FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5784, 698 aa 1>>>pF1KE5784 698 - 698 aa - 698 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.0418+/-0.000911; mu= 6.8215+/- 0.055 mean_var=148.1075+/-29.647, 0's: 0 Z-trim(110.8): 17 B-trim: 13 in 1/51 Lambda= 0.105387 statistics sampled from 11898 (11906) to 11898 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.366), width: 16 Scan time: 3.440 The best scores are: opt bits E(32554) CCDS59449.1 ATRIP gene_id:84126|Hs108|chr3 ( 698) 4622 714.9 1e-205 CCDS2768.1 ATRIP gene_id:84126|Hs108|chr3 ( 791) 4622 714.9 1.1e-205 CCDS59450.1 ATRIP gene_id:84126|Hs108|chr3 ( 664) 4405 681.9 8.3e-196 CCDS2767.1 ATRIP gene_id:84126|Hs108|chr3 ( 764) 3716 577.1 3.2e-164 >>CCDS59449.1 ATRIP gene_id:84126|Hs108|chr3 (698 aa) initn: 4622 init1: 4622 opt: 4622 Z-score: 3806.8 bits: 714.9 E(32554): 1e-205 Smith-Waterman score: 4622; 99.9% identity (100.0% similar) in 698 aa overlap (1-698:1-698) 10 20 30 40 50 60 pF1KE5 MSKNPSGKNRETVPIKDNFELEVLQAQYKELKEKMKVMEEEVLIKNGEIKILRDSLHQTE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 MSKNPSGKNRETVPIKDNFELEVLQAQYKELKEKMKVMEEEVLIKNGEIKILRDSLHQTE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 SVLEEQRRSHFLLEQEKTQALSDKEKEFSKKLQSLQSELQFKDAEMNELRTKLQTSERAN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 SVLEEQRRSHFLLEQEKTQALSDKEKEFSKKLQSLQSELQFKDAEMNELRTKLQTSERAN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 KLAAPSVSHVSPRKNPSVVIKPEACSPQFGKTSFPTKESFSANMSLPHPCQTESGYKPLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 KLAAPSVSHVSPRKNPSVVIKPEACSPQFGKTSFPTKESFSANMSLPHPCQTESGYKPLV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 GREDSKPHSLRGDSIKQEEAQKSFVDSWRQRSNTQGSILINLLLKQPLIPGSSLSLCHLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 GREDSKPHSLRGDSIKQEEAQKSFVDSWRQRSNTQGSILINLLLKQPLIPGSSLSLCHLL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 SSSSESPAGTPLQPPGFGSTLAGMSGLRTTGSYDGSFSLSALREAQNLAFTGLNLVARNE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 SSSSESPAGTPLQPPGFGSTLAGMSGLRTTGSYDGSFSLSALREAQNLAFTGLNLVARNE 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 CSRDGDPAEGGRRAFPLCQLPGAVHFLPLVQFFIGLHCQALQDLAAAKRSGAPGDSPTHS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 CSRDGDPAEGGRRAFPLCQLPGAVHFLPLVQFFIGLHCQALQDLAAAKRSGAPGDSPTHS 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 SCVSSGVETNPEDSVCILEGFSVTALSILQHLVCHSGAVVSLLLSGVGADSAAGEGNRSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 SCVSSGVETNPEDSVCILEGFSVTALSILQHLVCHSGAVVSLLLSGVGADSAAGEGNRSL 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE5 VHRLSDGDMTSALRGVADDQGQHPLLKMLLHLLAFSSAATGHLQASVLTQCLKVLVKLAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 VHRLSDGDMTSALRGVADDQGQHPLLKMLLHLLAFSSAATGHLQASVLTQCLKVLVKLAE 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE5 NTSCDFLPRFQCVFQVLPKCLSPETPLPSVLLAVELLSLLADHDQLAPQLCSHSEGCLLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 NTSCDFLPRFQCVFQVLPKCLSPETPLPSVLLAVELLSLLADHDQLAPQLCSHSEGCLLL 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE5 LLYMYITSRPDRVALETQWLQLEQEVVWLLAKLGVQSPLPPVTGSNCQCNVEVIRALTVM :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: CCDS59 LLYMYITSRPDRVALETQWLQLEQEVVWLLAKLGVQSPLPPVTGSNCQCNVEVVRALTVM 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE5 LHRQWLTVRRAGGPPRTDQQRRTVRCLRDTVLLLHGLSQKDKLFMMHCVEVLHQFDQVMP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 LHRQWLTVRRAGGPPRTDQQRRTVRCLRDTVLLLHGLSQKDKLFMMHCVEVLHQFDQVMP 610 620 630 640 650 660 670 680 690 pF1KE5 GVSMLIRGLPDVTDCEEAALDDLCAAETDVEDPEVECG :::::::::::::::::::::::::::::::::::::: CCDS59 GVSMLIRGLPDVTDCEEAALDDLCAAETDVEDPEVECG 670 680 690 >>CCDS2768.1 ATRIP gene_id:84126|Hs108|chr3 (791 aa) initn: 4622 init1: 4622 opt: 4622 Z-score: 3806.0 bits: 714.9 E(32554): 1.1e-205 Smith-Waterman score: 4622; 99.9% identity (100.0% similar) in 698 aa overlap (1-698:94-791) 10 20 30 pF1KE5 MSKNPSGKNRETVPIKDNFELEVLQAQYKE :::::::::::::::::::::::::::::: CCDS27 DTLASQALSQCPAAARDVSSDHKVHRLLDGMSKNPSGKNRETVPIKDNFELEVLQAQYKE 70 80 90 100 110 120 40 50 60 70 80 90 pF1KE5 LKEKMKVMEEEVLIKNGEIKILRDSLHQTESVLEEQRRSHFLLEQEKTQALSDKEKEFSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 LKEKMKVMEEEVLIKNGEIKILRDSLHQTESVLEEQRRSHFLLEQEKTQALSDKEKEFSK 130 140 150 160 170 180 100 110 120 130 140 150 pF1KE5 KLQSLQSELQFKDAEMNELRTKLQTSERANKLAAPSVSHVSPRKNPSVVIKPEACSPQFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 KLQSLQSELQFKDAEMNELRTKLQTSERANKLAAPSVSHVSPRKNPSVVIKPEACSPQFG 190 200 210 220 230 240 160 170 180 190 200 210 pF1KE5 KTSFPTKESFSANMSLPHPCQTESGYKPLVGREDSKPHSLRGDSIKQEEAQKSFVDSWRQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 KTSFPTKESFSANMSLPHPCQTESGYKPLVGREDSKPHSLRGDSIKQEEAQKSFVDSWRQ 250 260 270 280 290 300 220 230 240 250 260 270 pF1KE5 RSNTQGSILINLLLKQPLIPGSSLSLCHLLSSSSESPAGTPLQPPGFGSTLAGMSGLRTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 RSNTQGSILINLLLKQPLIPGSSLSLCHLLSSSSESPAGTPLQPPGFGSTLAGMSGLRTT 310 320 330 340 350 360 280 290 300 310 320 330 pF1KE5 GSYDGSFSLSALREAQNLAFTGLNLVARNECSRDGDPAEGGRRAFPLCQLPGAVHFLPLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 GSYDGSFSLSALREAQNLAFTGLNLVARNECSRDGDPAEGGRRAFPLCQLPGAVHFLPLV 370 380 390 400 410 420 340 350 360 370 380 390 pF1KE5 QFFIGLHCQALQDLAAAKRSGAPGDSPTHSSCVSSGVETNPEDSVCILEGFSVTALSILQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 QFFIGLHCQALQDLAAAKRSGAPGDSPTHSSCVSSGVETNPEDSVCILEGFSVTALSILQ 430 440 450 460 470 480 400 410 420 430 440 450 pF1KE5 HLVCHSGAVVSLLLSGVGADSAAGEGNRSLVHRLSDGDMTSALRGVADDQGQHPLLKMLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 HLVCHSGAVVSLLLSGVGADSAAGEGNRSLVHRLSDGDMTSALRGVADDQGQHPLLKMLL 490 500 510 520 530 540 460 470 480 490 500 510 pF1KE5 HLLAFSSAATGHLQASVLTQCLKVLVKLAENTSCDFLPRFQCVFQVLPKCLSPETPLPSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 HLLAFSSAATGHLQASVLTQCLKVLVKLAENTSCDFLPRFQCVFQVLPKCLSPETPLPSV 550 560 570 580 590 600 520 530 540 550 560 570 pF1KE5 LLAVELLSLLADHDQLAPQLCSHSEGCLLLLLYMYITSRPDRVALETQWLQLEQEVVWLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 LLAVELLSLLADHDQLAPQLCSHSEGCLLLLLYMYITSRPDRVALETQWLQLEQEVVWLL 610 620 630 640 650 660 580 590 600 610 620 630 pF1KE5 AKLGVQSPLPPVTGSNCQCNVEVIRALTVMLHRQWLTVRRAGGPPRTDQQRRTVRCLRDT :::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::: CCDS27 AKLGVQSPLPPVTGSNCQCNVEVVRALTVMLHRQWLTVRRAGGPPRTDQQRRTVRCLRDT 670 680 690 700 710 720 640 650 660 670 680 690 pF1KE5 VLLLHGLSQKDKLFMMHCVEVLHQFDQVMPGVSMLIRGLPDVTDCEEAALDDLCAAETDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 VLLLHGLSQKDKLFMMHCVEVLHQFDQVMPGVSMLIRGLPDVTDCEEAALDDLCAAETDV 730 740 750 760 770 780 pF1KE5 EDPEVECG :::::::: CCDS27 EDPEVECG 790 >>CCDS59450.1 ATRIP gene_id:84126|Hs108|chr3 (664 aa) initn: 4405 init1: 4405 opt: 4405 Z-score: 3628.9 bits: 681.9 E(32554): 8.3e-196 Smith-Waterman score: 4405; 99.8% identity (100.0% similar) in 664 aa overlap (35-698:1-664) 10 20 30 40 50 60 pF1KE5 PSGKNRETVPIKDNFELEVLQAQYKELKEKMKVMEEEVLIKNGEIKILRDSLHQTESVLE :::::::::::::::::::::::::::::: CCDS59 MKVMEEEVLIKNGEIKILRDSLHQTESVLE 10 20 30 70 80 90 100 110 120 pF1KE5 EQRRSHFLLEQEKTQALSDKEKEFSKKLQSLQSELQFKDAEMNELRTKLQTSERANKLAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 EQRRSHFLLEQEKTQALSDKEKEFSKKLQSLQSELQFKDAEMNELRTKLQTSERANKLAA 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE5 PSVSHVSPRKNPSVVIKPEACSPQFGKTSFPTKESFSANMSLPHPCQTESGYKPLVGRED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 PSVSHVSPRKNPSVVIKPEACSPQFGKTSFPTKESFSANMSLPHPCQTESGYKPLVGRED 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE5 SKPHSLRGDSIKQEEAQKSFVDSWRQRSNTQGSILINLLLKQPLIPGSSLSLCHLLSSSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 SKPHSLRGDSIKQEEAQKSFVDSWRQRSNTQGSILINLLLKQPLIPGSSLSLCHLLSSSS 160 170 180 190 200 210 250 260 270 280 290 300 pF1KE5 ESPAGTPLQPPGFGSTLAGMSGLRTTGSYDGSFSLSALREAQNLAFTGLNLVARNECSRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 ESPAGTPLQPPGFGSTLAGMSGLRTTGSYDGSFSLSALREAQNLAFTGLNLVARNECSRD 220 230 240 250 260 270 310 320 330 340 350 360 pF1KE5 GDPAEGGRRAFPLCQLPGAVHFLPLVQFFIGLHCQALQDLAAAKRSGAPGDSPTHSSCVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 GDPAEGGRRAFPLCQLPGAVHFLPLVQFFIGLHCQALQDLAAAKRSGAPGDSPTHSSCVS 280 290 300 310 320 330 370 380 390 400 410 420 pF1KE5 SGVETNPEDSVCILEGFSVTALSILQHLVCHSGAVVSLLLSGVGADSAAGEGNRSLVHRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 SGVETNPEDSVCILEGFSVTALSILQHLVCHSGAVVSLLLSGVGADSAAGEGNRSLVHRL 340 350 360 370 380 390 430 440 450 460 470 480 pF1KE5 SDGDMTSALRGVADDQGQHPLLKMLLHLLAFSSAATGHLQASVLTQCLKVLVKLAENTSC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 SDGDMTSALRGVADDQGQHPLLKMLLHLLAFSSAATGHLQASVLTQCLKVLVKLAENTSC 400 410 420 430 440 450 490 500 510 520 530 540 pF1KE5 DFLPRFQCVFQVLPKCLSPETPLPSVLLAVELLSLLADHDQLAPQLCSHSEGCLLLLLYM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 DFLPRFQCVFQVLPKCLSPETPLPSVLLAVELLSLLADHDQLAPQLCSHSEGCLLLLLYM 460 470 480 490 500 510 550 560 570 580 590 600 pF1KE5 YITSRPDRVALETQWLQLEQEVVWLLAKLGVQSPLPPVTGSNCQCNVEVIRALTVMLHRQ :::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::: CCDS59 YITSRPDRVALETQWLQLEQEVVWLLAKLGVQSPLPPVTGSNCQCNVEVVRALTVMLHRQ 520 530 540 550 560 570 610 620 630 640 650 660 pF1KE5 WLTVRRAGGPPRTDQQRRTVRCLRDTVLLLHGLSQKDKLFMMHCVEVLHQFDQVMPGVSM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 WLTVRRAGGPPRTDQQRRTVRCLRDTVLLLHGLSQKDKLFMMHCVEVLHQFDQVMPGVSM 580 590 600 610 620 630 670 680 690 pF1KE5 LIRGLPDVTDCEEAALDDLCAAETDVEDPEVECG :::::::::::::::::::::::::::::::::: CCDS59 LIRGLPDVTDCEEAALDDLCAAETDVEDPEVECG 640 650 660 >>CCDS2767.1 ATRIP gene_id:84126|Hs108|chr3 (764 aa) initn: 3711 init1: 3711 opt: 3716 Z-score: 3061.8 bits: 577.1 E(32554): 3.2e-164 Smith-Waterman score: 4367; 96.1% identity (96.1% similar) in 698 aa overlap (1-698:94-764) 10 20 30 pF1KE5 MSKNPSGKNRETVPIKDNFELEVLQAQYKE :::::::::::::::::::::::::::::: CCDS27 DTLASQALSQCPAAARDVSSDHKVHRLLDGMSKNPSGKNRETVPIKDNFELEVLQAQYKE 70 80 90 100 110 120 40 50 60 70 80 90 pF1KE5 LKEKMKVMEEEVLIKNGEIKILRDSLHQTESVLEEQRRSHFLLEQEKTQALSDKEKEFSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 LKEKMKVMEEEVLIKNGEIKILRDSLHQTESVLEEQRRSHFLLEQEKTQALSDKEKEFSK 130 140 150 160 170 180 100 110 120 130 140 150 pF1KE5 KLQSLQSELQFKDAEMNELRTKLQTSERANKLAAPSVSHVSPRKNPSVVIKPEACSPQFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 KLQSLQSELQFKDAEMNELRTKLQTSERANKLAAPSVSHVSPRKNPSVVIKPEACSPQFG 190 200 210 220 230 240 160 170 180 190 200 210 pF1KE5 KTSFPTKESFSANMSLPHPCQTESGYKPLVGREDSKPHSLRGDSIKQEEAQKSFVDSWRQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 KTSFPTKESFSANMSLPHPCQTESGYKPLVGREDSKPHSLRGDSIKQEEAQKSFVDSWRQ 250 260 270 280 290 300 220 230 240 250 260 270 pF1KE5 RSNTQGSILINLLLKQPLIPGSSLSLCHLLSSSSESPAGTPLQPPGFGSTLAGMSGLRTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 RSNTQGSILINLLLKQPLIPGSSLSLCHLLSSSSESPAGTPLQPPGFGSTLAGMSGLRTT 310 320 330 340 350 360 280 290 300 310 320 330 pF1KE5 GSYDGSFSLSALREAQNLAFTGLNLVARNECSRDGDPAEGGRRAFPLCQLPGAVHFLPLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 GSYDGSFSLSALREAQNLAFTGLNLVARNECSRDGDPAEGGRRAFPLCQLPGAVHFLPLV 370 380 390 400 410 420 340 350 360 370 380 390 pF1KE5 QFFIGLHCQALQDLAAAKRSGAPGDSPTHSSCVSSGVETNPEDSVCILEGFSVTALSILQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 QFFIGLHCQALQDLAAAKRSGAPGDSPTHSSCVSSGVETNPEDSVCILEGFSVTALSILQ 430 440 450 460 470 480 400 410 420 430 440 450 pF1KE5 HLVCHSGAVVSLLLSGVGADSAAGEGNRSLVHRLSDGDMTSALRGVADDQGQHPLLKMLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 HLVCHSGAVVSLLLSGVGADSAAGEGNRSLVHRLSDGDMTSALRGVADDQGQHPLLKMLL 490 500 510 520 530 540 460 470 480 490 500 510 pF1KE5 HLLAFSSAATGHLQASVLTQCLKVLVKLAENTSCDFLPRFQCVFQVLPKCLSPETPLPSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 HLLAFSSAATGHLQASVLTQCLKVLVKLAENTSCDFLPRFQCVFQVLPKCLSPETPLPSV 550 560 570 580 590 600 520 530 540 550 560 570 pF1KE5 LLAVELLSLLADHDQLAPQLCSHSEGCLLLLLYMYITSRPDRVALETQWLQLEQEVVWLL ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 LLAVELLSLLADHDQLAPQLCSHSEGCLLLLLYMYITSRPDRVALETQWLQLEQEVV--- 610 620 630 640 650 660 580 590 600 610 620 630 pF1KE5 AKLGVQSPLPPVTGSNCQCNVEVIRALTVMLHRQWLTVRRAGGPPRTDQQRRTVRCLRDT :::::::::::::::::::::::::::::::::::: CCDS27 ------------------------RALTVMLHRQWLTVRRAGGPPRTDQQRRTVRCLRDT 670 680 690 640 650 660 670 680 690 pF1KE5 VLLLHGLSQKDKLFMMHCVEVLHQFDQVMPGVSMLIRGLPDVTDCEEAALDDLCAAETDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 VLLLHGLSQKDKLFMMHCVEVLHQFDQVMPGVSMLIRGLPDVTDCEEAALDDLCAAETDV 700 710 720 730 740 750 pF1KE5 EDPEVECG :::::::: CCDS27 EDPEVECG 760 698 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 06:37:30 2016 done: Tue Nov 8 06:37:31 2016 Total Scan time: 3.440 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]