEALLKEYIKRQIEYYFSVENLERDFFLRGKMDEQGFLPISLIA
200 210 220 230 240 250
370 380 390 400 410 420
pF1KE2 SFHRVQALTTDISLIFAALKDSKVVEIVDEKVRRREEPEKWPLP--PIVDYSQTDFSQLL
.:.:::::::...::. ::::: :::::::.:.. ::::::.: : . ::::::.
CCDS64 GFQRVQALTTNLNLILEALKDSTEVEIVDEKMRKKIEPEKWPIPGPPPRSVPPTDFSQLI
260 270 280 290 300 310
430 440 450 460 470 480
pF1KE2 NCPEFVPRQHYQKETESAPGSPRAVTPVPTKTEEVSNLKTLPKGLSASLPDLDSENWIEV
.:::::: : . ..:
CCDS64 DCPEFVPGQAFCSHTVRVMIF
320 330
>>CCDS47133.1 LARP1B gene_id:55132|Hs108|chr4 (358 aa)
initn: 948 init1: 484 opt: 813 Z-score: 586.3 bits: 118.5 E(32554): 2.5e-26
Smith-Waterman score: 992; 48.1% identity (72.8% similar) in 345 aa overlap (98-438:3-329)
70 80 90 100 110 120
pF1KE2 PEHSAPAKVVRAAVPKQRKGSKVGDFGDAINWPTPGEIAHKSVQPQSHKPQPTRKLPPKK
:::::.:... . :: : ..: .:
CCDS47 MENWPTPSELVNTGF--QSVLSQGNKKPQNRK
10 20 30
130 140 150 160 170 180
pF1KE2 DMKEQ-EKGEGSDSKESPKTKSDESGEEKNGDEDCQRGGQKKKGNKHKWVPLQIDMKPEV
. .:. :: .:::::. .:: . ::. . :: : ..:.:..::::::::..:.
CCDS47 EKEEKVEKRSNSDSKENRETKLNGPGENVSEDE-AQSSNQRKRANKHKWVPLHLDVVRSE
40 50 60 70 80
190 200 210 220 230 240
pF1KE2 PREKLASRPTRPPEPRHIPANRGEIKGSESATYVPVAPPTPAWQPEIKPEPAWHDQDETS
.:. .:: . .:. ::. :. : .:. . . :::..:
CCDS47 SQERPGSRNSSRCQPE---ANK--------PTHNNRRNDTRSWK---RDREKRDDQDDVS
90 100 110 120 130
250 260 270 280 290 300
pF1KE2 SVKSDGAGGARASFRGRGRGRGRGRGRGRGGTRTHFDYQFGYRKF-DGVEGPRTPKYMNN
::.:.: :. :.::::::::::::::::::. : .:::..::.. . .. : . ..
CCDS47 SVRSEG-GNIRGSFRGRGRGRGRGRGRGRGNPRLNFDYSYGYQEHGERTDQPFQTELNTS
140 150 160 170 180 190
310 320 330 340 350 360
pF1KE2 ITYYFDNVSSTELYSVDQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLIA
. ::.:. .....: :.. :::.::::::::::::.::::::::: ::: .:::::.:::
CCDS47 MMYYYDDGTGVQVYPVEEALLKEYIKRQIEYYFSVENLERDFFLRGKMDEQGFLPISLIA
200 210 220 230 240 250
370 380 390 400 410 420
pF1KE2 SFHRVQALTTDISLIFAALKDSKVVEIVDEKVRRREEPEKWPLP--PIVDYSQTDFSQLL
.:.:::::::...::. ::::: :::::::.:.. ::::::.: : . ::::::.
CCDS47 GFQRVQALTTNLNLILEALKDSTEVEIVDEKMRKKIEPEKWPIPGPPPRSVPPTDFSQLI
260 270 280 290 300 310
430 440 450 460 470 480
pF1KE2 NCPEFVPRQHYQKETESAPGSPRAVTPVPTKTEEVSNLKTLPKGLSASLPDLDSENWIEV
.:::::: : . ..:
CCDS47 DCPEFVPGQAFCSHTGNIFSSRANDVTVGYLVQFTYLFIYFQFI
320 330 340 350
1019 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 16:30:26 2016 done: Tue Nov 8 16:30:27 2016
Total Scan time: 4.100 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]