FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6651, 246 aa
  1>>>pF1KE6651 246 - 246 aa - 246 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8889+/-0.000739; mu= 4.6097+/- 0.045
 mean_var=153.2995+/-30.761, 0's: 0 Z-trim(115.2): 12  B-trim: 209 in 1/51
 Lambda= 0.103587
 statistics sampled from 15711 (15723) to 15711 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.816), E-opt: 0.2 (0.483), width:  16
 Scan time:  2.650

The best scores are:                                      opt bits E(32554)
CCDS53428.1 GORAB gene_id:92344|Hs108|chr1         ( 246) 1643 256.1 1.6e-68
CCDS1289.1 GORAB gene_id:92344|Hs108|chr1          ( 394) 1643 256.2 2.3e-68


>>CCDS53428.1 GORAB gene_id:92344|Hs108|chr1              (246 aa)
 initn: 1643 init1: 1643 opt: 1643  Z-score: 1343.9  bits: 256.1 E(32554): 1.6e-68
Smith-Waterman score: 1643; 100.0% identity (100.0% similar) in 246 aa overlap (1-246:1-246)

               10        20        30        40        50        60
pF1KE6 MSWAAVLAVAAARFGHFWGCRWPGPMAQGWAGFSEEELRRLKQTKDPFEPQRRLPAKKSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MSWAAVLAVAAARFGHFWGCRWPGPMAQGWAGFSEEELRRLKQTKDPFEPQRRLPAKKSR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 QQLQREKALVEQSQKLGLQDGSTSLLPEQLLSAPKQRVNVQKPPFSSPTLPSHFTLTSPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 QQLQREKALVEQSQKLGLQDGSTSLLPEQLLSAPKQRVNVQKPPFSSPTLPSHFTLTSPV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 GDGQPQGIESQPKELGLENSHDGHNNVEILPPKPDCKLEKKKVELQEKSRWEVLQQEQRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GDGQPQGIESQPKELGLENSHDGHNNVEILPPKPDCKLEKKKVELQEKSRWEVLQQEQRL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 MEEKNKRKKALLAKAIAERSKRTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQASL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MEEKNKRKKALLAKAIAERSKRTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQASL
              190       200       210       220       230       240

             
pF1KE6 DYSYAR
       ::::::
CCDS53 DYSYAR
             

>>CCDS1289.1 GORAB gene_id:92344|Hs108|chr1               (394 aa)
 initn: 1643 init1: 1643 opt: 1643  Z-score: 1340.9  bits: 256.2 E(32554): 2.3e-68
Smith-Waterman score: 1643; 100.0% identity (100.0% similar) in 246 aa overlap (1-246:1-246)

               10        20        30        40        50        60
pF1KE6 MSWAAVLAVAAARFGHFWGCRWPGPMAQGWAGFSEEELRRLKQTKDPFEPQRRLPAKKSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MSWAAVLAVAAARFGHFWGCRWPGPMAQGWAGFSEEELRRLKQTKDPFEPQRRLPAKKSR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 QQLQREKALVEQSQKLGLQDGSTSLLPEQLLSAPKQRVNVQKPPFSSPTLPSHFTLTSPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QQLQREKALVEQSQKLGLQDGSTSLLPEQLLSAPKQRVNVQKPPFSSPTLPSHFTLTSPV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 GDGQPQGIESQPKELGLENSHDGHNNVEILPPKPDCKLEKKKVELQEKSRWEVLQQEQRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GDGQPQGIESQPKELGLENSHDGHNNVEILPPKPDCKLEKKKVELQEKSRWEVLQQEQRL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 MEEKNKRKKALLAKAIAERSKRTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQASL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MEEKNKRKKALLAKAIAERSKRTQAETMKLKRIQKELQALDDMVSADIGILRNRIDQASL
              190       200       210       220       230       240

                                                                   
pF1KE6 DYSYAR                                                      
       ::::::                                                      
CCDS12 DYSYARKRFDRAEAEYIAAKLDIQRKTEIKEQLTEHLCTIIQQNELRKAKKLEELMQQLD
              250       260       270       280       290       300




246 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 15:08:04 2016 done: Tue Nov  8 15:08:05 2016
 Total Scan time:  2.650 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]