Result of FASTA (ccds) for
pFN21AE3880
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3880, 379 aa
1>>>pF1KE3880 379 - 379 aa - 379 aa
Library: human.CCDS.faa
18921897 residues in 33420 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.6642+/-0.000791; mu= 2.7794+/- 0.048
mean_var=188.7254+/-38.503, 0's: 0 Z-trim(114.8): 11 B-trim: 163 in 2/48
Lambda= 0.093360
statistics sampled from 15524 (15533) to 15524 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.789), E-opt: 0.2 (0.465), width: 16
Scan time: 1.540
The best scores are: opt bits E(33420)
CCDS45268.1 MINDY2 gene_id:54629|Hs109|chr15 ( 620) 2258 316.0 5.8e-86
CCDS42046.1 MINDY2 gene_id:54629|Hs109|chr15 ( 621) 2258 316.0 5.8e-86
CCDS976.1 MINDY1 gene_id:55793|Hs109|chr1 ( 469) 461 73.9 3.3e-13
CCDS53361.1 MINDY1 gene_id:55793|Hs109|chr1 ( 517) 461 73.9 3.6e-13
CCDS55635.1 MINDY1 gene_id:55793|Hs109|chr1 ( 374) 448 72.1 9.3e-13
>>CCDS45268.1 MINDY2 gene_id:54629|Hs109|chr15 (620 aa)
initn: 2283 init1: 2258 opt: 2258 Z-score: 1657.0 bits: 316.0 E(33420): 5.8e-86
Smith-Waterman score: 2401; 91.7% identity (91.7% similar) in 409 aa overlap (1-375:1-409)
10 20 30 40 50 60
pF1KE3 MESSPESLQPLEHGVAAGPASGTGSSQEGLQETRLAAGDGPGVWAAETSGGNGLGAAAAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MESSPESLQPLEHGVAAGPASGTGSSQEGLQETRLAAGDGPGVWAAETSGGNGLGAAAAR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 RSLPDSASPAGSPEVPGPCSSSAGLDLKDSGLESPAAAEAPLRGQYKVTASPETAVAGVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RSLPDSASPAGSPEVPGPCSSSAGLDLKDSGLESPAAAEAPLRGQYKVTASPETAVAGVG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 HELGTAGDAGARPDLAGTCQAELTAAGSEEPSSAGGLSSSCSDPSPPGESPSLDSLESFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 HELGTAGDAGARPDLAGTCQAELTAAGSEEPSSAGGLSSSCSDPSPPGESPSLDSLESFS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 NLHSFPSSCEFNSEEGAENRVPEEEEGAAVLPGAVPLCKEEEGEETAQVLAASKERFPGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 NLHSFPSSCEFNSEEGAENRVPEEEEGAAVLPGAVPLCKEEEGEETAQVLAASKERFPGQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 SVYHIKWIQWKEENTPIITQNENGPCPLLAILNVLLLAWKVKLPPMMEIITAEQLMEYLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SVYHIKWIQWKEENTPIITQNENGPCPLLAILNVLLLAWKVKLPPMMEIITAEQLMEYLG
250 260 270 280 290 300
310 320 330 340
pF1KE3 DYMLDAKPKEISEIQRLNYEQNMSDAMAILHKLQTGLDVN--------------------
::::::::::::::::::::::::::::::::::::::::
CCDS45 DYMLDAKPKEISEIQRLNYEQNMSDAMAILHKLQTGLDVNVRFTGVRVFEYTPECIVFDL
310 320 330 340 350 360
350 360 370
pF1KE3 --------------IDDIVKAVGNCSYNQLVEKIISCKQSDNSELVSEGGLCS
:::::::::::::::::::::::::::::::::::
CCDS45 LDIPLYHGWLVDPQIDDIVKAVGNCSYNQLVEKIISCKQSDNSELVSEGFVAEQFLNNTA
370 380 390 400 410 420
CCDS45 TQLTYHGLCELTSTVQEGELCVFFRNNHFSTMTKYKGQLYLLVTDQGFLTEEKVVWESLH
430 440 450 460 470 480
>>CCDS42046.1 MINDY2 gene_id:54629|Hs109|chr15 (621 aa)
initn: 2283 init1: 2258 opt: 2258 Z-score: 1657.0 bits: 316.0 E(33420): 5.8e-86
Smith-Waterman score: 2401; 91.7% identity (91.7% similar) in 409 aa overlap (1-375:1-409)
10 20 30 40 50 60
pF1KE3 MESSPESLQPLEHGVAAGPASGTGSSQEGLQETRLAAGDGPGVWAAETSGGNGLGAAAAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MESSPESLQPLEHGVAAGPASGTGSSQEGLQETRLAAGDGPGVWAAETSGGNGLGAAAAR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 RSLPDSASPAGSPEVPGPCSSSAGLDLKDSGLESPAAAEAPLRGQYKVTASPETAVAGVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 RSLPDSASPAGSPEVPGPCSSSAGLDLKDSGLESPAAAEAPLRGQYKVTASPETAVAGVG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 HELGTAGDAGARPDLAGTCQAELTAAGSEEPSSAGGLSSSCSDPSPPGESPSLDSLESFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 HELGTAGDAGARPDLAGTCQAELTAAGSEEPSSAGGLSSSCSDPSPPGESPSLDSLESFS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 NLHSFPSSCEFNSEEGAENRVPEEEEGAAVLPGAVPLCKEEEGEETAQVLAASKERFPGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 NLHSFPSSCEFNSEEGAENRVPEEEEGAAVLPGAVPLCKEEEGEETAQVLAASKERFPGQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 SVYHIKWIQWKEENTPIITQNENGPCPLLAILNVLLLAWKVKLPPMMEIITAEQLMEYLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SVYHIKWIQWKEENTPIITQNENGPCPLLAILNVLLLAWKVKLPPMMEIITAEQLMEYLG
250 260 270 280 290 300
310 320 330 340
pF1KE3 DYMLDAKPKEISEIQRLNYEQNMSDAMAILHKLQTGLDVN--------------------
::::::::::::::::::::::::::::::::::::::::
CCDS42 DYMLDAKPKEISEIQRLNYEQNMSDAMAILHKLQTGLDVNVRFTGVRVFEYTPECIVFDL
310 320 330 340 350 360
350 360 370
pF1KE3 --------------IDDIVKAVGNCSYNQLVEKIISCKQSDNSELVSEGGLCS
:::::::::::::::::::::::::::::::::::
CCDS42 LDIPLYHGWLVDPQIDDIVKAVGNCSYNQLVEKIISCKQSDNSELVSEGFVAEQFLNNTA
370 380 390 400 410 420
CCDS42 TQLTYHGLCELTSTVQEGELCVFFRNNHFSTMTKYKGQLYLLVTDQGFLTEEKVVWESLH
430 440 450 460 470 480
>>CCDS976.1 MINDY1 gene_id:55793|Hs109|chr1 (469 aa)
initn: 619 init1: 429 opt: 461 Z-score: 350.7 bits: 73.9 E(33420): 3.3e-13
Smith-Waterman score: 520; 42.1% identity (63.6% similar) in 228 aa overlap (185-375:58-280)
160 170 180 190 200 210
pF1KE3 GGLSSSCSDPSPPGESPSLDSLESFSNLHSFPSSCEFNSEEGAENRVPEEEEGAAVLP--
.::.: .. :. .:: .: :
CCDS97 LAGPDEHPQDTDARDADGEAREREPADQALLPSQCG----DNLESPLPEAS-SAPPGPTL
30 40 50 60 70 80
220 230 240 250 260 270
pF1KE3 GAVPLCKEEEGEETAQVLAAS-KERFPGQSVYHIKWIQWKEENTPIITQNENGPCPLLAI
:..: . .. : : : . : : . : .::: :: :.::::::. :::::::::
CCDS97 GTLPEVETIRACSMPQELPQSPRTRQPEPDFYCVKWIPWKGEQTPIITQSTNGPCPLLAI
90 100 110 120 130 140
280 290 300 310 320 330
pF1KE3 LNVLLLAWKVKLPPMMEIITAEQLMEYLGDYMLDAKPKEISEIQRLNYEQNMSDAMAILH
.:.:.: :::::::. :.::...:: .::. .:. ::.: :: .::..::..:::..:
CCDS97 MNILFLQWKVKLPPQKEVITSDELMAHLGNCLLSIKPQEKSEGLQLNFQQNVDDAMTVLP
150 160 170 180 190 200
340 350
pF1KE3 KLQTGLDVNI----------------------------------DDIVKAVGNCSYNQLV
:: ::::::. . :.:::. ::::::
CCDS97 KLATGLDVNVRFTGVSDFEYTPECSVFDLLGIPLYHGWLVDPQSPEAVRAVGKLSYNQLV
210 220 230 240 250 260
360 370
pF1KE3 EKIISCKQSDNSELVSEGGLCS
:.::.::.:....::.::
CCDS97 ERIITCKHSSDTNLVTEGLIAEQFLETTAAQLTYHGLCELTAAAKEGELSVFFRNNHFST
270 280 290 300 310 320
>>CCDS53361.1 MINDY1 gene_id:55793|Hs109|chr1 (517 aa)
initn: 619 init1: 429 opt: 461 Z-score: 350.1 bits: 73.9 E(33420): 3.6e-13
Smith-Waterman score: 520; 42.1% identity (63.6% similar) in 228 aa overlap (185-375:106-328)
160 170 180 190 200 210
pF1KE3 GGLSSSCSDPSPPGESPSLDSLESFSNLHSFPSSCEFNSEEGAENRVPEEEEGAAVLP--
.::.: .. :. .:: .: :
CCDS53 LAGPDEHPQDTDARDADGEAREREPADQALLPSQCG----DNLESPLPEAS-SAPPGPTL
80 90 100 110 120 130
220 230 240 250 260 270
pF1KE3 GAVPLCKEEEGEETAQVLAAS-KERFPGQSVYHIKWIQWKEENTPIITQNENGPCPLLAI
:..: . .. : : : . : : . : .::: :: :.::::::. :::::::::
CCDS53 GTLPEVETIRACSMPQELPQSPRTRQPEPDFYCVKWIPWKGEQTPIITQSTNGPCPLLAI
140 150 160 170 180 190
280 290 300 310 320 330
pF1KE3 LNVLLLAWKVKLPPMMEIITAEQLMEYLGDYMLDAKPKEISEIQRLNYEQNMSDAMAILH
.:.:.: :::::::. :.::...:: .::. .:. ::.: :: .::..::..:::..:
CCDS53 MNILFLQWKVKLPPQKEVITSDELMAHLGNCLLSIKPQEKSEGLQLNFQQNVDDAMTVLP
200 210 220 230 240 250
340 350
pF1KE3 KLQTGLDVNI----------------------------------DDIVKAVGNCSYNQLV
:: ::::::. . :.:::. ::::::
CCDS53 KLATGLDVNVRFTGVSDFEYTPECSVFDLLGIPLYHGWLVDPQSPEAVRAVGKLSYNQLV
260 270 280 290 300 310
360 370
pF1KE3 EKIISCKQSDNSELVSEGGLCS
:.::.::.:....::.::
CCDS53 ERIITCKHSSDTNLVTEGLIAEQFLETTAAQLTYHGLCELTAAAKEGELSVFFRNNHFST
320 330 340 350 360 370
>>CCDS55635.1 MINDY1 gene_id:55793|Hs109|chr1 (374 aa)
initn: 597 init1: 429 opt: 448 Z-score: 342.7 bits: 72.1 E(33420): 9.3e-13
Smith-Waterman score: 507; 47.2% identity (68.2% similar) in 176 aa overlap (234-375:10-185)
210 220 230 240 250 260
pF1KE3 EEEGAAVLPGAVPLCKEEEGEETAQVLAASKERFPGQSVYHIKWIQWKEENTPIITQNEN
. : : . : .::: :: :.::::::. :
CCDS55 MPQELPQSPRTRQPEPDFYCVKWIPWKGEQTPIITQSTN
10 20 30
270 280 290 300 310 320
pF1KE3 GPCPLLAILNVLLLAWKVKLPPMMEIITAEQLMEYLGDYMLDAKPKEISEIQRLNYEQNM
::::::::.:.:.: :::::::. :.::...:: .::. .:. ::.: :: .::..::.
CCDS55 GPCPLLAIMNILFLQWKVKLPPQKEVITSDELMAHLGNCLLSIKPQEKSEGLQLNFQQNV
40 50 60 70 80 90
330 340
pF1KE3 SDAMAILHKLQTGLDVNI----------------------------------DDIVKAVG
.:::..: :: ::::::. . :.:::
CCDS55 DDAMTVLPKLATGLDVNVRFTGVSDFEYTPECSVFDLLGIPLYHGWLVDPQSPEAVRAVG
100 110 120 130 140 150
350 360 370
pF1KE3 NCSYNQLVEKIISCKQSDNSELVSEGGLCS
. :::::::.::.::.:....::.::
CCDS55 KLSYNQLVERIITCKHSSDTNLVTEGLIAEQFLETTAAQLTYHGLCELTAAAKEGELSVF
160 170 180 190 200 210
379 residues in 1 query sequences
18921897 residues in 33420 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Aug 4 20:37:17 2021 done: Wed Aug 4 20:37:17 2021
Total Scan time: 1.540 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]