FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6547, 101 aa 1>>>pF1KE6547 101 - 101 aa - 101 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9960+/-0.000283; mu= 11.6728+/- 0.018 mean_var=59.8672+/-11.654, 0's: 0 Z-trim(118.2): 2 B-trim: 35 in 1/53 Lambda= 0.165760 statistics sampled from 30856 (30857) to 30856 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.752), E-opt: 0.2 (0.362), width: 16 Scan time: 3.910 The best scores are: opt bits E(85289) NP_000474 (OMIM: 207750,608083) apolipoprotein C-I ( 101) 629 157.7 2.9e-39 >>NP_000474 (OMIM: 207750,608083) apolipoprotein C-II pr (101 aa) initn: 629 init1: 629 opt: 629 Z-score: 826.0 bits: 157.7 E(85289): 2.9e-39 Smith-Waterman score: 629; 99.0% identity (100.0% similar) in 101 aa overlap (1-101:1-101) 10 20 30 40 50 60 pF1KE6 MGTRLLPALFLVLLVLGFEVQGTQQPQQDEMPSPTLLTQVKESLSSYWESAKTAAQNLYE :::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::: NP_000 MGTRLLPALFLVLLVLGFEVQGTQQPQQDEMPSPTFLTQVKESLSSYWESAKTAAQNLYE 10 20 30 40 50 60 70 80 90 100 pF1KE6 KTYLPAVDEKLRDLYSKSTAAMSTYTGIFTDQVLSVLKGEE ::::::::::::::::::::::::::::::::::::::::: NP_000 KTYLPAVDEKLRDLYSKSTAAMSTYTGIFTDQVLSVLKGEE 70 80 90 100 101 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:18:03 2016 done: Tue Nov 8 14:18:03 2016 Total Scan time: 3.910 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]