FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2675, 324 aa 1>>>pF1KE2675 324 - 324 aa - 324 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1914+/-0.000838; mu= 16.7303+/- 0.050 mean_var=67.4579+/-13.166, 0's: 0 Z-trim(107.0): 21 B-trim: 0 in 0/50 Lambda= 0.156156 statistics sampled from 9290 (9300) to 9290 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.286), width: 16 Scan time: 2.510 The best scores are: opt bits E(32554) CCDS586.1 TMEM59 gene_id:9528|Hs108|chr1 ( 323) 2149 492.9 1.4e-139 CCDS81329.1 TMEM59 gene_id:9528|Hs108|chr1 ( 192) 1242 288.5 3e-78 CCDS81330.1 TMEM59 gene_id:9528|Hs108|chr1 ( 145) 904 212.2 2e-55 CCDS12383.1 TMEM59L gene_id:25789|Hs108|chr19 ( 342) 380 94.4 1.4e-19 >>CCDS586.1 TMEM59 gene_id:9528|Hs108|chr1 (323 aa) initn: 1419 init1: 1419 opt: 2149 Z-score: 2619.4 bits: 492.9 E(32554): 1.4e-139 Smith-Waterman score: 2149; 99.4% identity (99.4% similar) in 324 aa overlap (1-324:1-323) 10 20 30 40 50 60 pF1KE2 MAAPKGSLWVRTQLGLPPLLLLTMALAGGSGTASAEAFDSVLGDTASCHRACQLTYPLHT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 MAAPKGSLWVRTQLGLPPLLLLTMALAGGSGTASAEAFDSVLGDTASCHRACQLTYPLHT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 YPKEEELYACQRGCRLFSICQFVDDGIDLNRTKLECESACTEAYSQSDEQYACHLGCQNQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 YPKEEELYACQRGCRLFSICQFVDDGIDLNRTKLECESACTEAYSQSDEQYACHLGCQNQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 LPFAELRQEQLMSLMPKMHLLFPLTLVRSFWSDMMDSAQSFITSSWTFYLQADDGKIVIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 LPFAELRQEQLMSLMPKMHLLFPLTLVRSFWSDMMDSAQSFITSSWTFYLQADDGKIVIF 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 QSKPEIQYAPHLEQEPTNLRESSLSKMSSDLQMRNSQAHRNFLEDGESDGFLRCLSLNSG :::::::::::::::::::::::::::: :::::::::::::::::::::::::::::: CCDS58 QSKPEIQYAPHLEQEPTNLRESSLSKMSY-LQMRNSQAHRNFLEDGESDGFLRCLSLNSG 190 200 210 220 230 250 260 270 280 290 300 pF1KE2 WILTTTLVLSVMVLLWICCATVATAVEQYVPSEKLSIYGDLEFMNEQKLNRYPASSLVVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 WILTTTLVLSVMVLLWICCATVATAVEQYVPSEKLSIYGDLEFMNEQKLNRYPASSLVVV 240 250 260 270 280 290 310 320 pF1KE2 RSKTEDHEEAGPLPTKVNLAHSEI :::::::::::::::::::::::: CCDS58 RSKTEDHEEAGPLPTKVNLAHSEI 300 310 320 >>CCDS81329.1 TMEM59 gene_id:9528|Hs108|chr1 (192 aa) initn: 746 init1: 746 opt: 1242 Z-score: 1518.4 bits: 288.5 E(32554): 3e-78 Smith-Waterman score: 1242; 99.0% identity (99.0% similar) in 193 aa overlap (132-324:1-192) 110 120 130 140 150 160 pF1KE2 EAYSQSDEQYACHLGCQNQLPFAELRQEQLMSLMPKMHLLFPLTLVRSFWSDMMDSAQSF :::::::::::::::::::::::::::::: CCDS81 MSLMPKMHLLFPLTLVRSFWSDMMDSAQSF 10 20 30 170 180 190 200 210 220 pF1KE2 ITSSWTFYLQADDGKIVIFQSKPEIQYAPHLEQEPTNLRESSLSKMSSDLQMRNSQAHRN ::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::: CCDS81 ITSSWTFYLQADDGKIVIFQSKPEIQYAPHLEQEPTNLRESSLSKMSY-LQMRNSQAHRN 40 50 60 70 80 230 240 250 260 270 280 pF1KE2 FLEDGESDGFLRCLSLNSGWILTTTLVLSVMVLLWICCATVATAVEQYVPSEKLSIYGDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 FLEDGESDGFLRCLSLNSGWILTTTLVLSVMVLLWICCATVATAVEQYVPSEKLSIYGDL 90 100 110 120 130 140 290 300 310 320 pF1KE2 EFMNEQKLNRYPASSLVVVRSKTEDHEEAGPLPTKVNLAHSEI ::::::::::::::::::::::::::::::::::::::::::: CCDS81 EFMNEQKLNRYPASSLVVVRSKTEDHEEAGPLPTKVNLAHSEI 150 160 170 180 190 >>CCDS81330.1 TMEM59 gene_id:9528|Hs108|chr1 (145 aa) initn: 949 init1: 903 opt: 904 Z-score: 1108.6 bits: 212.2 E(32554): 2e-55 Smith-Waterman score: 904; 88.7% identity (92.1% similar) in 151 aa overlap (1-151:1-144) 10 20 30 40 50 60 pF1KE2 MAAPKGSLWVRTQLGLPPLLLLTMALAGGSGTASAEAFDSVLGDTASCHRACQLTYPLHT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 MAAPKGSLWVRTQLGLPPLLLLTMALAGGSGTASAEAFDSVLGDTASCHRACQLTYPLHT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 YPKEEELYACQRGCRLFSICQFVDDGIDLNRTKLECESACTEAYSQSDEQYACHLGCQNQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 YPKEEELYACQRGCRLFSICQFVDDGIDLNRTKLECESACTEAYSQSDEQYACHLGCQNQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 LPFAELRQEQLMSLMPKMHLLFPLTLVRSFWSDMMDSAQSFITSSWTFYLQADDGKIVIF ::::::::::. . . : .:.: : CCDS81 LPFAELRQEQV-----RNNTAFQTSLLR--WH 130 140 190 200 210 220 230 240 pF1KE2 QSKPEIQYAPHLEQEPTNLRESSLSKMSSDLQMRNSQAHRNFLEDGESDGFLRCLSLNSG >>CCDS12383.1 TMEM59L gene_id:25789|Hs108|chr19 (342 aa) initn: 533 init1: 221 opt: 380 Z-score: 465.2 bits: 94.4 E(32554): 1.4e-19 Smith-Waterman score: 545; 33.5% identity (58.6% similar) in 319 aa overlap (16-296:7-323) 10 20 30 40 50 pF1KE2 MAAPKGSLWVRTQLGLPPLLLLTMALAG---GSGTASAEAFDSVLGDTASCHRACQLTYP .:: ::: . ::. .:. .. . : :::: .:. :. CCDS12 MAAVALMPPPLLLLLLLASPPAASAPSARDPFAPQLGDTQNCQLRCR-DRD 10 20 30 40 50 60 70 80 90 100 pF1KE2 LHTYPKEEELY--------------ACQRGCRLFSICQFVDDGIDLNRTKLECESACTEA : :.. : ::.:::::::::.:: . : :. :::.::.:: CCDS12 LGPQPSQAGLEGASESPYDRAVLISACERGCRLFSICRFVARSSKPNATQTECEAACVEA 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE2 YSQSDEQYACHLGCQNQLPFAELRQEQLMSLMPKMHLLFPLTLVRSFWSDMMDSAQSFIT : . :: :: :: .: : .:.. . :. : . : : .. .:...:::.:.. CCDS12 YVKEAEQQACSHGCWSQPAEPEPEQKRKVLEAPSGALSL-LDLFSTLCNDLVNSAQGFVS 120 130 140 150 160 170 180 190 200 pF1KE2 SSWTFYLQADDGKIVIFQSKPEIQ----YAPHLEQEPTNLRESS-------------LSK :.::.:::.:.::.:.::..: .. . .:.. .. : : :.: CCDS12 STWTYYLQTDNGKVVVFQTQPIVESLGFQGGRLQRVEVTWRGSHPEALEVHVDPVGPLDK 170 180 190 200 210 220 210 220 230 240 250 260 pF1KE2 M-SSDLQMRNSQAHRNFLEDGESDGFLRCLSLNSG---WILTTTLVLSVMVLLWICCATV . .. .....:. . :. ... :: :.: :: :::. : :::.:.::. :.:. CCDS12 VRKAKIRVKTSSKAKVESEEPQDNDFLSCMSRRSGLPRWILACCLFLSVLVMLWLSCSTL 230 240 250 260 270 280 270 280 290 300 310 320 pF1KE2 ATAVEQYVPSEKLSIYGDLEFMNEQKLNRYPASSLVVVRSKTEDHEEAGPLPTKVNLAHS .:: :.. . :.. :: : :: : CCDS12 VTAPGQHLKFQPLTLEQHKGFMMEPDWPLYPPPSHACEDSLPPYKLKLDLTKL 290 300 310 320 330 340 pF1KE2 EI 324 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Thu Feb 2 14:39:48 2017 done: Thu Feb 2 14:39:48 2017 Total Scan time: 2.510 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]