(Circular) (Six-base) MAPSORT of: pFN21AE6651.seq Check: 8050 from: 1 to: 5443 pFN21AE6651 5443 bp With 182 enzymes: SgfI * March 18, 2015 14:53 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 2164 3253 278 Size: 53 83 186 936 628 1089 2468 Fragments arranged by size: 2468 1089 936 628 186 83 53 AccI GT'mk_AC Cuts at: 1937 2182 2786 1937 Size: 245 604 4594 Fragments arranged by size: 4594 604 245 Acc65I G'GTAC_C Cuts at: 2764 2764 Size: 5443 AclI AA'CG_TT Cuts at: 1563 2301 3570 3943 1563 Size: 738 1269 373 3063 Fragments arranged by size: 3063 1269 738 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2177 3506 4890 5158 1632 Size: 545 1329 1384 268 1917 Fragments arranged by size: 1917 1384 1329 545 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5246 AflIII A'CryG_T Cuts at: 1203 4342 5319 1203 Size: 3139 977 1327 Fragments arranged by size: 3139 1327 977 AgeI A'CCGG_T Cuts at: 4274 4274 Size: 5443 AhdI GACnn_n'nnGTC Cuts at: 2674 4172 2674 Size: 1498 3945 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5443 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5443 AlwNI CAG_nnn'CTG Cuts at: 3186 4758 3186 Size: 1572 3871 ApaLI G'TGCA_C Cuts at: 3500 4656 3500 Size: 1156 4287 ApoI r'AATT_y Cuts at: 1493 2419 2691 2752 2978 3130 5239 1493 Size: 926 272 61 226 152 2109 1697 Fragments arranged by size: 2109 1697 926 272 226 152 61 AseI AT'TA_AT Cuts at: 160 1032 3997 160 Size: 872 2965 1606 Fragments arranged by size: 2965 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5443 AvaI C'yCGr_G Cuts at: 1870 1943 2072 2739 2768 1870 Size: 73 129 667 29 4545 Fragments arranged by size: 4545 667 129 73 29 BamHI G'GATC_C Cuts at: 2640 2773 3140 2640 Size: 133 367 4943 Fragments arranged by size: 4943 367 133 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2061 2764 4219 618 Size: 325 217 627 274 703 1455 1842 Fragments arranged by size: 1842 1455 703 627 325 274 217 BanII G_rGCy'C Cuts at: 1391 2762 1391 Size: 1371 4072 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4472 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3634 3668 1903 Size: 34 1697 34 3678 Fragments arranged by size: 3678 1697 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3335 4545 3335 Size: 1210 4233 BclI T'GATC_A Cuts at: 1548 2710 1548 Size: 1162 4281 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4054 136 Size: 107 122 71 631 605 2382 1525 Fragments arranged by size: 2382 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 2600 5438 2600 Size: 2838 2605 BlpI GC'TnA_GC Cuts at: 2860 2860 Size: 5443 Bme1580I G_kGCm'C Cuts at: 1790 2052 3504 4660 1790 Size: 262 1452 1156 2573 Fragments arranged by size: 2573 1452 1156 262 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5443 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2417 3174 4132 Size: 416 53 83 399 24 1000 757 958 Cuts at: 4132 442 Size: 1753 Fragments arranged by size: 1753 1000 958 757 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5443 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 4103 1239 Size: 2864 2579 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2435 3568 4433 4731 2435 Size: 1133 865 298 3147 Fragments arranged by size: 3147 1133 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2615 4106 882 Size: 617 1116 1491 2219 Fragments arranged by size: 2219 1491 1116 617 BsaAI yAC'GTr Cuts at: 493 1204 3234 493 Size: 711 2030 2702 Fragments arranged by size: 2702 2030 711 BsaBI GATnn'nnATC Cuts at: 5437 5437 Size: 5443 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2161 3250 3632 4267 Size: 53 83 186 936 628 1089 382 635 Cuts at: 4267 275 Size: 1451 Fragments arranged by size: 1451 1089 936 635 628 382 186 83 53 BsaWI w'CCGG_w Cuts at: 2703 3876 4274 4548 4695 5106 2703 Size: 1173 398 274 147 411 3040 Fragments arranged by size: 3040 1173 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5218 Fragments arranged by size: 5218 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2123 2134 1186 Size: 937 11 4495 Fragments arranged by size: 4495 937 11 BseYI C'CCAG_C Cuts at: 2010 4646 5142 2010 Size: 2636 496 2311 Fragments arranged by size: 2636 2311 496 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4870 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2893 3654 4682 1540 Size: 275 186 892 761 1028 2301 Fragments arranged by size: 2301 1028 892 761 275 186 BsiHKAI G_wGCw'C Cuts at: 3504 3589 4660 3504 Size: 85 1071 4287 Fragments arranged by size: 4287 1071 85 BsmI GAATG_Cn' Cuts at: 2954 3047 2954 Size: 93 5350 BsmBI CGTCTCn'nnnn_ Cuts at: 2168 2168 Size: 5443 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2052 2762 3504 3589 4660 1391 Size: 399 262 710 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 710 399 262 85 BspEI T'CCGG_A Cuts at: 5106 5106 Size: 5443 BspHI T'CATG_A Cuts at: 3332 5062 3332 Size: 1730 3713 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2798 844 Size: 1954 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3330 1394 Size: 429 1507 3507 Fragments arranged by size: 3507 1507 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3938 4112 65 Size: 1183 2690 174 1396 Fragments arranged by size: 2690 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2064 4087 4274 1700 Size: 110 254 2023 187 2869 Fragments arranged by size: 2869 2023 254 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5443 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5443 BssSI C'ACGA_G Cuts at: 3503 4515 3503 Size: 1012 4431 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5443 BstBI TT'CG_AA Cuts at: 4247 4247 Size: 5443 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5443 BstXI CCAn_nnnn'nTGG Cuts at: 2231 2231 Size: 5443 BstYI r'GATC_y Cuts at: 1972 2140 2600 2640 2773 3140 3525 3542 4994 Size: 168 460 40 133 367 385 17 1452 Cuts at: 4994 5080 5092 5438 1972 Size: 86 12 346 1977 Fragments arranged by size: 1977 1452 460 385 367 346 168 133 86 40 17 12 BtgI C'CryG_G Cuts at: 513 1065 513 Size: 552 4891 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4704 Fragments arranged by size: 4704 683 56 BtsI GCAGTG_nn' Cuts at: 2025 2959 3753 3773 2025 Size: 934 794 20 3695 Fragments arranged by size: 3695 934 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5443 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5408 DraI TTT'AAA Cuts at: 2747 2747 Size: 5443 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4450 809 Size: 507 3134 1802 Fragments arranged by size: 3134 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2890 3779 5408 Size: 54 1425 50 275 18 1060 889 1629 Cuts at: 5408 8 Size: 43 Fragments arranged by size: 1629 1425 1060 889 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2890 1537 Size: 275 1078 4090 Fragments arranged by size: 4090 1078 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2337 2544 3373 1353 Size: 984 207 829 3423 Fragments arranged by size: 3423 984 829 207 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4030 4404 4550 387 Size: 1064 138 2441 374 146 1280 Fragments arranged by size: 2441 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2177 3506 4103 4890 5158 1239 Size: 393 545 1329 597 787 268 1524 Fragments arranged by size: 1524 1329 787 597 545 393 268 EcoRI G'AATT_C Cuts at: 2419 2691 2752 3130 2419 Size: 272 61 378 4732 Fragments arranged by size: 4732 378 272 61 FspI TGC'GCA Cuts at: 3949 3949 Size: 5443 HaeII r_GCGC'y Cuts at: 1678 4590 1678 Size: 2912 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2125 2157 2440 2472 2660 Size: 32 135 32 553 32 283 32 188 Cuts at: 2660 2692 4084 4116 4158 4190 1373 Size: 32 1392 32 42 32 2626 Fragments arranged by size: 2626 1392 553 283 188 135 42 32 32 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2183 2299 2787 3033 669 Size: 988 281 245 116 488 246 3079 Fragments arranged by size: 3079 988 488 281 246 245 116 HindIII A'AGCT_T Cuts at: 748 748 Size: 5443 HpaI GTT'AAC Cuts at: 2299 3033 2299 Size: 734 4709 KpnI G_GTAC'C Cuts at: 2768 2768 Size: 5443 MfeI C'AATT_G Cuts at: 3042 3042 Size: 5443 MluI A'CGCG_T Cuts at: 5319 5319 Size: 5443 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2551 4557 4741 1305 Size: 1246 2006 184 2007 Fragments arranged by size: 2007 2006 1246 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3621 Fragments arranged by size: 3621 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2439 3401 3760 3919 518 Size: 648 1273 962 359 159 2042 Fragments arranged by size: 2042 1273 962 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2272 2681 2859 3536 4684 4929 1606 Size: 666 409 178 677 1148 245 2120 Fragments arranged by size: 2120 1148 677 666 409 245 178 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 4891 NdeI CA'TA_TG Cuts at: 387 387 Size: 5443 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5443 NotI GC'GGCC_GC Cuts at: 2890 2890 Size: 5443 NspI r_CATG'y Cuts at: 1132 1229 2801 4346 1132 Size: 97 1572 1545 2229 Fragments arranged by size: 2229 1572 1545 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5443 PciI A'CATG_T Cuts at: 4342 4342 Size: 5443 PflMI CCAn_nnn'nTGG Cuts at: 1108 2010 1108 Size: 902 4541 PmeI GTTT'AAAC Cuts at: 2747 2747 Size: 5443 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2286 2318 3512 3544 5025 5057 2286 Size: 32 1194 32 1481 32 2672 Fragments arranged by size: 2672 1481 1194 32 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5443 PsiI TTA'TAA Cuts at: 3013 3013 Size: 5443 PstI C_TGCA'G Cuts at: 830 2795 830 Size: 1965 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5443 PvuII CAG'CTG Cuts at: 2272 2681 2272 Size: 409 5034 SalI G'TCGA_C Cuts at: 1936 2181 2785 1936 Size: 245 604 4594 Fragments arranged by size: 4594 604 245 SbfI CC_TGCA'GG Cuts at: 2795 2795 Size: 5443 ScaI AGT'ACT Cuts at: 3691 5403 3691 Size: 1712 3731 SfcI C'TryA_G Cuts at: 826 1045 2791 3926 4607 4798 826 Size: 219 1746 1135 681 191 1471 Fragments arranged by size: 1746 1471 1135 681 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5443 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5443 SmaI CCC'GGG Cuts at: 1872 2074 2770 1872 Size: 202 696 4545 Fragments arranged by size: 4545 696 202 SmlI C'TyrA_G Cuts at: 820 1017 1943 2414 3547 4448 4710 820 Size: 197 926 471 1133 901 262 1553 Fragments arranged by size: 1553 1133 926 901 471 262 197 SnaBI TAC'GTA Cuts at: 493 3234 493 Size: 2741 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5443 SphI G_CATG'C Cuts at: 1132 2801 1132 Size: 1669 3774 SrfI GCCC'GGGC Cuts at: 2074 2074 Size: 5443 SspI AAT'ATT Cuts at: 5 52 3367 5 Size: 47 3315 2081 Fragments arranged by size: 3315 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5443 StyI C'CwwG_G Cuts at: 513 1065 2882 513 Size: 552 1817 3074 Fragments arranged by size: 3074 1817 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3470 3487 3640 3825 4270 325 Size: 1255 1890 17 153 185 445 1498 Fragments arranged by size: 1890 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3689 5401 96 Size: 274 80 33 51 1443 1712 1712 138 Fragments arranged by size: 1712 1712 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5403 5435 5403 Size: 32 5411 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5443 XbaI T'CTAG_A Cuts at: 2779 2779 Size: 5443 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5443 XmaI C'CCGG_G Cuts at: 1870 2072 2768 1870 Size: 202 696 4545 Fragments arranged by size: 4545 696 202 XmnI GAAnn'nnTTC Cuts at: 3572 3572 Size: 5443 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 2162 3251 276 Size: 53 83 186 936 628 1089 2468 Fragments arranged by size: 2468 1089 936 628 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PstI PvuI PvuII SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SrfI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI Bpu10I BsiWI BstZ17I Bsu36I DraIII EcoICRI EcoNI EcoO109I EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PpuMI PspOMI PspXI PsrI RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SwaI XcmI