FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6383, 329 aa 1>>>pF1KE6383 329 - 329 aa - 329 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1447+/-0.00075; mu= 17.0229+/- 0.045 mean_var=66.1126+/-13.193, 0's: 0 Z-trim(108.2): 12 B-trim: 0 in 0/49 Lambda= 0.157736 statistics sampled from 10063 (10070) to 10063 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.686), E-opt: 0.2 (0.309), width: 16 Scan time: 2.440 The best scores are: opt bits E(32554) CCDS33897.1 PARL gene_id:55486|Hs108|chr3 ( 329) 2285 528.6 2.7e-150 CCDS82878.1 PARL gene_id:55486|Hs108|chr3 ( 295) 1584 369.0 2.6e-102 CCDS3248.1 PARL gene_id:55486|Hs108|chr3 ( 379) 1437 335.6 3.7e-92 >>CCDS33897.1 PARL gene_id:55486|Hs108|chr3 (329 aa) initn: 2285 init1: 2285 opt: 2285 Z-score: 2811.8 bits: 528.6 E(32554): 2.7e-150 Smith-Waterman score: 2285; 100.0% identity (100.0% similar) in 329 aa overlap (1-329:1-329) 10 20 30 40 50 60 pF1KE6 MAWRGWAQRGWGCGQAWGASVGGRSCEELTAVLTPPQLLGRRFNFFIQQKCGFRKAPRKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 MAWRGWAQRGWGCGQAWGASVGGRSCEELTAVLTPPQLLGRRFNFFIQQKCGFRKAPRKV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 EPRRSDPGTSGEAYKRSALIPPVEETVFYPSPYPIRSLIKPLFFTVGFTGCAFGSAAIWQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 EPRRSDPGTSGEAYKRSALIPPVEETVFYPSPYPIRSLIKPLFFTVGFTGCAFGSAAIWQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 YESLKSRVQSYFDGIKADWLDSIRPQKEGDFRKEINKWWNNLSDGQRTVTGIIAANVLVF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 YESLKSRVQSYFDGIKADWLDSIRPQKEGDFRKEINKWWNNLSDGQRTVTGIIAANVLVF 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 CLWRVPSLQRTMIRYFTSNPASSVISNFVSYVGKVATGRYGPSLGASGAIMTVLAAVCTK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 CLWRVPSLQRTMIRYFTSNPASSVISNFVSYVGKVATGRYGPSLGASGAIMTVLAAVCTK 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 IPEGRLAIIFLPMFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGALFGIWYVTYGH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 IPEGRLAIIFLPMFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGALFGIWYVTYGH 250 260 270 280 290 300 310 320 pF1KE6 ELIWKNREPLVKIWHEIRTNGPKKGGGSK ::::::::::::::::::::::::::::: CCDS33 ELIWKNREPLVKIWHEIRTNGPKKGGGSK 310 320 >>CCDS82878.1 PARL gene_id:55486|Hs108|chr3 (295 aa) initn: 1602 init1: 1582 opt: 1584 Z-score: 1950.3 bits: 369.0 E(32554): 2.6e-102 Smith-Waterman score: 1991; 89.7% identity (89.7% similar) in 329 aa overlap (1-329:1-295) 10 20 30 40 50 60 pF1KE6 MAWRGWAQRGWGCGQAWGASVGGRSCEELTAVLTPPQLLGRRFNFFIQQKCGFRKAPRKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 MAWRGWAQRGWGCGQAWGASVGGRSCEELTAVLTPPQLLGRRFNFFIQQKCGFRKAPRKV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 EPRRSDPGTSGEAYKRSALIPPVEETVFYPSPYPIRSLIKPLFFTVGFTGCAFGSAAIWQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 EPRRSDPGTSGEAYKRSALIPPVEETVFYPSPYPIRSLIKPLFFTVGFTGCAFGSAAIWQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 YESLKSRVQSYFDGIKADWLDSIRPQKEGDFRKEINKWWNNLSDGQRTVTGIIAANVLVF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 YESLKSRVQSYFDGIKADWLDSIRPQKEGDFRKEINKWWNNLSDGQRTVTGIIAANVLVF 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 CLWRVPSLQRTMIRYFTSNPASSVISNFVSYVGKVATGRYGPSLGASGAIMTVLAAVCTK :::::::::::::::::::::::::::::::::::::::::::::: CCDS82 CLWRVPSLQRTMIRYFTSNPASSVISNFVSYVGKVATGRYGPSLGA-------------- 190 200 210 220 250 260 270 280 290 300 pF1KE6 IPEGRLAIIFLPMFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGALFGIWYVTYGH :::::::::::::::::::::::::::::::::::::::: CCDS82 --------------------ALKAIIAMDTAGMILGWKFFDHAAHLGGALFGIWYVTYGH 230 240 250 260 310 320 pF1KE6 ELIWKNREPLVKIWHEIRTNGPKKGGGSK ::::::::::::::::::::::::::::: CCDS82 ELIWKNREPLVKIWHEIRTNGPKKGGGSK 270 280 290 >>CCDS3248.1 PARL gene_id:55486|Hs108|chr3 (379 aa) initn: 1457 init1: 1437 opt: 1437 Z-score: 1768.0 bits: 335.6 E(32554): 3.7e-92 Smith-Waterman score: 2039; 85.9% identity (86.1% similar) in 361 aa overlap (1-311:1-361) 10 20 30 40 50 60 pF1KE6 MAWRGWAQRGWGCGQAWGASVGGRSCEELTAVLTPPQLLGRRFNFFIQQKCGFRKAPRKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 MAWRGWAQRGWGCGQAWGASVGGRSCEELTAVLTPPQLLGRRFNFFIQQKCGFRKAPRKV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 EPRRSDPGTSGEAYKRSALIPPVEETVFYPSPYPIRSLIKPLFFTVGFTGCAFGSAAIWQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 EPRRSDPGTSGEAYKRSALIPPVEETVFYPSPYPIRSLIKPLFFTVGFTGCAFGSAAIWQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 YESLKSRVQSYFDGIKADWLDSIRPQKEGDFRKEINKWWNNLSDGQRTVTGIIAANVLVF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 YESLKSRVQSYFDGIKADWLDSIRPQKEGDFRKEINKWWNNLSDGQRTVTGIIAANVLVF 130 140 150 160 170 180 190 200 pF1KE6 CLWRVPSLQRTMIRYFTSNPASSV------------------------------------ ::::::::::::::::::::::.: CCDS32 CLWRVPSLQRTMIRYFTSNPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSSSIVNIL 190 200 210 220 230 240 210 220 230 240 250 pF1KE6 --------------ISNFVSYVGKVATGRYGPSLGASGAIMTVLAAVCTKIPEGRLAIIF :::::::::::::::::::::::::::::::::::::::::::::: CCDS32 GQEQFMAVYLSAGVISNFVSYVGKVATGRYGPSLGASGAIMTVLAAVCTKIPEGRLAIIF 250 260 270 280 290 300 260 270 280 290 300 310 pF1KE6 LPMFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGALFGIWYVTYGHELIWKNREPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 LPMFTFTAGNALKAIIAMDTAGMILGWKFFDHAAHLGGALFGIWYVTYGHELIWKNREPL 310 320 330 340 350 360 320 pF1KE6 VKIWHEIRTNGPKKGGGSK : CCDS32 VKIWHEIRTNGPKKGGGSK 370 329 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 12:46:35 2016 done: Tue Nov 8 12:46:35 2016 Total Scan time: 2.440 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]