FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6547, 101 aa 1>>>pF1KE6547 101 - 101 aa - 101 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0988+/-0.000602; mu= 10.9023+/- 0.037 mean_var=58.8181+/-11.584, 0's: 0 Z-trim(111.1): 2 B-trim: 82 in 2/49 Lambda= 0.167232 statistics sampled from 12133 (12134) to 12133 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.373), width: 16 Scan time: 1.370 The best scores are: opt bits E(32554) CCDS12650.1 APOC2 gene_id:344|Hs108|chr19 ( 101) 629 159.0 4.5e-40 >>CCDS12650.1 APOC2 gene_id:344|Hs108|chr19 (101 aa) initn: 629 init1: 629 opt: 629 Z-score: 833.0 bits: 159.0 E(32554): 4.5e-40 Smith-Waterman score: 629; 99.0% identity (100.0% similar) in 101 aa overlap (1-101:1-101) 10 20 30 40 50 60 pF1KE6 MGTRLLPALFLVLLVLGFEVQGTQQPQQDEMPSPTLLTQVKESLSSYWESAKTAAQNLYE :::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::: CCDS12 MGTRLLPALFLVLLVLGFEVQGTQQPQQDEMPSPTFLTQVKESLSSYWESAKTAAQNLYE 10 20 30 40 50 60 70 80 90 100 pF1KE6 KTYLPAVDEKLRDLYSKSTAAMSTYTGIFTDQVLSVLKGEE ::::::::::::::::::::::::::::::::::::::::: CCDS12 KTYLPAVDEKLRDLYSKSTAAMSTYTGIFTDQVLSVLKGEE 70 80 90 100 101 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:18:02 2016 done: Tue Nov 8 14:18:02 2016 Total Scan time: 1.370 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]