Result of FASTA (omim) for
pFN21AE6556
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6556, 154 aa
1>>>pF1KE6556 154 - 154 aa - 154 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0224+/-0.000305; mu= 13.0782+/- 0.019
mean_var=61.2737+/-11.888, 0's: 0 Z-trim(117.1): 203 B-trim: 44 in 1/49
Lambda= 0.163847
statistics sampled from 28668 (28900) to 28668 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.339), width: 16
Scan time: 4.720
The best scores are: opt bits E(85289)
NP_037401 (OMIM: 605659) C-type lectin domain fami ( 191) 1100 267.9 5.6e-72
NP_001004419 (OMIM: 605659) C-type lectin domain f ( 194) 1100 267.9 5.6e-72
NP_001184247 (OMIM: 605659) C-type lectin domain f ( 132) 829 203.8 7.9e-53
NP_001184246 (OMIM: 605659) C-type lectin domain f ( 154) 722 178.5 3.7e-45
NP_001184248 (OMIM: 605659) C-type lectin domain f ( 95) 451 114.3 4.7e-26
XP_011518959 (OMIM: 612087) PREDICTED: C-type lect ( 136) 379 97.4 8.5e-21
XP_011518958 (OMIM: 612087) PREDICTED: C-type lect ( 139) 379 97.4 8.6e-21
NP_997258 (OMIM: 612087) C-type lectin domain fami ( 160) 379 97.5 9.7e-21
XP_011518956 (OMIM: 612087) PREDICTED: C-type lect ( 165) 379 97.5 9.9e-21
NP_001124183 (OMIM: 612087) C-type lectin domain f ( 174) 379 97.5 1e-20
NP_001772 (OMIM: 107273) early activation antigen ( 199) 358 92.5 3.6e-19
NP_005118 (OMIM: 603242) C-type lectin domain fami ( 149) 314 82.1 3.9e-16
XP_016882280 (OMIM: 616838) PREDICTED: C-type lect ( 243) 259 69.2 4.7e-12
XP_016882279 (OMIM: 616838) PREDICTED: C-type lect ( 293) 259 69.2 5.5e-12
XP_016882276 (OMIM: 616838) PREDICTED: C-type lect ( 310) 259 69.3 5.8e-12
XP_016882274 (OMIM: 616838) PREDICTED: C-type lect ( 310) 259 69.3 5.8e-12
XP_016882277 (OMIM: 616838) PREDICTED: C-type lect ( 310) 259 69.3 5.8e-12
XP_016882278 (OMIM: 616838) PREDICTED: C-type lect ( 310) 259 69.3 5.8e-12
XP_016882275 (OMIM: 616838) PREDICTED: C-type lect ( 310) 259 69.3 5.8e-12
NP_001191047 (OMIM: 616838) C-type lectin domain f ( 378) 259 69.3 6.8e-12
NP_001184145 (OMIM: 108360) asialoglycoprotein rec ( 252) 253 67.8 1.3e-11
XP_011522163 (OMIM: 108360) PREDICTED: asialoglyco ( 291) 253 67.8 1.5e-11
NP_001662 (OMIM: 108360) asialoglycoprotein recept ( 291) 253 67.8 1.5e-11
NP_006335 (OMIM: 605999) C-type lectin domain fami ( 292) 253 67.8 1.5e-11
XP_011521915 (OMIM: 605999) PREDICTED: C-type lect ( 319) 252 67.6 1.9e-11
XP_011521916 (OMIM: 605999) PREDICTED: C-type lect ( 319) 252 67.6 1.9e-11
XP_006721587 (OMIM: 108361) PREDICTED: asialoglyco ( 248) 241 64.9 9.2e-11
XP_006721589 (OMIM: 108361) PREDICTED: asialoglyco ( 287) 241 65.0 1e-10
XP_005256705 (OMIM: 108361) PREDICTED: asialoglyco ( 287) 241 65.0 1e-10
NP_550435 (OMIM: 108361) asialoglycoprotein recept ( 287) 241 65.0 1e-10
XP_016880140 (OMIM: 108361) PREDICTED: asialoglyco ( 292) 241 65.0 1e-10
NP_550436 (OMIM: 108361) asialoglycoprotein recept ( 292) 241 65.0 1e-10
XP_011522165 (OMIM: 108361) PREDICTED: asialoglyco ( 299) 241 65.0 1.1e-10
XP_011522168 (OMIM: 108361) PREDICTED: asialoglyco ( 299) 241 65.0 1.1e-10
XP_011522167 (OMIM: 108361) PREDICTED: asialoglyco ( 299) 241 65.0 1.1e-10
NP_001188281 (OMIM: 108361) asialoglycoprotein rec ( 306) 241 65.0 1.1e-10
XP_016880142 (OMIM: 108361) PREDICTED: asialoglyco ( 311) 241 65.0 1.1e-10
XP_016880141 (OMIM: 108361) PREDICTED: asialoglyco ( 311) 241 65.0 1.1e-10
NP_550434 (OMIM: 108361) asialoglycoprotein recept ( 311) 241 65.0 1.1e-10
NP_001172 (OMIM: 108361) asialoglycoprotein recept ( 311) 241 65.0 1.1e-10
XP_011522166 (OMIM: 108361) PREDICTED: asialoglyco ( 318) 241 65.0 1.1e-10
XP_011522164 (OMIM: 108361) PREDICTED: asialoglyco ( 410) 241 65.1 1.4e-10
NP_001316999 (OMIM: 605999) C-type lectin domain f ( 289) 238 64.3 1.7e-10
NP_878910 (OMIM: 605999) C-type lectin domain fami ( 316) 238 64.3 1.8e-10
NP_072092 (OMIM: 606264,613108,614079) C-type lect ( 201) 234 63.2 2.4e-10
NP_001193948 (OMIM: 151445) low affinity immunoglo ( 320) 232 62.9 4.9e-10
NP_001993 (OMIM: 151445) low affinity immunoglobul ( 321) 232 62.9 5e-10
XP_005272519 (OMIM: 151445) PREDICTED: low affinit ( 321) 232 62.9 5e-10
NP_001207429 (OMIM: 151445) low affinity immunoglo ( 321) 232 62.9 5e-10
XP_011518916 (OMIM: 609962) PREDICTED: C-type lect ( 188) 224 60.9 1.2e-09
>>NP_037401 (OMIM: 605659) C-type lectin domain family 2 (191 aa)
initn: 1100 init1: 1100 opt: 1100 Z-score: 1413.3 bits: 267.9 E(85289): 5.6e-72
Smith-Waterman score: 1100; 99.4% identity (100.0% similar) in 154 aa overlap (1-154:1-154)
10 20 30 40 50 60
pF1KE6 MHDSNNVEKDITPSELPANPGCVHSKEHSIKATLIWRLFFLIMFLTIIVCGMVAALSAIR
::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::
NP_037 MHDSNNVEKDITPSELPANPGCLHSKEHSIKATLIWRLFFLIMFLTIIVCGMVAALSAIR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 ANCHQEPSVCLQAACPESWIGFQRKCFYFSDDTKNWTSSQRFCDSQDADLAQVESFQELN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_037 ANCHQEPSVCLQAACPESWIGFQRKCFYFSDDTKNWTSSQRFCDSQDADLAQVESFQELN
70 80 90 100 110 120
130 140 150
pF1KE6 FLLRYKGPSDHWIGLSREQGQPWKWINGTEWTRQ
::::::::::::::::::::::::::::::::::
NP_037 FLLRYKGPSDHWIGLSREQGQPWKWINGTEWTRQFPILGAGECAYLNDKGASSARHYTER
130 140 150 160 170 180
NP_037 KWICSKSDIHV
190
>>NP_001004419 (OMIM: 605659) C-type lectin domain famil (194 aa)
initn: 1100 init1: 1100 opt: 1100 Z-score: 1413.2 bits: 267.9 E(85289): 5.6e-72
Smith-Waterman score: 1100; 99.4% identity (100.0% similar) in 154 aa overlap (1-154:1-154)
10 20 30 40 50 60
pF1KE6 MHDSNNVEKDITPSELPANPGCVHSKEHSIKATLIWRLFFLIMFLTIIVCGMVAALSAIR
::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::
NP_001 MHDSNNVEKDITPSELPANPGCLHSKEHSIKATLIWRLFFLIMFLTIIVCGMVAALSAIR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 ANCHQEPSVCLQAACPESWIGFQRKCFYFSDDTKNWTSSQRFCDSQDADLAQVESFQELN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ANCHQEPSVCLQAACPESWIGFQRKCFYFSDDTKNWTSSQRFCDSQDADLAQVESFQELN
70 80 90 100 110 120
130 140 150
pF1KE6 FLLRYKGPSDHWIGLSREQGQPWKWINGTEWTRQ
::::::::::::::::::::::::::::::::::
NP_001 FLLRYKGPSDHWIGLSREQGQPWKWINGTEWTRQLVMKEDGANLYVAKVSQVPRMNPRPV
130 140 150 160 170 180
NP_001 MVSYPGSRRVCLFE
190
>>NP_001184247 (OMIM: 605659) C-type lectin domain famil (132 aa)
initn: 829 init1: 829 opt: 829 Z-score: 1069.5 bits: 203.8 E(85289): 7.9e-53
Smith-Waterman score: 829; 99.2% identity (100.0% similar) in 119 aa overlap (1-119:1-119)
10 20 30 40 50 60
pF1KE6 MHDSNNVEKDITPSELPANPGCVHSKEHSIKATLIWRLFFLIMFLTIIVCGMVAALSAIR
::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::
NP_001 MHDSNNVEKDITPSELPANPGCLHSKEHSIKATLIWRLFFLIMFLTIIVCGMVAALSAIR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 ANCHQEPSVCLQAACPESWIGFQRKCFYFSDDTKNWTSSQRFCDSQDADLAQVESFQELN
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ANCHQEPSVCLQAACPESWIGFQRKCFYFSDDTKNWTSSQRFCDSQDADLAQVESFQELV
70 80 90 100 110 120
130 140 150
pF1KE6 FLLRYKGPSDHWIGLSREQGQPWKWINGTEWTRQ
NP_001 SYPGSRRVCLFE
130
>>NP_001184246 (OMIM: 605659) C-type lectin domain famil (154 aa)
initn: 845 init1: 722 opt: 722 Z-score: 931.8 bits: 178.5 E(85289): 3.7e-45
Smith-Waterman score: 775; 76.0% identity (76.0% similar) in 154 aa overlap (1-154:1-117)
10 20 30 40 50 60
pF1KE6 MHDSNNVEKDITPSELPANPGCVHSKEHSIKATLIWRLFFLIMFLTIIVCGMVAALSAIR
:::::::::::::::::::: :::
NP_001 MHDSNNVEKDITPSELPANP-------------------------------------AIR
10 20
70 80 90 100 110 120
pF1KE6 ANCHQEPSVCLQAACPESWIGFQRKCFYFSDDTKNWTSSQRFCDSQDADLAQVESFQELN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ANCHQEPSVCLQAACPESWIGFQRKCFYFSDDTKNWTSSQRFCDSQDADLAQVESFQELN
30 40 50 60 70 80
130 140 150
pF1KE6 FLLRYKGPSDHWIGLSREQGQPWKWINGTEWTRQ
::::::::::::::::::::::::::::::::::
NP_001 FLLRYKGPSDHWIGLSREQGQPWKWINGTEWTRQFPILGAGECAYLNDKGASSARHYTER
90 100 110 120 130 140
NP_001 KWICSKSDIHV
150
>>NP_001184248 (OMIM: 605659) C-type lectin domain famil (95 aa)
initn: 574 init1: 451 opt: 451 Z-score: 588.7 bits: 114.3 E(85289): 4.7e-26
Smith-Waterman score: 504; 68.9% identity (68.9% similar) in 119 aa overlap (1-119:1-82)
10 20 30 40 50 60
pF1KE6 MHDSNNVEKDITPSELPANPGCVHSKEHSIKATLIWRLFFLIMFLTIIVCGMVAALSAIR
:::::::::::::::::::: :::
NP_001 MHDSNNVEKDITPSELPANP-------------------------------------AIR
10 20
70 80 90 100 110 120
pF1KE6 ANCHQEPSVCLQAACPESWIGFQRKCFYFSDDTKNWTSSQRFCDSQDADLAQVESFQELN
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ANCHQEPSVCLQAACPESWIGFQRKCFYFSDDTKNWTSSQRFCDSQDADLAQVESFQELV
30 40 50 60 70 80
130 140 150
pF1KE6 FLLRYKGPSDHWIGLSREQGQPWKWINGTEWTRQ
NP_001 SYPGSRRVCLFE
90
>>XP_011518959 (OMIM: 612087) PREDICTED: C-type lectin d (136 aa)
initn: 366 init1: 351 opt: 379 Z-score: 494.4 bits: 97.4 E(85289): 8.5e-21
Smith-Waterman score: 379; 46.0% identity (69.4% similar) in 124 aa overlap (28-149:16-132)
10 20 30 40 50
pF1KE6 MHDSNNVEKDITPSELPANPGCVHSKEHSIKATLI--WRLFFLIMFLTIIVCGMVAALSA
: : :: :.. :. ::.::. . . :
XP_011 MINPELRDGRADGFIHRIVPKLIQNWKIG-LMCFLSIIITTVCIIMIA
10 20 30 40
60 70 80 90 100 110
pF1KE6 IRANCHQEPSVCLQAACPESWIGFQRKCFYFSDDTKNWTSSQRFCDSQDADLAQVESFQE
.. : .: .:: .:.: . :::::::::.:::.:. ::. : :.:::... ..
XP_011 TWSK-HAKP-----VACSGDWLGVRDKCFYFSDDTRNWTASKIFCSLQKAELAQIDTQED
50 60 70 80 90 100
120 130 140 150
pF1KE6 LNFLLRYKGPSDHWIGLSREQGQPWKWINGTEWTRQ
..:: :: : . :::::::.::. ::: :::
XP_011 MEFLKRYAGTDMHWIGLSRKQGDSWKWTNGTTFNG
110 120 130
>>XP_011518958 (OMIM: 612087) PREDICTED: C-type lectin d (139 aa)
initn: 366 init1: 351 opt: 379 Z-score: 494.2 bits: 97.4 E(85289): 8.6e-21
Smith-Waterman score: 379; 46.0% identity (69.4% similar) in 124 aa overlap (28-149:16-132)
10 20 30 40 50
pF1KE6 MHDSNNVEKDITPSELPANPGCVHSKEHSIKATLI--WRLFFLIMFLTIIVCGMVAALSA
: : :: :.. :. ::.::. . . :
XP_011 MINPELRDGRADGFIHRIVPKLIQNWKIG-LMCFLSIIITTVCIIMIA
10 20 30 40
60 70 80 90 100 110
pF1KE6 IRANCHQEPSVCLQAACPESWIGFQRKCFYFSDDTKNWTSSQRFCDSQDADLAQVESFQE
.. : .: .:: .:.: . :::::::::.:::.:. ::. : :.:::... ..
XP_011 TWSK-HAKP-----VACSGDWLGVRDKCFYFSDDTRNWTASKIFCSLQKAELAQIDTQED
50 60 70 80 90 100
120 130 140 150
pF1KE6 LNFLLRYKGPSDHWIGLSREQGQPWKWINGTEWTRQ
..:: :: : . :::::::.::. ::: :::
XP_011 MEFLKRYAGTDMHWIGLSRKQGDSWKWTNGTTFNGLKL
110 120 130
>>NP_997258 (OMIM: 612087) C-type lectin domain family 2 (160 aa)
initn: 366 init1: 351 opt: 379 Z-score: 493.3 bits: 97.5 E(85289): 9.7e-21
Smith-Waterman score: 379; 46.0% identity (69.4% similar) in 124 aa overlap (28-149:16-132)
10 20 30 40 50
pF1KE6 MHDSNNVEKDITPSELPANPGCVHSKEHSIKATLI--WRLFFLIMFLTIIVCGMVAALSA
: : :: :.. :. ::.::. . . :
NP_997 MINPELRDGRADGFIHRIVPKLIQNWKIG-LMCFLSIIITTVCIIMIA
10 20 30 40
60 70 80 90 100 110
pF1KE6 IRANCHQEPSVCLQAACPESWIGFQRKCFYFSDDTKNWTSSQRFCDSQDADLAQVESFQE
.. : .: .:: .:.: . :::::::::.:::.:. ::. : :.:::... ..
NP_997 TWSK-HAKP-----VACSGDWLGVRDKCFYFSDDTRNWTASKIFCSLQKAELAQIDTQED
50 60 70 80 90 100
120 130 140 150
pF1KE6 LNFLLRYKGPSDHWIGLSREQGQPWKWINGTEWTRQ
..:: :: : . :::::::.::. ::: :::
NP_997 MEFLKRYAGTDMHWIGLSRKQGDSWKWTNGTTFNGWPSNSKWSCNWSLRQWLLLLGPLR
110 120 130 140 150 160
>>XP_011518956 (OMIM: 612087) PREDICTED: C-type lectin d (165 aa)
initn: 366 init1: 351 opt: 379 Z-score: 493.1 bits: 97.5 E(85289): 9.9e-21
Smith-Waterman score: 379; 46.0% identity (69.4% similar) in 124 aa overlap (28-149:16-132)
10 20 30 40 50
pF1KE6 MHDSNNVEKDITPSELPANPGCVHSKEHSIKATLI--WRLFFLIMFLTIIVCGMVAALSA
: : :: :.. :. ::.::. . . :
XP_011 MINPELRDGRADGFIHRIVPKLIQNWKIG-LMCFLSIIITTVCIIMIA
10 20 30 40
60 70 80 90 100 110
pF1KE6 IRANCHQEPSVCLQAACPESWIGFQRKCFYFSDDTKNWTSSQRFCDSQDADLAQVESFQE
.. : .: .:: .:.: . :::::::::.:::.:. ::. : :.:::... ..
XP_011 TWSK-HAKP-----VACSGDWLGVRDKCFYFSDDTRNWTASKIFCSLQKAELAQIDTQED
50 60 70 80 90 100
120 130 140 150
pF1KE6 LNFLLRYKGPSDHWIGLSREQGQPWKWINGTEWTRQ
..:: :: : . :::::::.::. ::: :::
XP_011 MEFLKRYAGTDMHWIGLSRKQGDSWKWTNGTTFNGHQTPNGLATGASDNGFFCWDPLDRP
110 120 130 140 150 160
XP_011 LREL
>>NP_001124183 (OMIM: 612087) C-type lectin domain famil (174 aa)
initn: 366 init1: 351 opt: 379 Z-score: 492.8 bits: 97.5 E(85289): 1e-20
Smith-Waterman score: 379; 46.0% identity (69.4% similar) in 124 aa overlap (28-149:16-132)
10 20 30 40 50
pF1KE6 MHDSNNVEKDITPSELPANPGCVHSKEHSIKATLI--WRLFFLIMFLTIIVCGMVAALSA
: : :: :.. :. ::.::. . . :
NP_001 MINPELRDGRADGFIHRIVPKLIQNWKIG-LMCFLSIIITTVCIIMIA
10 20 30 40
60 70 80 90 100 110
pF1KE6 IRANCHQEPSVCLQAACPESWIGFQRKCFYFSDDTKNWTSSQRFCDSQDADLAQVESFQE
.. : .: .:: .:.: . :::::::::.:::.:. ::. : :.:::... ..
NP_001 TWSK-HAKP-----VACSGDWLGVRDKCFYFSDDTRNWTASKIFCSLQKAELAQIDTQED
50 60 70 80 90 100
120 130 140 150
pF1KE6 LNFLLRYKGPSDHWIGLSREQGQPWKWINGTEWTRQ
..:: :: : . :::::::.::. ::: :::
NP_001 MEFLKRYAGTDMHWIGLSRKQGDSWKWTNGTTFNGWFEIIGNGSFAFLSADGVHSSRGFI
110 120 130 140 150 160
NP_001 DIKWICSKPKYFL
170
154 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 14:23:02 2016 done: Tue Nov 8 14:23:03 2016
Total Scan time: 4.720 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]