FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2753, 69 aa 1>>>pF1KE2753 69 - 69 aa - 69 aa Library: /omim/omim.rfq.tfa 65951994 residues in 93482 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.3306+/-0.000257; mu= 11.1021+/- 0.016 mean_var=48.0240+/- 9.434, 0's: 0 Z-trim(120.5): 13 B-trim: 1571 in 2/54 Lambda= 0.185074 statistics sampled from 37546 (37562) to 37546 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.811), E-opt: 0.2 (0.402), width: 16 Scan time: 2.500 The best scores are: opt bits E(93482) NP_001354761 (OMIM: 138322,250220) phospholipid hy ( 170) 505 141.6 2.6e-34 NP_002076 (OMIM: 138322,250220) phospholipid hydro ( 197) 505 141.6 2.9e-34 NP_001034937 (OMIM: 138322,250220) phospholipid hy ( 234) 505 141.7 3.4e-34 NP_001034936 (OMIM: 138322,250220) phospholipid hy ( 227) 299 86.7 1.2e-17 NP_056511 (OMIM: 615784) glutathione peroxidase 7 ( 187) 125 40.2 0.00098 NP_001293130 (OMIM: 617172) probable glutathione p ( 116) 113 36.8 0.0061 NP_001293126 (OMIM: 617172) probable glutathione p ( 158) 113 36.9 0.0079 NP_001008398 (OMIM: 617172) probable glutathione p ( 209) 113 37.0 0.0098 XP_006714694 (OMIM: 617172) probable glutathione p ( 210) 113 37.0 0.0099 >>NP_001354761 (OMIM: 138322,250220) phospholipid hydrop (170 aa) initn: 505 init1: 505 opt: 505 Z-score: 737.7 bits: 141.6 E(93482): 2.6e-34 Smith-Waterman score: 505; 100.0% identity (100.0% similar) in 69 aa overlap (1-69:102-170) 10 20 30 pF1KE2 MFSKICVNGDDAHPLWKWMKIQPKGKGILG :::::::::::::::::::::::::::::: NP_001 AFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILG 80 90 100 110 120 130 40 50 60 pF1KE2 NAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHYF ::::::::::::::::::::::::::::::::::::::: NP_001 NAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHYF 140 150 160 170 >>NP_002076 (OMIM: 138322,250220) phospholipid hydropero (197 aa) initn: 505 init1: 505 opt: 505 Z-score: 736.8 bits: 141.6 E(93482): 2.9e-34 Smith-Waterman score: 505; 100.0% identity (100.0% similar) in 69 aa overlap (1-69:129-197) 10 20 30 pF1KE2 MFSKICVNGDDAHPLWKWMKIQPKGKGILG :::::::::::::::::::::::::::::: NP_002 AFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILG 100 110 120 130 140 150 40 50 60 pF1KE2 NAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHYF ::::::::::::::::::::::::::::::::::::::: NP_002 NAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHYF 160 170 180 190 >>NP_001034937 (OMIM: 138322,250220) phospholipid hydrop (234 aa) initn: 505 init1: 505 opt: 505 Z-score: 735.7 bits: 141.7 E(93482): 3.4e-34 Smith-Waterman score: 505; 100.0% identity (100.0% similar) in 69 aa overlap (1-69:166-234) 10 20 30 pF1KE2 MFSKICVNGDDAHPLWKWMKIQPKGKGILG :::::::::::::::::::::::::::::: NP_001 AFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILG 140 150 160 170 180 190 40 50 60 pF1KE2 NAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHYF ::::::::::::::::::::::::::::::::::::::: NP_001 NAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHYF 200 210 220 230 >>NP_001034936 (OMIM: 138322,250220) phospholipid hydrop (227 aa) initn: 311 init1: 299 opt: 299 Z-score: 438.6 bits: 86.7 E(93482): 1.2e-17 Smith-Waterman score: 299; 100.0% identity (100.0% similar) in 40 aa overlap (1-40:129-168) 10 20 30 pF1KE2 MFSKICVNGDDAHPLWKWMKIQPKGKGILG :::::::::::::::::::::::::::::: NP_001 AFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILG 100 110 120 130 140 150 40 50 60 pF1KE2 NAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHYF :::::::::: NP_001 NAIKWNFTKFGHRLSTVPHRQERLRGEALRTHGGAPGDREGPAPLFLAPQVCGPARAPAH 160 170 180 190 200 210 >>NP_056511 (OMIM: 615784) glutathione peroxidase 7 prec (187 aa) initn: 141 init1: 76 opt: 125 Z-score: 188.8 bits: 40.2 E(93482): 0.00098 Smith-Waterman score: 125; 42.6% identity (59.3% similar) in 54 aa overlap (1-54:114-161) 10 20 30 pF1KE2 MFSKICVNGDDAHPLWKWMKIQPKGKGILG ::::: :.: ::: .:.. : .:: NP_056 FPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLA-QTSGK---- 90 100 110 120 130 40 50 60 pF1KE2 NAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHYF ::: :.:. .: :: . : NP_056 -EPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALVRKLILLKREDL 140 150 160 170 180 >>NP_001293130 (OMIM: 617172) probable glutathione perox (116 aa) initn: 114 init1: 91 opt: 113 Z-score: 174.4 bits: 36.8 E(93482): 0.0061 Smith-Waterman score: 113; 33.3% identity (65.2% similar) in 66 aa overlap (1-65:43-101) 10 20 30 pF1KE2 MFSKICVNGDDAHPLWKWMKIQPKGKGILG .: :: . :....: .... . : . NP_001 GPRAKFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSSKKEP--- 20 30 40 50 60 40 50 60 pF1KE2 NAIKWNFTKFLIDKNGCVVKRYGPMEEPL-VIEKDLPHYF .::: :.:.. .: ::: . : :::. ::. :. NP_001 ---RWNFWKYLVNPEGQVVKFWKP-EEPIEVIRPDIAALVRQVIIKKKEDL 70 80 90 100 110 >>NP_001293126 (OMIM: 617172) probable glutathione perox (158 aa) initn: 116 init1: 91 opt: 113 Z-score: 172.5 bits: 36.9 E(93482): 0.0079 Smith-Waterman score: 113; 33.3% identity (65.2% similar) in 66 aa overlap (1-65:85-143) 10 20 30 pF1KE2 MFSKICVNGDDAHPLWKWMKIQPKGKGILG .: :: . :....: .... . : . NP_001 FPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSSKKEP--- 60 70 80 90 100 110 40 50 60 pF1KE2 NAIKWNFTKFLIDKNGCVVKRYGPMEEPL-VIEKDLPHYF .::: :.:.. .: ::: . : :::. ::. :. NP_001 ---RWNFWKYLVNPEGQVVKFWKP-EEPIEVIRPDIAALVRQVIIKKKEDL 120 130 140 150 >>NP_001008398 (OMIM: 617172) probable glutathione perox (209 aa) initn: 116 init1: 91 opt: 113 Z-score: 170.8 bits: 37.0 E(93482): 0.0098 Smith-Waterman score: 113; 33.3% identity (65.2% similar) in 66 aa overlap (1-65:136-194) 10 20 30 pF1KE2 MFSKICVNGDDAHPLWKWMKIQPKGKGILG .: :: . :....: .... . : . NP_001 FPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSSKKEP--- 110 120 130 140 150 160 40 50 60 pF1KE2 NAIKWNFTKFLIDKNGCVVKRYGPMEEPL-VIEKDLPHYF .::: :.:.. .: ::: . : :::. ::. :. NP_001 ---RWNFWKYLVNPEGQVVKFWKP-EEPIEVIRPDIAALVRQVIIKKKEDL 170 180 190 200 >>XP_006714694 (OMIM: 617172) probable glutathione perox (210 aa) initn: 116 init1: 91 opt: 113 Z-score: 170.7 bits: 37.0 E(93482): 0.0099 Smith-Waterman score: 113; 33.3% identity (65.2% similar) in 66 aa overlap (1-65:137-195) 10 20 30 pF1KE2 MFSKICVNGDDAHPLWKWMKIQPKGKGILG .: :: . :....: .... . : . XP_006 FPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSSKKEP--- 110 120 130 140 150 160 40 50 60 pF1KE2 NAIKWNFTKFLIDKNGCVVKRYGPMEEPL-VIEKDLPHYF .::: :.:.. .: ::: . : :::. ::. :. XP_006 ---RWNFWKYLVNPEGQVVKFWKP-EEPIEVIRPDIAALVRQVIIKKKEDL 170 180 190 200 210 69 residues in 1 query sequences 65951994 residues in 93482 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Jun 30 14:55:32 2019 done: Sun Jun 30 14:55:33 2019 Total Scan time: 2.500 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]