FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5539, 373 aa 1>>>pF1KE5539 373 - 373 aa - 373 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8499+/-0.000863; mu= 18.9881+/- 0.052 mean_var=63.6173+/-12.926, 0's: 0 Z-trim(106.0): 24 B-trim: 0 in 0/50 Lambda= 0.160800 statistics sampled from 8715 (8733) to 8715 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.638), E-opt: 0.2 (0.268), width: 16 Scan time: 2.220 The best scores are: opt bits E(32554) CCDS33648.1 APOBEC3F gene_id:200316|Hs108|chr22 ( 373) 2715 638.6 2.6e-183 CCDS46709.1 APOBEC3D gene_id:140564|Hs108|chr22 ( 386) 1933 457.2 1.1e-128 CCDS13982.1 APOBEC3B gene_id:9582|Hs108|chr22 ( 382) 1514 360.0 2e-99 CCDS13984.1 APOBEC3G gene_id:60489|Hs108|chr22 ( 384) 1253 299.4 3.4e-81 CCDS58807.1 APOBEC3B gene_id:9582|Hs108|chr22 ( 357) 1196 286.2 3.1e-77 CCDS13983.1 APOBEC3C gene_id:27350|Hs108|chr22 ( 190) 1066 255.8 2.2e-68 CCDS41747.1 AICDA gene_id:57379|Hs108|chr12 ( 198) 490 122.2 3.9e-28 CCDS33649.1 APOBEC3F gene_id:200316|Hs108|chr22 ( 101) 420 105.8 1.8e-23 CCDS4848.1 APOBEC2 gene_id:10930|Hs108|chr6 ( 224) 402 101.8 6e-22 CCDS54531.1 APOBEC3H gene_id:164668|Hs108|chr22 ( 182) 388 98.5 4.8e-21 CCDS13985.1 APOBEC3H gene_id:164668|Hs108|chr22 ( 183) 388 98.5 4.8e-21 CCDS54530.1 APOBEC3H gene_id:164668|Hs108|chr22 ( 200) 388 98.6 5.2e-21 CCDS81662.1 AICDA gene_id:57379|Hs108|chr12 ( 188) 370 94.4 8.9e-20 CCDS13981.1 APOBEC3A gene_id:200315|Hs108|chr22 ( 199) 356 91.1 8.9e-19 CCDS54532.1 APOBEC3H gene_id:164668|Hs108|chr22 ( 154) 319 82.5 2.8e-16 CCDS8579.1 APOBEC1 gene_id:339|Hs108|chr12 ( 236) 302 78.7 6e-15 >>CCDS33648.1 APOBEC3F gene_id:200316|Hs108|chr22 (373 aa) initn: 2715 init1: 2715 opt: 2715 Z-score: 3404.4 bits: 638.6 E(32554): 2.6e-183 Smith-Waterman score: 2715; 99.5% identity (100.0% similar) in 373 aa overlap (1-373:1-373) 10 20 30 40 50 60 pF1KE5 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQVYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQVYS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 QPEHHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTISAA :::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::: CCDS33 QPEHHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLAEHPNVTLTISAA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 RLYYYWERDYRRALCRLSQAGARVKIMDDEEFAYCWENFVYSEGQPFMPWYKFDDNYAFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 RLYYYWERDYRRALCRLSQAGARVKIMDDEEFAYCWENFVYSEGQPFMPWYKFDDNYAFL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 HRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPISWKRGVFRN ::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::: CCDS33 HRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWKRGVFRN 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 QVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 QVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLT 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 IFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDDEPFKPWKGLKYN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 IFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDDEPFKPWKGLKYN 310 320 330 340 350 360 370 pF1KE5 FLFLDSKLQEILE ::::::::::::: CCDS33 FLFLDSKLQEILE 370 >>CCDS46709.1 APOBEC3D gene_id:140564|Hs108|chr22 (386 aa) initn: 2682 init1: 1906 opt: 1933 Z-score: 2423.7 bits: 457.2 E(32554): 1.1e-128 Smith-Waterman score: 2082; 76.9% identity (86.3% similar) in 386 aa overlap (1-373:1-386) 10 20 30 40 50 pF1KE5 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTK-GPSRPRLDAKIFRG--- :.:..:: .:::::::: :: :.::: :. .::::::: : : : :. .::: CCDS46 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGPVL 10 20 30 40 50 60 60 70 80 90 100 pF1KE5 ---------QVYSQPEHHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFL .:: . :.:::::::::::::.::: . :::::::::.:: ::.:...:: CCDS46 PKRQSNHRQEVYFRFENHAEMCFLSWFCGNRLPANRRFQITWFVSWNPCLPCVVKVTKFL 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE5 SEHPNVTLTISAARLYYYWERDYRRALCRLSQAGARVKIMDDEEFAYCWENFVYSEGQPF .::::::::::::::::: .::.: .: :: .::::::::: :.::::::::: .::::: CCDS46 AEHPNVTLTISAARLYYYRDRDWRWVLLRLHKAGARVKIMDYEDFAYCWENFVCNEGQPF 130 140 150 160 170 180 170 180 190 200 210 220 pF1KE5 MPWYKFDDNYAFLHRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKH ::::::::::: :::::::::::::::::::::::::::: :: :::::::::::::.:: CCDS46 MPWYKFDDNYASLHRTLKEILRNPMEAMYPHIFYFHFKNLLKACGRNESWLCFTMEVTKH 190 200 210 220 230 240 230 240 250 260 270 280 pF1KE5 HSPISWKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEV :: . :::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 HSAVFRKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEV 250 260 270 280 290 300 290 300 310 320 330 340 pF1KE5 AEFLARHSNVNLTIFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYND ::::::::::::::::::: ::::::::::: :::::::::.::::::: ::.::::.: CCDS46 AEFLARHSNVNLTIFTARLCYFWDTDYQEGLCSLSQEGASVKIMGYKDFVSCWKNFVYSD 310 320 330 340 350 360 350 360 370 pF1KE5 DEPFKPWKGLKYNFLFLDSKLQEILE ::::::::::. :: .: .:.:::. CCDS46 DEPFKPWKGLQTNFRLLKRRLREILQ 370 380 >>CCDS13982.1 APOBEC3B gene_id:9582|Hs108|chr22 (382 aa) initn: 1457 init1: 952 opt: 1514 Z-score: 1898.5 bits: 360.0 E(32554): 2e-99 Smith-Waterman score: 1514; 59.5% identity (76.0% similar) in 383 aa overlap (1-373:1-378) 10 20 30 40 50 pF1KE5 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTK-GPSRPRLDAKIFRGQVY :.:..:: .:::::::: :: :.::: :. .::::::: : : : :. .:::::: CCDS13 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVY 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE5 SQPEHHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTISA .:..::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 FKPQYHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTISA 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE5 ARLYYYWERDYRRALCRLSQAGARVKIMDDEEFAYCWENFVYSEGQPFMPWYKFDDNYAF ::::::::::::::::::::::::: ::: ::::::::::::.::: ::::::::.:::: CCDS13 ARLYYYWERDYRRALCRLSQAGARVTIMDYEEFAYCWENFVYNEGQQFMPWYKFDENYAF 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE5 LHRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPI--SWKRGV :::::::::: :. : : :.:.: . : ...::. .: . . . . . . : CCDS13 LHRTLKEILRYLMD---PDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHMGF 190 200 210 220 230 240 250 260 270 280 290 pF1KE5 FRNQVDPETHC-----HAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPE--CAGEVAEF . :.. . : ::: ::. . :.: :.:::. ::::: ::::: : CCDS13 LCNEAK-NLLCGFYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRAF 240 250 260 270 280 290 300 310 320 330 340 350 pF1KE5 LARHSNVNLTIFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDDEP : ....: : ::.::.: . : :.:.:. : . ::.: :: : .:.:::..::: . : CCDS13 LQENTHVRLRIFAARIYDY-DPLYKEALQMLRDAGAQVSIMTYDEFEYCWDTFVYRQGCP 300 310 320 330 340 350 360 370 pF1KE5 FKPWKGLKYNFLFLDSKLQEILE :.:: ::. . :...:. ::. CCDS13 FQPWDGLEEHSQALSGRLRAILQNQGN 360 370 380 >>CCDS13984.1 APOBEC3G gene_id:60489|Hs108|chr22 (384 aa) initn: 1302 init1: 460 opt: 1253 Z-score: 1571.2 bits: 299.4 E(32554): 3.4e-81 Smith-Waterman score: 1253; 50.3% identity (72.8% similar) in 386 aa overlap (1-373:1-380) 10 20 30 40 50 60 pF1KE5 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQVYS ::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::: CCDS13 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPPLDAKIFRGQVYS 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 QPEHHAEMCFLSWFCG-NQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTISA . ..: :: :. :: .: . ...::..::.:: :. .: ::.: :.::::: . CCDS13 ELKYHPEMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATFLAEDPKVTLTIFV 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE5 ARLYYYWERDYRRALCRLSQA--GAR--VKIMDDEEFAYCWENFVYSEGQPFMPWYKFDD :::::.:. ::..:: : : : : .:::. .:: .:: .::::. . : :: .. CCDS13 ARLYYFWDPDYQEALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYSQRELFEPWNNLPK 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE5 NYAFLHRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPI--SW : .:: : ::::. :. : : :.:.: . ::.:..::. .: ... . . . CCDS13 YYILLHIMLGEILRHSMD---PPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVLLNQ 190 200 210 220 230 240 250 260 270 280 pF1KE5 KRGVFRNQVDPETHC-----HAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVA .:: . ::. :. : ::: :::. . :. . .:.:: .:::::: :: :.: CCDS13 RRGFLCNQA-PHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMA 240 250 260 270 280 290 290 300 310 320 330 340 pF1KE5 EFLARHSNVNLTIFTARLYYFWDTDY-QEGLRSLSQEGASVEIMGYKDFKYCWENFVYND .:......:.: :::::.: : :::::.:.. ::.. :: :..::.::..:: .. CCDS13 KFISKNKHVSLCIFTARIYD--DQGRCQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQ 300 310 320 330 340 350 350 360 370 pF1KE5 DEPFKPWKGLKYNFLFLDSKLQEILE ::.:: :: . :...:. ::. CCDS13 GCPFQPWDGLDEHSQDLSGRLRAILQNQEN 360 370 380 >>CCDS58807.1 APOBEC3B gene_id:9582|Hs108|chr22 (357 aa) initn: 1431 init1: 949 opt: 1196 Z-score: 1500.2 bits: 286.2 E(32554): 3.1e-77 Smith-Waterman score: 1501; 59.8% identity (76.3% similar) in 376 aa overlap (1-373:1-353) 10 20 30 40 50 pF1KE5 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTK-GPSRPRLDAKIFRGQVY :.:..:: .:::::::: :: :.::: :. .::::::: : : : :. .:::::: CCDS58 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVY 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE5 SQPEHHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTISA .:..::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 FKPQYHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTISA 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE5 ARLYYYWERDYRRALCRLSQAGARVKIMDDEEFAYCWENFVYSEGQPFMPWYKFDDNYAF ::::::::::::::::::::::::: ::: ::::::::::::.::: ::::::::.:::: CCDS58 ARLYYYWERDYRRALCRLSQAGARVTIMDYEEFAYCWENFVYNEGQQFMPWYKFDENYAF 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE5 LHRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPISWKRGVFR :::::::::: :. : : :.:.: . : ...::. .: . . . : :. CCDS58 LHRTLKEILRYLMD---PDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGT---W---VLM 190 200 210 220 230 240 250 260 270 280 290 pF1KE5 NQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPE--CAGEVAEFLARHSNV .: : ....:.. :.: :.:::. ::::: ::::: :: ....: CCDS58 DQ-------H-----MGFLCNE-LDPAQIYRVTWFISWSPCFSWGCAGEVRAFLQENTHV 240 250 260 270 300 310 320 330 340 350 pF1KE5 NLTIFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDDEPFKPWKGL : ::.::.: . : :.:.:. : . ::.: :: : .:.:::..::: . ::.:: :: CCDS58 RLRIFAARIYDY-DPLYKEALQMLRDAGAQVSIMTYDEFEYCWDTFVYRQGCPFQPWDGL 280 290 300 310 320 330 360 370 pF1KE5 KYNFLFLDSKLQEILE . . :...:. ::. CCDS58 EEHSQALSGRLRAILQNQGN 340 350 >>CCDS13983.1 APOBEC3C gene_id:27350|Hs108|chr22 (190 aa) initn: 1646 init1: 1064 opt: 1066 Z-score: 1341.0 bits: 255.8 E(32554): 2.2e-68 Smith-Waterman score: 1066; 78.5% identity (89.8% similar) in 186 aa overlap (188-373:5-190) 160 170 180 190 200 210 pF1KE5 NFVYSEGQPFMPWYKFDDNYAFLHRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESW .::::.:::: :::.:::: .: :::.: CCDS13 MNPQIRNPMKAMYPGTFYFQFKNLWEANDRNETW 10 20 30 220 230 240 250 260 270 pF1KE5 LCFTMEVVKHHSPISWKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSW ::::.: .:..: .::: :::::::: :::::::::::::::::::::::.:.::::::: CCDS13 LCFTVEGIKRRSVVSWKTGVFRNQVDSETHCHAERCFLSWFCDDILSPNTKYQVTWYTSW 40 50 60 70 80 90 280 290 300 310 320 330 pF1KE5 SPCPECAGEVAEFLARHSNVNLTIFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFK ::::.::::::::::::::::::::::::::: ::::::::::::..:::: :.::: CCDS13 SPCPDCAGEVAEFLARHSNVNLTIFTARLYYFQYPCYQEGLRSLSQEGVAVEIMDYEDFK 100 110 120 130 140 150 340 350 360 370 pF1KE5 YCWENFVYNDDEPFKPWKGLKYNFLFLDSKLQEILE ::::::::::.:::::::::: :: .: .:.: :. CCDS13 YCWENFVYNDNEPFKPWKGLKTNFRLLKRRLRESLQ 160 170 180 190 >>CCDS41747.1 AICDA gene_id:57379|Hs108|chr12 (198 aa) initn: 503 init1: 232 opt: 490 Z-score: 618.6 bits: 122.2 E(32554): 3.9e-28 Smith-Waterman score: 490; 43.1% identity (69.5% similar) in 174 aa overlap (200-372:11-180) 170 180 190 200 210 220 pF1KE5 WYKFDDNYAFLHRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHS : ..:::.: : :: :..::.... . CCDS41 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSAT 10 20 30 40 230 240 250 260 270 280 pF1KE5 PISWKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAE .: : .::. . ::.: :: .. : :.:. :.:::.:::::: .:: .::. CCDS41 SFSLDFGYLRNK----NGCHVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVAD 50 60 70 80 90 290 300 310 320 330 340 pF1KE5 FLARHSNVNLTIFTARLYYFWDTDYQ-EGLRSLSQEGASVEIMGYKDFKYCWENFVYNDD :: . :..: :::::::. : . :::: : . :... :: .::. :::..:: : . CCDS41 FLRGNPNLSLRIFTARLYFCEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHE 100 110 120 130 140 150 350 360 370 pF1KE5 EPFKPWKGLKYNFLFLDSKLQEILE . :: :.::. : . :. .:..:: CCDS41 RTFKAWEGLHENSVRLSRQLRRILLPLYEVDDLRDAFRTLGL 160 170 180 190 >>CCDS33649.1 APOBEC3F gene_id:200316|Hs108|chr22 (101 aa) initn: 424 init1: 407 opt: 420 Z-score: 535.0 bits: 105.8 E(32554): 1.8e-23 Smith-Waterman score: 420; 72.5% identity (78.0% similar) in 91 aa overlap (1-89:1-88) 10 20 30 40 50 60 pF1KE5 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQVYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQV-- 10 20 30 40 50 70 80 90 100 110 pF1KE5 QPEHHAEMCF--LSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTIS :. . : :: :. : . :. : CCDS33 -PRSFIRAPFQVLSSPFGQCAPPHGTAQVQWPPQLTAGREQGRP 60 70 80 90 100 120 130 140 150 160 170 pF1KE5 AARLYYYWERDYRRALCRLSQAGARVKIMDDEEFAYCWENFVYSEGQPFMPWYKFDDNYA >>CCDS4848.1 APOBEC2 gene_id:10930|Hs108|chr6 (224 aa) initn: 545 init1: 219 opt: 402 Z-score: 507.6 bits: 101.8 E(32554): 6e-22 Smith-Waterman score: 402; 31.7% identity (68.3% similar) in 199 aa overlap (184-373:30-224) 160 170 180 190 200 pF1KE5 YCWENFVYSEGQPFMPWYKFDDNYAFLHRTLKEILRNPM------EAMYPHIFYFHFKNL :::... : : . ..: :.:.:. CCDS48 MAQKEEAAVATEAASQNGEDLENLDDPEKLKELIELPPFEIVTGERLPANFFKFQFRNV 10 20 30 40 50 210 220 230 240 250 260 pF1KE5 RKAYGRNESWLCFTMEVVKHHSPISWKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNT . . :::...::...:. . . .. .:: .. : .. :::. :.. . ..: CCDS48 EYSSGRNKTFLCYVVEAQGKGGQVQASRGYLE---DEHAAAHAEEAFFNTILP-AFDPAL 60 70 80 90 100 110 270 280 290 300 310 320 pF1KE5 NYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLYYFWDTDYQEGLRSLSQEGAS :.::::.: ::: :: .. . :.. .:. : :...::... . . : .:..:.. : . CCDS48 RYNVTWYVSSSPCAACADRIIKTLSKTKNLRLLILVGRLFMWEEPEIQAALKKLKEAGCK 120 130 140 150 160 170 330 340 350 360 370 pF1KE5 VEIMGYKDFKYCWENFVYNDD---EPFKPWKGLKYNFLFLDSKLQEILE ..:: .::.: :.::: ... . :.::. .. :::. . :: .::. CCDS48 LRIMKPQDFEYVWQNFVEQEEGESKAFQPWEDIQENFLYYEEKLADILK 180 190 200 210 220 >>CCDS54531.1 APOBEC3H gene_id:164668|Hs108|chr22 (182 aa) initn: 373 init1: 329 opt: 388 Z-score: 491.3 bits: 98.5 E(32554): 4.8e-21 Smith-Waterman score: 388; 37.2% identity (62.2% similar) in 172 aa overlap (192-358:1-164) 170 180 190 200 210 pF1KE5 SEGQPFMPWYKFDDNYAFLHRTLKEILRNPMEAMYPHIFYFHFKN---LRKAYGRNESWL : . . : ..:.: ::. : .. : CCDS54 MALLTAETFRLQFNNKRRLRRPYYPRKALL 10 20 30 220 230 240 250 260 270 pF1KE5 CFTMEVVKHHSPISWKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWS :. . . .: :: :.:. .:::: ::.. . . :. . :.:: : .:: CCDS54 CYQLTPQNGSTPT---RGYFENK----KKCHAEICFINEIKSMGLDETQCYQVTCYLTWS 40 50 60 70 80 280 290 300 310 320 330 pF1KE5 PCPECAGEVAEFLARHSNVNLTIFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKY :: :: :...:. :...:: ::..:::: : :.::: : . ::.::. .: CCDS54 PCSSCAWELVDFIKAHDHLNLGIFASRLYYHWCKPQQKGLRLLCGSQVPVEVMGFPEFAD 90 100 110 120 130 140 340 350 360 370 pF1KE5 CWENFVYNDDEP--FKPWKGLKYNFLFLDSKLQEILE :::::: . ..: :.:.: :. CCDS54 CWENFV-DHEKPLSFNPYKMLEELDKNSRAIKRRLERIKS 150 160 170 180 373 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 01:37:40 2016 done: Tue Nov 8 01:37:40 2016 Total Scan time: 2.220 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]