FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6566, 184 aa
  1>>>pF1KE6566 184 - 184 aa - 184 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3179+/-0.000606; mu= 12.3451+/- 0.036
 mean_var=58.9220+/-11.780, 0's: 0 Z-trim(110.6): 4  B-trim: 62 in 1/49
 Lambda= 0.167084
 statistics sampled from 11732 (11734) to 11732 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.755), E-opt: 0.2 (0.36), width:  16
 Scan time:  1.530

The best scores are:                                      opt bits E(32554)
CCDS4837.1 GLO1 gene_id:2739|Hs108|chr6            ( 184) 1269 313.6 4.4e-86


>>CCDS4837.1 GLO1 gene_id:2739|Hs108|chr6                 (184 aa)
 initn: 1269 init1: 1269 opt: 1269  Z-score: 1658.9  bits: 313.6 E(32554): 4.4e-86
Smith-Waterman score: 1269; 100.0% identity (100.0% similar) in 184 aa overlap (1-184:1-184)

               10        20        30        40        50        60
pF1KE6 MAEPQPPSGGLTDEAALSCCSDADPSTKDFLLQQTMLRVKDPKKSLDFYTRVLGMTLIQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MAEPQPPSGGLTDEAALSCCSDADPSTKDFLLQQTMLRVKDPKKSLDFYTRVLGMTLIQK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 CDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWALSRKATLELTHNWGTEDDETQSYHNGNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 CDFPIMKFSLYFLAYEDKNDIPKEKDEKIAWALSRKATLELTHNWGTEDDETQSYHNGNS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 DPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKGLAFIQDPDGYWIEILNPNKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 DPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKGLAFIQDPDGYWIEILNPNKM
              130       140       150       160       170       180

           
pF1KE6 ATLM
       ::::
CCDS48 ATLM
           




184 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 14:28:04 2016 done: Tue Nov  8 14:28:04 2016
 Total Scan time:  1.530 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]