FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6651, 246 aa 1>>>pF1KE6651 246 - 246 aa - 246 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.2672+/-0.000291; mu= 2.5527+/- 0.018 mean_var=165.4937+/-33.270, 0's: 0 Z-trim(123.0): 14 B-trim: 473 in 1/58 Lambda= 0.099697 statistics sampled from 42054 (42068) to 42054 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.821), E-opt: 0.2 (0.493), width: 16 Scan time: 6.510 The best scores are: opt bits E(85289) NP_001139511 (OMIM: 231070,607983) RAB6-interactin ( 246) 1643 247.1 2.1e-65 NP_689494 (OMIM: 231070,607983) RAB6-interacting g ( 394) 1643 247.3 3.1e-65 XP_011508451 (OMIM: 231070,607983) PREDICTED: RAB6 ( 377) 1312 199.6 6.3e-51 XP_016858296 (OMIM: 231070,607983) PREDICTED: RAB6 ( 214) 400 68.3 1.2e-11 XP_011508452 (OMIM: 231070,607983) PREDICTED: RAB6 ( 214) 400 68.3 1.2e-11 NP_001307181 (OMIM: 231070,607983) RAB6-interactin ( 214) 400 68.3 1.2e-11 XP_011508453 (OMIM: 231070,607983) PREDICTED: RAB6 ( 214) 400 68.3 1.2e-11 XP_006711691 (OMIM: 231070,607983) PREDICTED: RAB6 ( 214) 400 68.3 1.2e-11 >>NP_001139511 (OMIM: 231070,607983) RAB6-interacting go (246 aa) initn: 1643 init1: 1643 opt: 1643 Z-score: 1295.3 bits: 247.1 E(85289): 2.1e-65 Smith-Waterman score: 1643; 100.0% identity (100.0% similar) in 246 aa overlap (1-246:1-246) 10 20 30 40 50 60 pF1KE6 MSWAAVLAVAAARFGHFWGCRWPGPMAQGWAGFSEEELRRLKQTKDPFEPQRRLPAKKSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSWAAVLAVAAARFGHFWGCRWPGPMAQGWAGFSEEELRRLKQTKDPFEPQRRLPAKKSR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 QQLQREKALVEQSQKLGLQDGSTSLLPEQLLSAPKQRVNVQKPPFSSPTLPSHFTLTSPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QQLQREKALVEQSQKLGLQDGSTSLLPEQLLSAPKQRVNVQKPPFSSPTLPSHFTLTSPV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 GDGQPQGIESQPKELGLENSHDGHNNVEILPPKPDCKLEKKKVELQEKSRWEVLQQEQRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GDGQPQGIESQPKELGLENSHDGHNNVEILPPKPDCKLEKKKVELQEKSRWEVLQQEQRL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 MEEKNKRKKALLAKAIAERSKRTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQASL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MEEKNKRKKALLAKAIAERSKRTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQASL 190 200 210 220 230 240 pF1KE6 DYSYAR :::::: NP_001 DYSYAR >>NP_689494 (OMIM: 231070,607983) RAB6-interacting golgi (394 aa) initn: 1643 init1: 1643 opt: 1643 Z-score: 1292.3 bits: 247.3 E(85289): 3.1e-65 Smith-Waterman score: 1643; 100.0% identity (100.0% similar) in 246 aa overlap (1-246:1-246) 10 20 30 40 50 60 pF1KE6 MSWAAVLAVAAARFGHFWGCRWPGPMAQGWAGFSEEELRRLKQTKDPFEPQRRLPAKKSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_689 MSWAAVLAVAAARFGHFWGCRWPGPMAQGWAGFSEEELRRLKQTKDPFEPQRRLPAKKSR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 QQLQREKALVEQSQKLGLQDGSTSLLPEQLLSAPKQRVNVQKPPFSSPTLPSHFTLTSPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_689 QQLQREKALVEQSQKLGLQDGSTSLLPEQLLSAPKQRVNVQKPPFSSPTLPSHFTLTSPV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 GDGQPQGIESQPKELGLENSHDGHNNVEILPPKPDCKLEKKKVELQEKSRWEVLQQEQRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_689 GDGQPQGIESQPKELGLENSHDGHNNVEILPPKPDCKLEKKKVELQEKSRWEVLQQEQRL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 MEEKNKRKKALLAKAIAERSKRTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQASL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_689 MEEKNKRKKALLAKAIAERSKRTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQASL 190 200 210 220 230 240 pF1KE6 DYSYAR :::::: NP_689 DYSYARKRFDRAEAEYIAAKLDIQRKTEIKEQLTEHLCTIIQQNELRKAKKLEELMQQLD 250 260 270 280 290 300 >>XP_011508451 (OMIM: 231070,607983) PREDICTED: RAB6-int (377 aa) initn: 1312 init1: 1312 opt: 1312 Z-score: 1035.3 bits: 199.6 E(85289): 6.3e-51 Smith-Waterman score: 1484; 93.1% identity (93.1% similar) in 246 aa overlap (1-246:1-229) 10 20 30 40 50 60 pF1KE6 MSWAAVLAVAAARFGHFWGCRWPGPMAQGWAGFSEEELRRLKQTKDPFEPQRRLPAKKSR :::::::::::::::::::::::::::: ::::::::::::::: XP_011 MSWAAVLAVAAARFGHFWGCRWPGPMAQ-----------------DPFEPQRRLPAKKSR 10 20 30 40 70 80 90 100 110 120 pF1KE6 QQLQREKALVEQSQKLGLQDGSTSLLPEQLLSAPKQRVNVQKPPFSSPTLPSHFTLTSPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 QQLQREKALVEQSQKLGLQDGSTSLLPEQLLSAPKQRVNVQKPPFSSPTLPSHFTLTSPV 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE6 GDGQPQGIESQPKELGLENSHDGHNNVEILPPKPDCKLEKKKVELQEKSRWEVLQQEQRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GDGQPQGIESQPKELGLENSHDGHNNVEILPPKPDCKLEKKKVELQEKSRWEVLQQEQRL 110 120 130 140 150 160 190 200 210 220 230 240 pF1KE6 MEEKNKRKKALLAKAIAERSKRTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQASL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MEEKNKRKKALLAKAIAERSKRTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQASL 170 180 190 200 210 220 pF1KE6 DYSYAR :::::: XP_011 DYSYARKRFDRAEAEYIAAKLDIQRKTEIKEQLTEHLCTIIQQNELRKAKKLEELMQQLD 230 240 250 260 270 280 >>XP_016858296 (OMIM: 231070,607983) PREDICTED: RAB6-int (214 aa) initn: 400 init1: 400 opt: 400 Z-score: 330.0 bits: 68.3 E(85289): 1.2e-11 Smith-Waterman score: 400; 100.0% identity (100.0% similar) in 66 aa overlap (181-246:1-66) 160 170 180 190 200 210 pF1KE6 PPKPDCKLEKKKVELQEKSRWEVLQQEQRLMEEKNKRKKALLAKAIAERSKRTQAETMKL :::::::::::::::::::::::::::::: XP_016 MEEKNKRKKALLAKAIAERSKRTQAETMKL 10 20 30 220 230 240 pF1KE6 KRIQKELQALDDMVSADIGILRNRIDQASLDYSYAR :::::::::::::::::::::::::::::::::::: XP_016 KRIQKELQALDDMVSADIGILRNRIDQASLDYSYARKRFDRAEAEYIAAKLDIQRKTEIK 40 50 60 70 80 90 XP_016 EQLTEHLCTIIQQNELRKAKKLEELMQQLDVEADEETLELEVEVERLLHEQEVESRRPVV 100 110 120 130 140 150 >>XP_011508452 (OMIM: 231070,607983) PREDICTED: RAB6-int (214 aa) initn: 400 init1: 400 opt: 400 Z-score: 330.0 bits: 68.3 E(85289): 1.2e-11 Smith-Waterman score: 400; 100.0% identity (100.0% similar) in 66 aa overlap (181-246:1-66) 160 170 180 190 200 210 pF1KE6 PPKPDCKLEKKKVELQEKSRWEVLQQEQRLMEEKNKRKKALLAKAIAERSKRTQAETMKL :::::::::::::::::::::::::::::: XP_011 MEEKNKRKKALLAKAIAERSKRTQAETMKL 10 20 30 220 230 240 pF1KE6 KRIQKELQALDDMVSADIGILRNRIDQASLDYSYAR :::::::::::::::::::::::::::::::::::: XP_011 KRIQKELQALDDMVSADIGILRNRIDQASLDYSYARKRFDRAEAEYIAAKLDIQRKTEIK 40 50 60 70 80 90 XP_011 EQLTEHLCTIIQQNELRKAKKLEELMQQLDVEADEETLELEVEVERLLHEQEVESRRPVV 100 110 120 130 140 150 >>NP_001307181 (OMIM: 231070,607983) RAB6-interacting go (214 aa) initn: 400 init1: 400 opt: 400 Z-score: 330.0 bits: 68.3 E(85289): 1.2e-11 Smith-Waterman score: 400; 100.0% identity (100.0% similar) in 66 aa overlap (181-246:1-66) 160 170 180 190 200 210 pF1KE6 PPKPDCKLEKKKVELQEKSRWEVLQQEQRLMEEKNKRKKALLAKAIAERSKRTQAETMKL :::::::::::::::::::::::::::::: NP_001 MEEKNKRKKALLAKAIAERSKRTQAETMKL 10 20 30 220 230 240 pF1KE6 KRIQKELQALDDMVSADIGILRNRIDQASLDYSYAR :::::::::::::::::::::::::::::::::::: NP_001 KRIQKELQALDDMVSADIGILRNRIDQASLDYSYARKRFDRAEAEYIAAKLDIQRKTEIK 40 50 60 70 80 90 NP_001 EQLTEHLCTIIQQNELRKAKKLEELMQQLDVEADEETLELEVEVERLLHEQEVESRRPVV 100 110 120 130 140 150 >>XP_011508453 (OMIM: 231070,607983) PREDICTED: RAB6-int (214 aa) initn: 400 init1: 400 opt: 400 Z-score: 330.0 bits: 68.3 E(85289): 1.2e-11 Smith-Waterman score: 400; 100.0% identity (100.0% similar) in 66 aa overlap (181-246:1-66) 160 170 180 190 200 210 pF1KE6 PPKPDCKLEKKKVELQEKSRWEVLQQEQRLMEEKNKRKKALLAKAIAERSKRTQAETMKL :::::::::::::::::::::::::::::: XP_011 MEEKNKRKKALLAKAIAERSKRTQAETMKL 10 20 30 220 230 240 pF1KE6 KRIQKELQALDDMVSADIGILRNRIDQASLDYSYAR :::::::::::::::::::::::::::::::::::: XP_011 KRIQKELQALDDMVSADIGILRNRIDQASLDYSYARKRFDRAEAEYIAAKLDIQRKTEIK 40 50 60 70 80 90 XP_011 EQLTEHLCTIIQQNELRKAKKLEELMQQLDVEADEETLELEVEVERLLHEQEVESRRPVV 100 110 120 130 140 150 >>XP_006711691 (OMIM: 231070,607983) PREDICTED: RAB6-int (214 aa) initn: 400 init1: 400 opt: 400 Z-score: 330.0 bits: 68.3 E(85289): 1.2e-11 Smith-Waterman score: 400; 100.0% identity (100.0% similar) in 66 aa overlap (181-246:1-66) 160 170 180 190 200 210 pF1KE6 PPKPDCKLEKKKVELQEKSRWEVLQQEQRLMEEKNKRKKALLAKAIAERSKRTQAETMKL :::::::::::::::::::::::::::::: XP_006 MEEKNKRKKALLAKAIAERSKRTQAETMKL 10 20 30 220 230 240 pF1KE6 KRIQKELQALDDMVSADIGILRNRIDQASLDYSYAR :::::::::::::::::::::::::::::::::::: XP_006 KRIQKELQALDDMVSADIGILRNRIDQASLDYSYARKRFDRAEAEYIAAKLDIQRKTEIK 40 50 60 70 80 90 XP_006 EQLTEHLCTIIQQNELRKAKKLEELMQQLDVEADEETLELEVEVERLLHEQEVESRRPVV 100 110 120 130 140 150 246 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 15:08:05 2016 done: Tue Nov 8 15:08:06 2016 Total Scan time: 6.510 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]