FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5362, 275 aa 1>>>pF1KE5362 275 - 275 aa - 275 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.3457+/-0.000833; mu= 11.2823+/- 0.050 mean_var=100.1359+/-20.500, 0's: 0 Z-trim(109.4): 26 B-trim: 30 in 1/49 Lambda= 0.128168 statistics sampled from 10863 (10885) to 10863 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.694), E-opt: 0.2 (0.334), width: 16 Scan time: 2.000 The best scores are: opt bits E(32554) CCDS46261.1 HNRNPLL gene_id:92906|Hs108|chr2 ( 537) 1754 334.5 1e-91 CCDS1796.2 HNRNPLL gene_id:92906|Hs108|chr2 ( 542) 1737 331.3 8.9e-91 CCDS33015.1 HNRNPL gene_id:3191|Hs108|chr19 ( 589) 963 188.2 1.2e-47 CCDS33016.1 HNRNPL gene_id:3191|Hs108|chr19 ( 456) 747 148.2 9.9e-36 >>CCDS46261.1 HNRNPLL gene_id:92906|Hs108|chr2 (537 aa) initn: 1821 init1: 1754 opt: 1754 Z-score: 1760.2 bits: 334.5 E(32554): 1e-91 Smith-Waterman score: 1754; 99.6% identity (99.6% similar) in 264 aa overlap (1-264:1-264) 10 20 30 40 50 60 pF1KE5 MLARETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSFSQPEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 MLARETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSFSQPEA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 GGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 GGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 ECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 ECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 YTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 YTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT 190 200 210 220 230 240 250 260 270 pF1KE5 RLNVIRNDNDSWDYTKPYLGRRGRYFIHFRMYLIC :::::::::::::::::::::: : CCDS46 RLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPLPSRYR 250 260 270 280 290 300 >>CCDS1796.2 HNRNPLL gene_id:92906|Hs108|chr2 (542 aa) initn: 1804 init1: 1737 opt: 1737 Z-score: 1743.2 bits: 331.3 E(32554): 8.9e-91 Smith-Waterman score: 1737; 99.6% identity (99.6% similar) in 261 aa overlap (4-264:9-269) 10 20 30 40 50 pF1KE5 MLARETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSF :::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS17 MSSSSSSPRETYEEDREYESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSF 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE5 SQPEAGGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS17 SQPEAGGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFEN 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE5 IDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS17 IDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPI 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE5 TVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS17 TVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 190 200 210 220 230 240 240 250 260 270 pF1KE5 YARPTRLNVIRNDNDSWDYTKPYLGRRGRYFIHFRMYLIC ::::::::::::::::::::::::::: : CCDS17 YARPTRLNVIRNDNDSWDYTKPYLGRRDRGKGRQRQAILGEHPSSFRHDGYGSHGPLLPL 250 260 270 280 290 300 >>CCDS33015.1 HNRNPL gene_id:3191|Hs108|chr19 (589 aa) initn: 1100 init1: 940 opt: 963 Z-score: 969.2 bits: 188.2 E(32554): 1.2e-47 Smith-Waterman score: 963; 63.4% identity (85.3% similar) in 224 aa overlap (44-263:71-294) 20 30 40 50 60 pF1KE5 ESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSFSQPEAGGSH----HKVSV ::: ::::: . . .:: . ::. . CCDS33 GGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKTPA 50 60 70 80 90 100 70 80 90 100 110 120 pF1KE5 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE :::::.::: ..::::::::::..:: : ::..:: :::::::::.. .: . :..:::. CCDS33 SPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADN 110 120 130 140 150 160 130 140 150 160 170 180 pF1KE5 PVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGK .::::. :: :::::..:.:::..:: . :.:::..: ::.: ::.:::::.::: : CCDS33 QIYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGP 170 180 190 200 210 220 190 200 210 220 230 240 pF1KE5 VQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLNVIRNDN :::::::..::.::::::.:: ::.:::.:::::::.::::::::::.::::::..::. CCDS33 VQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQ 230 240 250 260 270 280 250 260 270 pF1KE5 DSWDYTKPYLGRRGRYFIHFRMYLIC :.::::.: :. .: CCDS33 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHY 290 300 310 320 330 340 >>CCDS33016.1 HNRNPL gene_id:3191|Hs108|chr19 (456 aa) initn: 799 init1: 747 opt: 747 Z-score: 754.9 bits: 148.2 E(32554): 9.9e-36 Smith-Waterman score: 747; 66.5% identity (88.8% similar) in 161 aa overlap (103-263:1-161) 80 90 100 110 120 130 pF1KE5 VHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADEPVY :: :::::::::.. .: . :..:::. .: CCDS33 MPKKRQALVEFEDVLGACNAVNYAADNQIY 10 20 30 140 150 160 170 180 190 pF1KE5 IAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQR :::. :: :::::..:.:::..:: . :.:::..: ::.: ::.:::::.::: : ::: CCDS33 IAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQR 40 50 60 70 80 90 200 210 220 230 240 250 pF1KE5 IVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLNVIRNDNDSW ::::..::.::::::.:: ::.:::.:::::::.::::::::::.::::::..::.:.: CCDS33 IVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTW 100 110 120 130 140 150 260 270 pF1KE5 DYTKPYLGRRGRYFIHFRMYLIC :::.: :. .: CCDS33 DYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGR 160 170 180 190 200 210 275 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 00:07:29 2016 done: Tue Nov 8 00:07:30 2016 Total Scan time: 2.000 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]