Result of FASTA (omim) for
pFN21AE6176
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6176, 110 aa
1>>>pF1KE6176 110 - 110 aa - 110 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7239+/-0.000281; mu= 12.6509+/- 0.018
mean_var=52.7942+/-10.378, 0's: 0 Z-trim(117.7): 27 B-trim: 0 in 0/54
Lambda= 0.176515
statistics sampled from 30006 (30033) to 30006 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.755), E-opt: 0.2 (0.352), width: 16
Scan time: 3.570
The best scores are: opt bits E(85289)
XP_016868194 (OMIM: 605977) PREDICTED: mitochondri ( 175) 682 180.8 6.1e-46
XP_005250687 (OMIM: 605977) PREDICTED: mitochondri ( 175) 682 180.8 6.1e-46
NP_115938 (OMIM: 605977) mitochondrial inner membr ( 175) 682 180.8 6.1e-46
NP_001231535 (OMIM: 605977) mitochondrial inner me ( 175) 682 180.8 6.1e-46
XP_011514915 (OMIM: 605977) PREDICTED: mitochondri ( 104) 679 179.9 6.7e-46
XP_016868190 (OMIM: 605977) PREDICTED: mitochondri ( 240) 682 180.9 7.9e-46
XP_016868191 (OMIM: 605977) PREDICTED: mitochondri ( 240) 682 180.9 7.9e-46
XP_011514913 (OMIM: 605977) PREDICTED: mitochondri ( 124) 551 147.4 5e-36
XP_011514911 (OMIM: 605977) PREDICTED: mitochondri ( 132) 550 147.1 6.3e-36
XP_011514910 (OMIM: 605977) PREDICTED: mitochondri ( 176) 550 147.2 8.1e-36
XP_016868193 (OMIM: 605977) PREDICTED: mitochondri ( 176) 550 147.2 8.1e-36
XP_016868192 (OMIM: 605977) PREDICTED: mitochondri ( 184) 550 147.2 8.4e-36
XP_011514907 (OMIM: 605977) PREDICTED: mitochondri ( 203) 550 147.2 9.1e-36
XP_016868189 (OMIM: 605977) PREDICTED: mitochondri ( 268) 550 147.3 1.1e-35
XP_016868188 (OMIM: 605977) PREDICTED: mitochondri ( 268) 550 147.3 1.1e-35
XP_016872796 (OMIM: 612323) PREDICTED: mitochondri ( 111) 155 46.5 1e-05
XP_011518249 (OMIM: 612323) PREDICTED: mitochondri ( 166) 155 46.6 1.5e-05
NP_659418 (OMIM: 612323) mitochondrial inner membr ( 166) 155 46.6 1.5e-05
XP_011518244 (OMIM: 612323) PREDICTED: mitochondri ( 166) 155 46.6 1.5e-05
XP_005252869 (OMIM: 612323) PREDICTED: mitochondri ( 166) 155 46.6 1.5e-05
XP_011518245 (OMIM: 612323) PREDICTED: mitochondri ( 166) 155 46.6 1.5e-05
XP_011518248 (OMIM: 612323) PREDICTED: mitochondri ( 166) 155 46.6 1.5e-05
XP_016872794 (OMIM: 612323) PREDICTED: mitochondri ( 166) 155 46.6 1.5e-05
XP_011518246 (OMIM: 612323) PREDICTED: mitochondri ( 166) 155 46.6 1.5e-05
XP_011518247 (OMIM: 612323) PREDICTED: mitochondri ( 166) 155 46.6 1.5e-05
NP_001291203 (OMIM: 612323) mitochondrial inner me ( 166) 155 46.6 1.5e-05
>>XP_016868194 (OMIM: 605977) PREDICTED: mitochondrial i (175 aa)
initn: 679 init1: 679 opt: 682 Z-score: 945.8 bits: 180.8 E(85289): 6.1e-46
Smith-Waterman score: 682; 93.7% identity (96.4% similar) in 111 aa overlap (1-110:1-111)
10 20 30 40 50 60
pF1KE6 MAQSQGWVKRYIKAFCKGFFVAVPVAVTFLDRVACVARVEGASMQPSLNPGGSQSSDVVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAQSQGWVKRYIKAFCKGFFVAVPVAVTFLDRVACVARVEGASMQPSLNPGGSQSSDVVL
10 20 30 40 50 60
70 80 90 100 110
pF1KE6 LNHWKVRNFEVHRGDIVSLVSPKNPEQKIIKRVIALEGDIVRD-GRKLKRI
:::::::::::::::::::::::::::::::::::::::::: :.: . .
XP_016 LNHWKVRNFEVHRGDIVSLVSPKNPEQKIIKRVIALEGDIVRTIGHKNRYVKVPRGHIWV
70 80 90 100 110 120
XP_016 EGDHHGHSFDSNSFGPVSLGLLHAHATHILWPPERWQKLESVLPPERLPVQREEE
130 140 150 160 170
>>XP_005250687 (OMIM: 605977) PREDICTED: mitochondrial i (175 aa)
initn: 679 init1: 679 opt: 682 Z-score: 945.8 bits: 180.8 E(85289): 6.1e-46
Smith-Waterman score: 682; 93.7% identity (96.4% similar) in 111 aa overlap (1-110:1-111)
10 20 30 40 50 60
pF1KE6 MAQSQGWVKRYIKAFCKGFFVAVPVAVTFLDRVACVARVEGASMQPSLNPGGSQSSDVVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MAQSQGWVKRYIKAFCKGFFVAVPVAVTFLDRVACVARVEGASMQPSLNPGGSQSSDVVL
10 20 30 40 50 60
70 80 90 100 110
pF1KE6 LNHWKVRNFEVHRGDIVSLVSPKNPEQKIIKRVIALEGDIVRD-GRKLKRI
:::::::::::::::::::::::::::::::::::::::::: :.: . .
XP_005 LNHWKVRNFEVHRGDIVSLVSPKNPEQKIIKRVIALEGDIVRTIGHKNRYVKVPRGHIWV
70 80 90 100 110 120
XP_005 EGDHHGHSFDSNSFGPVSLGLLHAHATHILWPPERWQKLESVLPPERLPVQREEE
130 140 150 160 170
>>NP_115938 (OMIM: 605977) mitochondrial inner membrane (175 aa)
initn: 679 init1: 679 opt: 682 Z-score: 945.8 bits: 180.8 E(85289): 6.1e-46
Smith-Waterman score: 682; 93.7% identity (96.4% similar) in 111 aa overlap (1-110:1-111)
10 20 30 40 50 60
pF1KE6 MAQSQGWVKRYIKAFCKGFFVAVPVAVTFLDRVACVARVEGASMQPSLNPGGSQSSDVVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 MAQSQGWVKRYIKAFCKGFFVAVPVAVTFLDRVACVARVEGASMQPSLNPGGSQSSDVVL
10 20 30 40 50 60
70 80 90 100 110
pF1KE6 LNHWKVRNFEVHRGDIVSLVSPKNPEQKIIKRVIALEGDIVRD-GRKLKRI
:::::::::::::::::::::::::::::::::::::::::: :.: . .
NP_115 LNHWKVRNFEVHRGDIVSLVSPKNPEQKIIKRVIALEGDIVRTIGHKNRYVKVPRGHIWV
70 80 90 100 110 120
NP_115 EGDHHGHSFDSNSFGPVSLGLLHAHATHILWPPERWQKLESVLPPERLPVQREEE
130 140 150 160 170
>>NP_001231535 (OMIM: 605977) mitochondrial inner membra (175 aa)
initn: 679 init1: 679 opt: 682 Z-score: 945.8 bits: 180.8 E(85289): 6.1e-46
Smith-Waterman score: 682; 93.7% identity (96.4% similar) in 111 aa overlap (1-110:1-111)
10 20 30 40 50 60
pF1KE6 MAQSQGWVKRYIKAFCKGFFVAVPVAVTFLDRVACVARVEGASMQPSLNPGGSQSSDVVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAQSQGWVKRYIKAFCKGFFVAVPVAVTFLDRVACVARVEGASMQPSLNPGGSQSSDVVL
10 20 30 40 50 60
70 80 90 100 110
pF1KE6 LNHWKVRNFEVHRGDIVSLVSPKNPEQKIIKRVIALEGDIVRD-GRKLKRI
:::::::::::::::::::::::::::::::::::::::::: :.: . .
NP_001 LNHWKVRNFEVHRGDIVSLVSPKNPEQKIIKRVIALEGDIVRTIGHKNRYVKVPRGHIWV
70 80 90 100 110 120
NP_001 EGDHHGHSFDSNSFGPVSLGLLHAHATHILWPPERWQKLESVLPPERLPVQREEE
130 140 150 160 170
>>XP_011514915 (OMIM: 605977) PREDICTED: mitochondrial i (104 aa)
initn: 679 init1: 679 opt: 679 Z-score: 945.0 bits: 179.9 E(85289): 6.7e-46
Smith-Waterman score: 679; 100.0% identity (100.0% similar) in 102 aa overlap (1-102:1-102)
10 20 30 40 50 60
pF1KE6 MAQSQGWVKRYIKAFCKGFFVAVPVAVTFLDRVACVARVEGASMQPSLNPGGSQSSDVVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAQSQGWVKRYIKAFCKGFFVAVPVAVTFLDRVACVARVEGASMQPSLNPGGSQSSDVVL
10 20 30 40 50 60
70 80 90 100 110
pF1KE6 LNHWKVRNFEVHRGDIVSLVSPKNPEQKIIKRVIALEGDIVRDGRKLKRI
::::::::::::::::::::::::::::::::::::::::::
XP_011 LNHWKVRNFEVHRGDIVSLVSPKNPEQKIIKRVIALEGDIVRFP
70 80 90 100
>>XP_016868190 (OMIM: 605977) PREDICTED: mitochondrial i (240 aa)
initn: 679 init1: 679 opt: 682 Z-score: 943.7 bits: 180.9 E(85289): 7.9e-46
Smith-Waterman score: 682; 93.7% identity (96.4% similar) in 111 aa overlap (1-110:1-111)
10 20 30 40 50 60
pF1KE6 MAQSQGWVKRYIKAFCKGFFVAVPVAVTFLDRVACVARVEGASMQPSLNPGGSQSSDVVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAQSQGWVKRYIKAFCKGFFVAVPVAVTFLDRVACVARVEGASMQPSLNPGGSQSSDVVL
10 20 30 40 50 60
70 80 90 100 110
pF1KE6 LNHWKVRNFEVHRGDIVSLVSPKNPEQKIIKRVIALEGDIVRD-GRKLKRI
:::::::::::::::::::::::::::::::::::::::::: :.: . .
XP_016 LNHWKVRNFEVHRGDIVSLVSPKNPEQKIIKRVIALEGDIVRTIGHKNRYVKVPRGHIWV
70 80 90 100 110 120
XP_016 EGDHHGHSFDSNSFGPCHICKDHSSHFYQVNSQRKKKRFRKRKKKMLLSLTQHYLLGTKA
130 140 150 160 170 180
>>XP_016868191 (OMIM: 605977) PREDICTED: mitochondrial i (240 aa)
initn: 679 init1: 679 opt: 682 Z-score: 943.7 bits: 180.9 E(85289): 7.9e-46
Smith-Waterman score: 682; 93.7% identity (96.4% similar) in 111 aa overlap (1-110:1-111)
10 20 30 40 50 60
pF1KE6 MAQSQGWVKRYIKAFCKGFFVAVPVAVTFLDRVACVARVEGASMQPSLNPGGSQSSDVVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAQSQGWVKRYIKAFCKGFFVAVPVAVTFLDRVACVARVEGASMQPSLNPGGSQSSDVVL
10 20 30 40 50 60
70 80 90 100 110
pF1KE6 LNHWKVRNFEVHRGDIVSLVSPKNPEQKIIKRVIALEGDIVRD-GRKLKRI
:::::::::::::::::::::::::::::::::::::::::: :.: . .
XP_016 LNHWKVRNFEVHRGDIVSLVSPKNPEQKIIKRVIALEGDIVRTIGHKNRYVKVPRGHIWV
70 80 90 100 110 120
XP_016 EGDHHGHSFDSNSFGPCHICKDHSSHFYQVNSQRKKKRFRKRKKKMLLSLTQHYLLGTKA
130 140 150 160 170 180
>>XP_011514913 (OMIM: 605977) PREDICTED: mitochondrial i (124 aa)
initn: 551 init1: 551 opt: 551 Z-score: 767.7 bits: 147.4 E(85289): 5e-36
Smith-Waterman score: 551; 77.1% identity (88.1% similar) in 109 aa overlap (1-109:1-109)
10 20 30 40 50 60
pF1KE6 MAQSQGWVKRYIKAFCKGFFVAVPVAVTFLDRVACVARVEGASMQPSLNPGGSQSSDVVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAQSQGWVKRYIKAFCKGFFVAVPVAVTFLDRVACVARVEGASMQPSLNPGGSQSSDVVL
10 20 30 40 50 60
70 80 90 100 110
pF1KE6 LNHWKVRNFEVHRGDIVSLVSPKNPEQKIIKRVIALEGDIVRDGRKLKRI
::::::::::::::::::::. .. . ... :..: . ..::
XP_011 LNHWKVRNFEVHRGDIVSLVNKQQELMDHKREICCLNNDYLLYLANMKRGKYTFSVTPHE
70 80 90 100 110 120
XP_011 KDNR
>>XP_011514911 (OMIM: 605977) PREDICTED: mitochondrial i (132 aa)
initn: 540 init1: 540 opt: 550 Z-score: 765.9 bits: 147.1 E(85289): 6.3e-36
Smith-Waterman score: 613; 78.5% identity (78.5% similar) in 130 aa overlap (1-102:1-130)
10 20 30 40 50 60
pF1KE6 MAQSQGWVKRYIKAFCKGFFVAVPVAVTFLDRVACVARVEGASMQPSLNPGGSQSSDVVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAQSQGWVKRYIKAFCKGFFVAVPVAVTFLDRVACVARVEGASMQPSLNPGGSQSSDVVL
10 20 30 40 50 60
70 80 90
pF1KE6 LNHWKVRNFEVHRGDIVSLV----------------------------SPKNPEQKIIKR
:::::::::::::::::::: ::::::::::::
XP_011 LNHWKVRNFEVHRGDIVSLVLLTVTPSTRQQEIGGEEEEVEKDISLAKSPKNPEQKIIKR
70 80 90 100 110 120
100 110
pF1KE6 VIALEGDIVRDGRKLKRI
::::::::::
XP_011 VIALEGDIVRFP
130
>>XP_011514910 (OMIM: 605977) PREDICTED: mitochondrial i (176 aa)
initn: 540 init1: 540 opt: 550 Z-score: 764.1 bits: 147.2 E(85289): 8.1e-36
Smith-Waterman score: 616; 74.8% identity (77.0% similar) in 139 aa overlap (1-110:1-139)
10 20 30 40 50 60
pF1KE6 MAQSQGWVKRYIKAFCKGFFVAVPVAVTFLDRVACVARVEGASMQPSLNPGGSQSSDVVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAQSQGWVKRYIKAFCKGFFVAVPVAVTFLDRVACVARVEGASMQPSLNPGGSQSSDVVL
10 20 30 40 50 60
70 80 90
pF1KE6 LNHWKVRNFEVHRGDIVSLV----------------------------SPKNPEQKIIKR
:::::::::::::::::::: ::::::::::::
XP_011 LNHWKVRNFEVHRGDIVSLVLLTVTPSTRQQEIGGEEEEVEKDISLAKSPKNPEQKIIKR
70 80 90 100 110 120
100 110
pF1KE6 VIALEGDIVRD-GRKLKRI
:::::::::: :.: . .
XP_011 VIALEGDIVRTIGHKNRYVKVPRGHIWVEGDHHGHSFDSNSFGPNKPASNPWTQNE
130 140 150 160 170
110 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 10:05:58 2016 done: Tue Nov 8 10:05:58 2016
Total Scan time: 3.570 Total Display time: -0.040
Function used was FASTA [36.3.4 Apr, 2011]