FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5274, 218 aa
  1>>>pF1KE5274 218 - 218 aa - 218 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3728+/-0.000954; mu= 12.8023+/- 0.056
 mean_var=61.4719+/-12.695, 0's: 0 Z-trim(104.4): 65  B-trim: 34 in 1/45
 Lambda= 0.163582
 statistics sampled from 7839 (7903) to 7839 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.622), E-opt: 0.2 (0.243), width:  16
 Scan time:  1.750

The best scores are:                                      opt bits E(32554)
CCDS9498.1 NALCN gene_id:259232|Hs108|chr13        (1738) 1469 355.6 1.1e-97


>>CCDS9498.1 NALCN gene_id:259232|Hs108|chr13             (1738 aa)
 initn: 1469 init1: 1469 opt: 1469  Z-score: 1867.2  bits: 355.6 E(32554): 1.1e-97
Smith-Waterman score: 1469; 100.0% identity (100.0% similar) in 215 aa overlap (1-215:1-215)

               10        20        30        40        50        60
pF1KE5 MLKRKQSSRVEAQPVTDFGPDESLSDNADILWINKPWVHSLLRICAIISVISVCMNTPMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 MLKRKQSSRVEAQPVTDFGPDESLSDNADILWINKPWVHSLLRICAIISVISVCMNTPMT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 FEHYPPLQYVTFTLDTLLMFLYTAEMIAKMHIRGIVKGDSSYVKDRWCVFDGFMVFCLWV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 FEHYPPLQYVTFTLDTLLMFLYTAEMIAKMHIRGIVKGDSSYVKDRWCVFDGFMVFCLWV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 SLVLQVFEIADIVDQMSPWGMLRIPRPLIMIRAFRIYFRFELPRTRITNILKRSGEQIWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 SLVLQVFEIADIVDQMSPWGMLRIPRPLIMIRAFRIYFRFELPRTRITNILKRSGEQIWS
              130       140       150       160       170       180

              190       200       210                              
pF1KE5 VSIFLLFFLLLYGILGVQMFGTFTYHCVVNDTKPGLSL                      
       :::::::::::::::::::::::::::::::::::                         
CCDS94 VSIFLLFFLLLYGILGVQMFGTFTYHCVVNDTKPGNVTWNSLAIPDTHCSPELEEGYQCP
              190       200       210       220       230       240

CCDS94 PGFKCMDLEDLGLSRQELGYSGFNEIGTSIFTVYEAASQEGWVFLMYRAIDSFPRWRSYF
              250       260       270       280       290       300




218 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:20:22 2016 done: Mon Nov  7 23:20:22 2016
 Total Scan time:  1.750 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]