FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5362, 275 aa 1>>>pF1KE5362 275 - 275 aa - 275 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.2577+/-0.000351; mu= 11.7353+/- 0.022 mean_var=106.8823+/-22.280, 0's: 0 Z-trim(116.3): 37 B-trim: 150 in 1/53 Lambda= 0.124057 statistics sampled from 27305 (27343) to 27305 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.679), E-opt: 0.2 (0.321), width: 16 Scan time: 6.910 The best scores are: opt bits E(85289) NP_001136122 (OMIM: 611208) heterogeneous nuclear ( 537) 1754 324.4 2.7e-88 XP_005264697 (OMIM: 611208) PREDICTED: heterogeneo ( 590) 1754 324.5 2.9e-88 XP_011531467 (OMIM: 611208) PREDICTED: heterogeneo ( 571) 1740 321.9 1.6e-87 NP_612403 (OMIM: 611208) heterogeneous nuclear rib ( 542) 1737 321.4 2.3e-87 XP_011531468 (OMIM: 611208) PREDICTED: heterogeneo ( 570) 1737 321.4 2.4e-87 XP_005264696 (OMIM: 611208) PREDICTED: heterogeneo ( 595) 1737 321.4 2.4e-87 NP_001524 (OMIM: 603083) heterogeneous nuclear rib ( 589) 963 182.9 1.2e-45 XP_011525188 (OMIM: 603083) PREDICTED: heterogeneo ( 518) 921 175.3 2e-43 XP_011525189 (OMIM: 603083) PREDICTED: heterogeneo ( 532) 913 173.9 5.6e-43 NP_001005335 (OMIM: 603083) heterogeneous nuclear ( 456) 747 144.1 4.3e-34 XP_011525191 (OMIM: 603083) PREDICTED: heterogeneo ( 456) 747 144.1 4.3e-34 XP_011525190 (OMIM: 603083) PREDICTED: heterogeneo ( 528) 500 100.0 9.8e-21 NP_114368 (OMIM: 600693) polypyrimidine tract-bind ( 531) 283 61.2 4.9e-09 XP_005259655 (OMIM: 600693) PREDICTED: polypyrimid ( 533) 283 61.2 4.9e-09 NP_114367 (OMIM: 600693) polypyrimidine tract-bind ( 550) 283 61.2 5e-09 NP_002810 (OMIM: 600693) polypyrimidine tract-bind ( 557) 283 61.2 5e-09 XP_005259654 (OMIM: 600693) PREDICTED: polypyrimid ( 559) 283 61.2 5.1e-09 NP_001287919 (OMIM: 608449) polypyrimidine tract-b ( 480) 270 58.8 2.3e-08 NP_067013 (OMIM: 608449) polypyrimidine tract-bind ( 531) 270 58.8 2.4e-08 NP_001287918 (OMIM: 608449) polypyrimidine tract-b ( 532) 270 58.8 2.4e-08 NP_001287917 (OMIM: 608449) polypyrimidine tract-b ( 536) 270 58.8 2.5e-08 NP_001287914 (OMIM: 608449) polypyrimidine tract-b ( 537) 270 58.8 2.5e-08 XP_011540177 (OMIM: 608449) PREDICTED: polypyrimid ( 539) 270 58.8 2.5e-08 NP_001287915 (OMIM: 608449) polypyrimidine tract-b ( 540) 270 58.8 2.5e-08 XP_011540176 (OMIM: 608449) PREDICTED: polypyrimid ( 544) 270 58.8 2.5e-08 XP_011540178 (OMIM: 608449) PREDICTED: polypyrimid ( 545) 270 58.8 2.5e-08 XP_016857440 (OMIM: 608449) PREDICTED: polypyrimid ( 548) 270 58.8 2.5e-08 NP_001287916 (OMIM: 608449) polypyrimidine tract-b ( 548) 270 58.8 2.5e-08 XP_016870854 (OMIM: 607527) PREDICTED: polypyrimid ( 452) 255 56.1 1.4e-07 NP_001231825 (OMIM: 607527) polypyrimidine tract-b ( 457) 255 56.1 1.4e-07 XP_006717409 (OMIM: 607527) PREDICTED: polypyrimid ( 521) 255 56.1 1.5e-07 NP_001157260 (OMIM: 607527) polypyrimidine tract-b ( 524) 255 56.1 1.6e-07 NP_001231826 (OMIM: 607527) polypyrimidine tract-b ( 547) 255 56.2 1.6e-07 NP_005147 (OMIM: 607527) polypyrimidine tract-bind ( 552) 255 56.2 1.6e-07 NP_001157262 (OMIM: 607527) polypyrimidine tract-b ( 555) 255 56.2 1.6e-07 NP_001231827 (OMIM: 607527) polypyrimidine tract-b ( 558) 255 56.2 1.6e-07 XP_011517567 (OMIM: 607527) PREDICTED: polypyrimid ( 561) 255 56.2 1.6e-07 >>NP_001136122 (OMIM: 611208) heterogeneous nuclear ribo (537 aa) initn: 1821 init1: 1754 opt: 1754 Z-score: 1706.1 bits: 324.4 E(85289): 2.7e-88 Smith-Waterman score: 1754; 99.6% identity (99.6% similar) in 264 aa overlap (1-264:1-264) 10 20 30 40 50 60 pF1KE5 MLARETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSFSQPEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MLARETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSFSQPEA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 GGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 ECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 YTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT 190 200 210 220 230 240 250 260 270 pF1KE5 RLNVIRNDNDSWDYTKPYLGRRGRYFIHFRMYLIC :::::::::::::::::::::: : NP_001 RLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYR 250 260 270 280 290 300 >>XP_005264697 (OMIM: 611208) PREDICTED: heterogeneous n (590 aa) initn: 1821 init1: 1754 opt: 1754 Z-score: 1705.5 bits: 324.5 E(85289): 2.9e-88 Smith-Waterman score: 1754; 99.6% identity (99.6% similar) in 264 aa overlap (1-264:1-264) 10 20 30 40 50 60 pF1KE5 MLARETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSFSQPEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MLARETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSFSQPEA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 GGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 GGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 ECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 ECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 YTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 YTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT 190 200 210 220 230 240 250 260 270 pF1KE5 RLNVIRNDNDSWDYTKPYLGRRGRYFIHFRMYLIC :::::::::::::::::::::: : XP_005 RLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYR 250 260 270 280 290 300 >>XP_011531467 (OMIM: 611208) PREDICTED: heterogeneous n (571 aa) initn: 1807 init1: 1740 opt: 1740 Z-score: 1692.1 bits: 321.9 E(85289): 1.6e-87 Smith-Waterman score: 1740; 99.2% identity (99.6% similar) in 262 aa overlap (4-265:9-270) 10 20 30 40 50 pF1KE5 MLARETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSF :::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MSSSSSSPRETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSF 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE5 SQPEAGGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SQPEAGGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFEN 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE5 IDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 IDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPI 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE5 TVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 TVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 190 200 210 220 230 240 240 250 260 270 pF1KE5 YARPTRLNVIRNDNDSWDYTKPYLGRRGRYFIHFRMYLIC :::::::::::::::::::::::::::: . XP_011 YARPTRLNVIRNDNDSWDYTKPYLGRRGSHGPLLPLPSRYRMGSRDTPELVAYPLPQASS 250 260 270 280 290 300 >>NP_612403 (OMIM: 611208) heterogeneous nuclear ribonuc (542 aa) initn: 1804 init1: 1737 opt: 1737 Z-score: 1689.6 bits: 321.4 E(85289): 2.3e-87 Smith-Waterman score: 1737; 99.6% identity (99.6% similar) in 261 aa overlap (4-264:9-269) 10 20 30 40 50 pF1KE5 MLARETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSF :::::::::::::::::::::::::::::::::::::::::::::::::::: NP_612 MSSSSSSPRETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSF 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE5 SQPEAGGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_612 SQPEAGGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFEN 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE5 IDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_612 IDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPI 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE5 TVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_612 TVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 190 200 210 220 230 240 240 250 260 270 pF1KE5 YARPTRLNVIRNDNDSWDYTKPYLGRRGRYFIHFRMYLIC ::::::::::::::::::::::::::: : NP_612 YARPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPL 250 260 270 280 290 300 >>XP_011531468 (OMIM: 611208) PREDICTED: heterogeneous n (570 aa) initn: 1804 init1: 1737 opt: 1737 Z-score: 1689.3 bits: 321.4 E(85289): 2.4e-87 Smith-Waterman score: 1737; 99.6% identity (99.6% similar) in 261 aa overlap (4-264:9-269) 10 20 30 40 50 pF1KE5 MLARETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSF :::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MSSSSSSPRETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSF 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE5 SQPEAGGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SQPEAGGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFEN 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE5 IDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 IDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPI 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE5 TVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 TVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 190 200 210 220 230 240 240 250 260 270 pF1KE5 YARPTRLNVIRNDNDSWDYTKPYLGRRGRYFIHFRMYLIC ::::::::::::::::::::::::::: : XP_011 YARPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPL 250 260 270 280 290 300 >>XP_005264696 (OMIM: 611208) PREDICTED: heterogeneous n (595 aa) initn: 1804 init1: 1737 opt: 1737 Z-score: 1689.0 bits: 321.4 E(85289): 2.4e-87 Smith-Waterman score: 1737; 99.6% identity (99.6% similar) in 261 aa overlap (4-264:9-269) 10 20 30 40 50 pF1KE5 MLARETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSF :::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MSSSSSSPRETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSF 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE5 SQPEAGGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 SQPEAGGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFEN 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE5 IDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 IDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPI 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE5 TVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 TVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 190 200 210 220 230 240 240 250 260 270 pF1KE5 YARPTRLNVIRNDNDSWDYTKPYLGRRGRYFIHFRMYLIC ::::::::::::::::::::::::::: : XP_005 YARPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPL 250 260 270 280 290 300 >>NP_001524 (OMIM: 603083) heterogeneous nuclear ribonuc (589 aa) initn: 1100 init1: 940 opt: 963 Z-score: 940.4 bits: 182.9 E(85289): 1.2e-45 Smith-Waterman score: 963; 63.4% identity (85.3% similar) in 224 aa overlap (44-263:71-294) 20 30 40 50 60 pF1KE5 ESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSFSQPEAGGSH----HKVSV ::: ::::: . . .:: . ::. . NP_001 GGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKTPA 50 60 70 80 90 100 70 80 90 100 110 120 pF1KE5 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE :::::.::: ..::::::::::..:: : ::..:: :::::::::.. .: . :..:::. NP_001 SPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADN 110 120 130 140 150 160 130 140 150 160 170 180 pF1KE5 PVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGK .::::. :: :::::..:.:::..:: . :.:::..: ::.: ::.:::::.::: : NP_001 QIYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGP 170 180 190 200 210 220 190 200 210 220 230 240 pF1KE5 VQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLNVIRNDN :::::::..::.::::::.:: ::.:::.:::::::.::::::::::.::::::..::. NP_001 VQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQ 230 240 250 260 270 280 250 260 270 pF1KE5 DSWDYTKPYLGRRGRYFIHFRMYLIC :.::::.: :. .: NP_001 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHY 290 300 310 320 330 340 >>XP_011525188 (OMIM: 603083) PREDICTED: heterogeneous n (518 aa) initn: 968 init1: 916 opt: 921 Z-score: 900.5 bits: 175.3 E(85289): 2e-43 Smith-Waterman score: 921; 61.0% identity (84.2% similar) in 228 aa overlap (37-263:2-223) 10 20 30 40 50 60 pF1KE5 YEEDREYESQAKRLKTEEGEIDYSAEEGENRREATP-RGGGDGGGGGRSFSQPEAGGSHH ::...: : : : .....: : XP_011 MRRRSVPARPRGRLGERLENYDDP------H 10 20 70 80 90 100 110 120 pF1KE5 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTF :. .:::::.::: ..::::::::::..:: : ::..:: :::::::::.. .: . :.. XP_011 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNY 30 40 50 60 70 80 130 140 150 160 170 180 pF1KE5 AADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCN :::. .::::. :: :::::..:.:::..:: . :.:::..: ::.: ::.:::::.:: XP_011 AADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICN 90 100 110 120 130 140 190 200 210 220 230 240 pF1KE5 PVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLNVI : : :::::::..::.::::::.:: ::.:::.:::::::.::::::::::.::::::. XP_011 PCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVF 150 160 170 180 190 200 250 260 270 pF1KE5 RNDNDSWDYTKPYLGRRGRYFIHFRMYLIC .::.:.::::.: :. .: XP_011 KNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPP 210 220 230 240 250 260 >>XP_011525189 (OMIM: 603083) PREDICTED: heterogeneous n (532 aa) initn: 965 init1: 913 opt: 913 Z-score: 892.6 bits: 173.9 E(85289): 5.6e-43 Smith-Waterman score: 913; 66.3% identity (88.9% similar) in 199 aa overlap (65-263:39-237) 40 50 60 70 80 90 pF1KE5 ENRREATPRGGGDGGGGGRSFSQPEAGGSHHKVSVSPVVHVRGLCESVVEADLVEALEKF ::. .:::::.::: ..::::::::::..: XP_011 AEKRRRRLEQRQQPDEQRRRSGAMENYDDPHKTPASPVVHIRGLIDGVVEADLVEALQEF 10 20 30 40 50 60 100 110 120 130 140 150 pF1KE5 GTICYVMMMPFKRQALVEFENIDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNT : : ::..:: :::::::::.. .: . :..:::. .::::. :: :::::..:.:::.. XP_011 GPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDS 70 80 90 100 110 120 160 170 180 190 200 210 pF1KE5 DDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQ :: . :.:::..: ::.: ::.:::::.::: : :::::::..::.::::::.:: :: XP_011 DDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQ 130 140 150 160 170 180 220 230 240 250 260 270 pF1KE5 KAKAALNGADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYLGRRGRYFIHFRMYLI .:::.:::::::.::::::::::.::::::..::.:.::::.: :. .: XP_011 RAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNPNKRQR 190 200 210 220 230 240 pF1KE5 C XP_011 QPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGH 250 260 270 280 290 300 >>NP_001005335 (OMIM: 603083) heterogeneous nuclear ribo (456 aa) initn: 799 init1: 747 opt: 747 Z-score: 733.0 bits: 144.1 E(85289): 4.3e-34 Smith-Waterman score: 747; 66.5% identity (88.8% similar) in 161 aa overlap (103-263:1-161) 80 90 100 110 120 130 pF1KE5 VHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADEPVY :: :::::::::.. .: . :..:::. .: NP_001 MPKKRQALVEFEDVLGACNAVNYAADNQIY 10 20 30 140 150 160 170 180 190 pF1KE5 IAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQR :::. :: :::::..:.:::..:: . :.:::..: ::.: ::.:::::.::: : ::: NP_001 IAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQR 40 50 60 70 80 90 200 210 220 230 240 250 pF1KE5 IVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLNVIRNDNDSW ::::..::.::::::.:: ::.:::.:::::::.::::::::::.::::::..::.:.: NP_001 IVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTW 100 110 120 130 140 150 260 270 pF1KE5 DYTKPYLGRRGRYFIHFRMYLIC :::.: :. .: NP_001 DYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGR 160 170 180 190 200 210 275 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 00:07:30 2016 done: Tue Nov 8 00:07:31 2016 Total Scan time: 6.910 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]