FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5166, 157 aa 1>>>pF1KE5166 157 - 157 aa - 157 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6301+/-0.000746; mu= 11.8701+/- 0.045 mean_var=87.8958+/-17.278, 0's: 0 Z-trim(109.7): 19 B-trim: 5 in 1/53 Lambda= 0.136801 statistics sampled from 11095 (11107) to 11095 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.341), width: 16 Scan time: 1.600 The best scores are: opt bits E(32554) CCDS63154.1 COPS7B gene_id:64708|Hs108|chr2 ( 157) 1028 211.9 1.3e-55 CCDS63152.1 COPS7B gene_id:64708|Hs108|chr2 ( 230) 1028 212.0 1.8e-55 CCDS2488.1 COPS7B gene_id:64708|Hs108|chr2 ( 264) 1028 212.1 1.9e-55 CCDS74668.1 COPS7B gene_id:64708|Hs108|chr2 ( 209) 1016 209.6 8.4e-55 CCDS77539.1 COPS7B gene_id:64708|Hs108|chr2 ( 278) 705 148.3 3.1e-36 CCDS63153.1 COPS7B gene_id:64708|Hs108|chr2 ( 273) 698 147.0 8.1e-36 CCDS8558.1 COPS7A gene_id:50813|Hs108|chr12 ( 275) 605 128.6 2.7e-30 >>CCDS63154.1 COPS7B gene_id:64708|Hs108|chr2 (157 aa) initn: 1028 init1: 1028 opt: 1028 Z-score: 1111.9 bits: 211.9 E(32554): 1.3e-55 Smith-Waterman score: 1028; 100.0% identity (100.0% similar) in 157 aa overlap (1-157:1-157) 10 20 30 40 50 60 pF1KE5 MKCIPYSVLLKDLEMRNLRELEDLIIEAVYTDIIQGKLDQRNQLLEVDFCIGRDIRKKDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS63 MKCIPYSVLLKDLEMRNLRELEDLIIEAVYTDIIQGKLDQRNQLLEVDFCIGRDIRKKDI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 NNIVKTLHEWCDGCEAVLLGIEQQVLRANQYKENHNRTQQQVEAEVTNIKKTLKATASSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS63 NNIVKTLHEWCDGCEAVLLGIEQQVLRANQYKENHNRTQQQVEAEVTNIKKTLKATASSS 70 80 90 100 110 120 130 140 150 pF1KE5 AQEMEQQLAERECPPHAEQRQPTKKMSKVKGLVSSRH ::::::::::::::::::::::::::::::::::::: CCDS63 AQEMEQQLAERECPPHAEQRQPTKKMSKVKGLVSSRH 130 140 150 >>CCDS63152.1 COPS7B gene_id:64708|Hs108|chr2 (230 aa) initn: 1028 init1: 1028 opt: 1028 Z-score: 1109.6 bits: 212.0 E(32554): 1.8e-55 Smith-Waterman score: 1028; 100.0% identity (100.0% similar) in 157 aa overlap (1-157:74-230) 10 20 30 pF1KE5 MKCIPYSVLLKDLEMRNLRELEDLIIEAVY :::::::::::::::::::::::::::::: CCDS63 YIANKESLPELSTAQQNKLKHLTIVSLASRMKCIPYSVLLKDLEMRNLRELEDLIIEAVY 50 60 70 80 90 100 40 50 60 70 80 90 pF1KE5 TDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLLGIEQQVLRANQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS63 TDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLLGIEQQVLRANQ 110 120 130 140 150 160 100 110 120 130 140 150 pF1KE5 YKENHNRTQQQVEAEVTNIKKTLKATASSSAQEMEQQLAERECPPHAEQRQPTKKMSKVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS63 YKENHNRTQQQVEAEVTNIKKTLKATASSSAQEMEQQLAERECPPHAEQRQPTKKMSKVK 170 180 190 200 210 220 pF1KE5 GLVSSRH ::::::: CCDS63 GLVSSRH 230 >>CCDS2488.1 COPS7B gene_id:64708|Hs108|chr2 (264 aa) initn: 1028 init1: 1028 opt: 1028 Z-score: 1108.7 bits: 212.1 E(32554): 1.9e-55 Smith-Waterman score: 1028; 100.0% identity (100.0% similar) in 157 aa overlap (1-157:108-264) 10 20 30 pF1KE5 MKCIPYSVLLKDLEMRNLRELEDLIIEAVY :::::::::::::::::::::::::::::: CCDS24 YIANKESLPELSTAQQNKLKHLTIVSLASRMKCIPYSVLLKDLEMRNLRELEDLIIEAVY 80 90 100 110 120 130 40 50 60 70 80 90 pF1KE5 TDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLLGIEQQVLRANQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS24 TDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLLGIEQQVLRANQ 140 150 160 170 180 190 100 110 120 130 140 150 pF1KE5 YKENHNRTQQQVEAEVTNIKKTLKATASSSAQEMEQQLAERECPPHAEQRQPTKKMSKVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS24 YKENHNRTQQQVEAEVTNIKKTLKATASSSAQEMEQQLAERECPPHAEQRQPTKKMSKVK 200 210 220 230 240 250 pF1KE5 GLVSSRH ::::::: CCDS24 GLVSSRH 260 >>CCDS74668.1 COPS7B gene_id:64708|Hs108|chr2 (209 aa) initn: 1016 init1: 1016 opt: 1016 Z-score: 1097.3 bits: 209.6 E(32554): 8.4e-55 Smith-Waterman score: 1016; 99.4% identity (100.0% similar) in 156 aa overlap (2-157:54-209) 10 20 30 pF1KE5 MKCIPYSVLLKDLEMRNLRELEDLIIEAVYT .::::::::::::::::::::::::::::: CCDS74 GSALTALISQVLEAPGVYVFGELLELANVQECIPYSVLLKDLEMRNLRELEDLIIEAVYT 30 40 50 60 70 80 40 50 60 70 80 90 pF1KE5 DIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLLGIEQQVLRANQY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 DIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLLGIEQQVLRANQY 90 100 110 120 130 140 100 110 120 130 140 150 pF1KE5 KENHNRTQQQVEAEVTNIKKTLKATASSSAQEMEQQLAERECPPHAEQRQPTKKMSKVKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 KENHNRTQQQVEAEVTNIKKTLKATASSSAQEMEQQLAERECPPHAEQRQPTKKMSKVKG 150 160 170 180 190 200 pF1KE5 LVSSRH :::::: CCDS74 LVSSRH >>CCDS77539.1 COPS7B gene_id:64708|Hs108|chr2 (278 aa) initn: 736 init1: 705 opt: 705 Z-score: 763.9 bits: 148.3 E(32554): 3.1e-36 Smith-Waterman score: 705; 94.6% identity (99.1% similar) in 111 aa overlap (1-111:108-218) 10 20 30 pF1KE5 MKCIPYSVLLKDLEMRNLRELEDLIIEAVY :::::::::::::::::::::::::::::: CCDS77 YIANKESLPELSTAQQNKLKHLTIVSLASRMKCIPYSVLLKDLEMRNLRELEDLIIEAVY 80 90 100 110 120 130 40 50 60 70 80 90 pF1KE5 TDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLLGIEQQVLRANQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 TDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLLGIEQQVLRANQ 140 150 160 170 180 190 100 110 120 130 140 150 pF1KE5 YKENHNRTQQQVEAEVTNIKKTLKATASSSAQEMEQQLAERECPPHAEQRQPTKKMSKVK :::::::::::::::.. ... CCDS77 YKENHNRTQQQVEAEIACFQREKRDVPLLNLITTAFFWLPTSRRHSKPPHPPRLRRWSSS 200 210 220 230 240 250 >>CCDS63153.1 COPS7B gene_id:64708|Hs108|chr2 (273 aa) initn: 714 init1: 698 opt: 698 Z-score: 756.5 bits: 147.0 E(32554): 8.1e-36 Smith-Waterman score: 698; 100.0% identity (100.0% similar) in 105 aa overlap (1-105:108-212) 10 20 30 pF1KE5 MKCIPYSVLLKDLEMRNLRELEDLIIEAVY :::::::::::::::::::::::::::::: CCDS63 YIANKESLPELSTAQQNKLKHLTIVSLASRMKCIPYSVLLKDLEMRNLRELEDLIIEAVY 80 90 100 110 120 130 40 50 60 70 80 90 pF1KE5 TDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLLGIEQQVLRANQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS63 TDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLLGIEQQVLRANQ 140 150 160 170 180 190 100 110 120 130 140 150 pF1KE5 YKENHNRTQQQVEAEVTNIKKTLKATASSSAQEMEQQLAERECPPHAEQRQPTKKMSKVK ::::::::::::::: CCDS63 YKENHNRTQQQVEAEREKRDVPLLNLITTAFFWLPTSRRHSKPPHPPRLRRWSSSWLNGS 200 210 220 230 240 250 >>CCDS8558.1 COPS7A gene_id:50813|Hs108|chr12 (275 aa) initn: 627 init1: 516 opt: 605 Z-score: 657.3 bits: 128.6 E(32554): 2.7e-30 Smith-Waterman score: 605; 58.1% identity (85.6% similar) in 160 aa overlap (1-155:108-267) 10 20 30 pF1KE5 MKCIPYSVLLKDLEMRNLRELEDLIIEAVY .:::::.:::. : .::.:.::::.::::: CCDS85 YLAEARNLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNVRQLEDLVIEAVY 80 90 100 110 120 130 40 50 60 70 80 90 pF1KE5 TDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDGCEAVLLGIEQQVLRANQ .:...:.:::::: ::::. :::::...:.. :..::.::: :::.:: :::.:: :::: CCDS85 ADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEWCVGCEVVLSGIEEQVSRANQ 140 150 160 170 180 190 100 110 120 130 140 pF1KE5 YKENHNRTQQQVEAEVTNIKKTLKAT----ASSSAQEMEQQLAE-RECPPHAEQRQPTKK .::.. .::.:.::.:.:::.:.: :....:. ::.:.: :: : ..::::.:: CCDS85 HKEQQLGLKQQIESEVANLKKTIKVTTAAAAAATSQDPEQHLTELREPAPGTNQRQPSKK 200 210 220 230 240 250 150 pF1KE5 MSKVKGLVSSRH :: ::: .: CCDS85 ASKGKGLRGSAKIWSKSN 260 270 157 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:13:11 2016 done: Mon Nov 7 22:13:11 2016 Total Scan time: 1.600 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]