FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5360, 260 aa 1>>>pF1KE5360 260 - 260 aa - 260 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.8070+/-0.000625; mu= 9.2329+/- 0.038 mean_var=107.4820+/-21.603, 0's: 0 Z-trim(115.1): 3 B-trim: 829 in 1/51 Lambda= 0.123710 statistics sampled from 15621 (15623) to 15621 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.805), E-opt: 0.2 (0.48), width: 16 Scan time: 2.330 The best scores are: opt bits E(32554) CCDS33938.1 UVSSA gene_id:57654|Hs108|chr4 ( 709) 1786 328.5 7.6e-90 >>CCDS33938.1 UVSSA gene_id:57654|Hs108|chr4 (709 aa) initn: 1786 init1: 1786 opt: 1786 Z-score: 1726.4 bits: 328.5 E(32554): 7.6e-90 Smith-Waterman score: 1786; 100.0% identity (100.0% similar) in 260 aa overlap (1-260:450-709) 10 20 30 pF1KE5 MDEEVSDPTSAAAQLRQLRDHLPPPSSASP :::::::::::::::::::::::::::::: CCDS33 HIPDHLRPEYGLEAAPEKDTVVRCLRTRTRMDEEVSDPTSAAAQLRQLRDHLPPPSSASP 420 430 440 450 460 470 40 50 60 70 80 90 pF1KE5 SRALPEPQEAQKLAAERARAPVVPYGVDLHYWGQELPTAGKIVKSDSQHRFWKPSEVEEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 SRALPEPQEAQKLAAERARAPVVPYGVDLHYWGQELPTAGKIVKSDSQHRFWKPSEVEEE 480 490 500 510 520 530 100 110 120 130 140 150 pF1KE5 VVNADISEMLRSRHITFAGKFEPVQHWCRAPRPDGRLCERQDRLKCPFHGKIVPRDDEGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 VVNADISEMLRSRHITFAGKFEPVQHWCRAPRPDGRLCERQDRLKCPFHGKIVPRDDEGR 540 550 560 570 580 590 160 170 180 190 200 210 pF1KE5 PLDPEDRAREQRRQLQKQERPEWQDPELMRDVEAATGQDLGSSRYSGKGRGKKRRYPSLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 PLDPEDRAREQRRQLQKQERPEWQDPELMRDVEAATGQDLGSSRYSGKGRGKKRRYPSLT 600 610 620 630 640 650 220 230 240 250 260 pF1KE5 NLKAQADTARARIGRKVFAKAAVRRVVAAMNRMDQKKHEKFSNQFNYALN :::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 NLKAQADTARARIGRKVFAKAAVRRVVAAMNRMDQKKHEKFSNQFNYALN 660 670 680 690 700 260 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 00:06:21 2016 done: Tue Nov 8 00:06:22 2016 Total Scan time: 2.330 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]