FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5187, 136 aa 1>>>pF1KE5187 136 - 136 aa - 136 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0534+/-0.000513; mu= 13.3440+/- 0.031 mean_var=64.0734+/-12.628, 0's: 0 Z-trim(114.8): 19 B-trim: 0 in 0/50 Lambda= 0.160227 statistics sampled from 15322 (15340) to 15322 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.834), E-opt: 0.2 (0.471), width: 16 Scan time: 1.220 The best scores are: opt bits E(32554) CCDS58345.1 TRPM1 gene_id:4308|Hs108|chr15 ( 136) 950 226.9 3.1e-60 CCDS10024.2 TRPM1 gene_id:4308|Hs108|chr15 (1603) 518 127.7 2.6e-29 CCDS58346.1 TRPM1 gene_id:4308|Hs108|chr15 (1625) 518 127.7 2.6e-29 CCDS58347.1 TRPM1 gene_id:4308|Hs108|chr15 (1642) 518 127.7 2.6e-29 CCDS43835.1 TRPM3 gene_id:80036|Hs108|chr9 (1707) 301 77.5 3.4e-14 >>CCDS58345.1 TRPM1 gene_id:4308|Hs108|chr15 (136 aa) initn: 950 init1: 950 opt: 950 Z-score: 1195.0 bits: 226.9 E(32554): 3.1e-60 Smith-Waterman score: 950; 99.3% identity (100.0% similar) in 136 aa overlap (1-136:1-136) 10 20 30 40 50 60 pF1KE5 MKDSNRCCCGQFTNQHIPPLPSATPSKNEEENKQVETQPEKWSVAKHTQSYPTDSYGVLE :::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::: CCDS58 MKDSNRCCCGQFTNQHIPPLPSATPSKNEEESKQVETQPEKWSVAKHTQSYPTDSYGVLE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 FQGGGYSNKAMVRKAFRHGATRITAFIGGQSPSPKLQIPGLLHGCGSIFLDISLKNQEIY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 FQGGGYSNKAMVRKAFRHGATRITAFIGGQSPSPKLQIPGLLHGCGSIFLDISLKNQEIY 70 80 90 100 110 120 130 pF1KE5 LCTWLLAMRLGNWTPL :::::::::::::::: CCDS58 LCTWLLAMRLGNWTPL 130 >>CCDS10024.2 TRPM1 gene_id:4308|Hs108|chr15 (1603 aa) initn: 522 init1: 499 opt: 518 Z-score: 639.7 bits: 127.7 E(32554): 2.6e-29 Smith-Waterman score: 518; 60.9% identity (76.8% similar) in 138 aa overlap (1-133:1-134) 10 20 30 40 50 60 pF1KE5 MKDSNRCCCGQFTNQHIPPLPSATPSKNEEENKQVETQPEKWSVAKHTQSYPTDSYGVLE :::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::: CCDS10 MKDSNRCCCGQFTNQHIPPLPSATPSKNEEESKQVETQPEKWSVAKHTQSYPTDSYGVLE 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 FQGGGYSNKAM-VRKAFRHGATRITAFIGGQSPSPKLQIPGLL---HGCGSIFLDISLKN ::::::::::: .: .. :. ... . . .:..: :: :: : .... : CCDS10 FQGGGYSNKAMYIRVSYD---TKPDSLLHLMVKDWQLELPKLLISVHG-GLQNFEMQPKL 70 80 90 100 110 120 130 pF1KE5 QEIYLCTWL-LAMRLGNWTPL .... . :: : : CCDS10 KQVFGKGLIKAAMTTGAWIFTGGVSTGVISHVGDALKDHSSKSRGRVCAIGIAPWGIVEN 120 130 140 150 160 170 >>CCDS58346.1 TRPM1 gene_id:4308|Hs108|chr15 (1625 aa) initn: 522 init1: 499 opt: 518 Z-score: 639.7 bits: 127.7 E(32554): 2.6e-29 Smith-Waterman score: 518; 60.9% identity (76.8% similar) in 138 aa overlap (1-133:23-156) 10 20 30 pF1KE5 MKDSNRCCCGQFTNQHIPPLPSATPSKNEEENKQVETQ :::::::::::::::::::::::::::::::.:::::: CCDS58 MGQKSWIEKTFCKRECIFVIPSMKDSNRCCCGQFTNQHIPPLPSATPSKNEEESKQVETQ 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE5 PEKWSVAKHTQSYPTDSYGVLEFQGGGYSNKAM-VRKAFRHGATRITAFIGGQSPSPKLQ ::::::::::::::::::::::::::::::::: .: .. :. ... . . .:. CCDS58 PEKWSVAKHTQSYPTDSYGVLEFQGGGYSNKAMYIRVSYD---TKPDSLLHLMVKDWQLE 70 80 90 100 110 100 110 120 130 pF1KE5 IPGLL---HGCGSIFLDISLKNQEIYLCTWL-LAMRLGNWTPL .: :: :: : .... : .... . :: : : CCDS58 LPKLLISVHG-GLQNFEMQPKLKQVFGKGLIKAAMTTGAWIFTGGVSTGVISHVGDALKD 120 130 140 150 160 170 CCDS58 HSSKSRGRVCAIGIAPWGIVENKEDLVGKDVTRVYQTMSNPLSKLSVLNNSHTHFILADN 180 190 200 210 220 230 >>CCDS58347.1 TRPM1 gene_id:4308|Hs108|chr15 (1642 aa) initn: 522 init1: 499 opt: 518 Z-score: 639.6 bits: 127.7 E(32554): 2.6e-29 Smith-Waterman score: 518; 60.9% identity (76.8% similar) in 138 aa overlap (1-133:40-173) 10 20 30 pF1KE5 MKDSNRCCCGQFTNQHIPPLPSATPSKNEE :::::::::::::::::::::::::::::: CCDS58 KSSTSGSQKGQKSWIEKTFCKRECIFVIPSMKDSNRCCCGQFTNQHIPPLPSATPSKNEE 10 20 30 40 50 60 40 50 60 70 80 pF1KE5 ENKQVETQPEKWSVAKHTQSYPTDSYGVLEFQGGGYSNKAM-VRKAFRHGATRITAFIGG :.::::::::::::::::::::::::::::::::::::::: .: .. :. ... CCDS58 ESKQVETQPEKWSVAKHTQSYPTDSYGVLEFQGGGYSNKAMYIRVSYD---TKPDSLLHL 70 80 90 100 110 120 90 100 110 120 130 pF1KE5 QSPSPKLQIPGLL---HGCGSIFLDISLKNQEIYLCTWL-LAMRLGNWTPL . . .:..: :: :: : .... : .... . :: : : CCDS58 MVKDWQLELPKLLISVHG-GLQNFEMQPKLKQVFGKGLIKAAMTTGAWIFTGGVSTGVIS 130 140 150 160 170 180 CCDS58 HVGDALKDHSSKSRGRVCAIGIAPWGIVENKEDLVGKDVTRVYQTMSNPLSKLSVLNNSH 190 200 210 220 230 240 >>CCDS43835.1 TRPM3 gene_id:80036|Hs108|chr9 (1707 aa) initn: 217 init1: 194 opt: 301 Z-score: 368.2 bits: 77.5 E(32554): 3.4e-14 Smith-Waterman score: 301; 37.9% identity (65.7% similar) in 140 aa overlap (2-133:82-217) 10 20 30 pF1KE5 MKDSNRCCCGQFTNQHIPPLPSATPSKNEEE :: .:::::.. .::. :: . .::.. CCDS43 LPSVRLLKAQKSWIERAFYKRECVHIIPSTKDPHRCCCGRLIGQHVGLTPSISVLQNEKN 60 70 80 90 100 110 40 50 60 70 80 pF1KE5 NKQV---ETQPEKWSVAKHTQSYPTDSYGVLEFQGGGYSNKAM-VRKAFRHGATRITAFI .... . : ::::..:::: :::..:..::::::.::::: :: .: :. .. CCDS43 ESRLSRNDIQSEKWSISKHTQLSPTDAFGTIEFQGGGHSNKAMYVRVSF---DTKPDLLL 120 130 140 150 160 90 100 110 120 130 pF1KE5 GGQSPSPKLQIPGLL---HGCGSIFLDISLKNQEIYLCTWL-LAMRLGNWTPL .. .:..: :: :: : .... : .... . :: : : CCDS43 HLMTKEWQLELPKLLISVHG-GLQNFELQPKLKQVFGKGLIKAAMTTGAWIFTGGVNTGV 170 180 190 200 210 220 CCDS43 IRHVGDALKDHASKSRGKICTIGIAPWGIVENQEDLIGRDVVRPYQTMSNPMSKLTVLNS 230 240 250 260 270 280 136 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:24:30 2016 done: Mon Nov 7 22:24:30 2016 Total Scan time: 1.220 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]