Result of FASTA (ccds) for
pFN21AE5657
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5657, 483 aa
1>>>pF1KE5657 483 - 483 aa - 483 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.5213+/-0.000997; mu= -8.0504+/- 0.061
mean_var=393.5155+/-78.340, 0's: 0 Z-trim(116.1): 123 B-trim: 0 in 0/54
Lambda= 0.064654
statistics sampled from 16599 (16721) to 16599 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.79), E-opt: 0.2 (0.514), width: 16
Scan time: 3.510
The best scores are: opt bits E(32554)
CCDS53332.1 SRSF11 gene_id:9295|Hs108|chr1 ( 483) 3139 306.5 4e-83
CCDS647.1 SRSF11 gene_id:9295|Hs108|chr1 ( 484) 3127 305.4 8.8e-83
CCDS43323.1 SREK1 gene_id:140890|Hs108|chr5 ( 624) 858 93.9 5.5e-19
>>CCDS53332.1 SRSF11 gene_id:9295|Hs108|chr1 (483 aa)
initn: 3139 init1: 3139 opt: 3139 Z-score: 1605.7 bits: 306.5 E(32554): 4e-83
Smith-Waterman score: 3139; 100.0% identity (100.0% similar) in 483 aa overlap (1-483:1-483)
10 20 30 40 50 60
pF1KE5 MSNTTVVPSTAGPGPSGGPGGGGGGGGGGGGTEVIQVTNVSPSASSEQMRTLFGFLGKID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MSNTTVVPSTAGPGPSGGPGGGGGGGGGGGGTEVIQVTNVSPSASSEQMRTLFGFLGKID
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 ELRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDEAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ELRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDEAK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 ALSLLAPANAVAGLLPGGGLLPTPNPLTQIGAVPLAALGAPTLDPALAALGLPGANLNSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ALSLLAPANAVAGLLPGGGLLPTPNPLTQIGAVPLAALGAPTLDPALAALGLPGANLNSQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 SLAADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREAQSLISAAIEPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SLAADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREAQSLISAAIEPD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 KKEEKRRHSRSRSRSRRRRTPSSSRHRRSRSRSRRRSHSKSRSRRRSKSPRRRRSHSRER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 KKEEKRRHSRSRSRSRRRRTPSSSRHRRSRSRSRRRSHSKSRSRRRSKSPRRRRSHSRER
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 GRRSRSTSKTRDKKKEDKEKKRSKTPPKSYSTARRSRSASRERRRRRSRSGTRSPKKPRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GRRSRSTSKTRDKKKEDKEKKRSKTPPKSYSTARRSRSASRERRRRRSRSGTRSPKKPRS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 PKRKLSRSPSPRRHKKEKKKDKDKERSRDERERSTSKKKKSKDKEKDRERKSESDKDVKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PKRKLSRSPSPRRHKKEKKKDKDKERSRDERERSTSKKKKSKDKEKDRERKSESDKDVKV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE5 TRDYDEEEQGYDSEKEKKEEKKPIETGSPKTKECSVEKGTGDSLRESKVNGDDHHEEDMD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 TRDYDEEEQGYDSEKEKKEEKKPIETGSPKTKECSVEKGTGDSLRESKVNGDDHHEEDMD
430 440 450 460 470 480
pF1KE5 MSD
:::
CCDS53 MSD
>>CCDS647.1 SRSF11 gene_id:9295|Hs108|chr1 (484 aa)
initn: 3153 init1: 2713 opt: 3127 Z-score: 1599.7 bits: 305.4 E(32554): 8.8e-83
Smith-Waterman score: 3127; 99.8% identity (99.8% similar) in 484 aa overlap (1-483:1-484)
10 20 30 40 50 60
pF1KE5 MSNTTVVPSTAGPGPSGGPGGGGGGGGGGGGTEVIQVTNVSPSASSEQMRTLFGFLGKID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MSNTTVVPSTAGPGPSGGPGGGGGGGGGGGGTEVIQVTNVSPSASSEQMRTLFGFLGKID
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 ELRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDEAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 ELRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDEAK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 ALSLLAPANAVAGLLPGGGLLPTPNPLTQIGAVPLAALGAPTLDPALAALGLPGANLNSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 ALSLLAPANAVAGLLPGGGLLPTPNPLTQIGAVPLAALGAPTLDPALAALGLPGANLNSQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 SLAADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREAQSLISAAIEPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 SLAADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREAQSLISAAIEPD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 KKEEKRRHSRSRSRSRRRRTPSSSRHRRSRSRSRRRSHSKSRSRRRSKSPRRRRSHSRER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 KKEEKRRHSRSRSRSRRRRTPSSSRHRRSRSRSRRRSHSKSRSRRRSKSPRRRRSHSRER
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 GRRSRSTSKTRDKKKEDKEKKRSKTPPKSYSTARRSRSASRERRRRRSRSGTRSPKKPRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 GRRSRSTSKTRDKKKEDKEKKRSKTPPKSYSTARRSRSASRERRRRRSRSGTRSPKKPRS
310 320 330 340 350 360
370 380 390 400 410
pF1KE5 PKRKLSRSPSPRRHKKEKKKDKDKERSRDERERSTSKKKKSKDKEKDRERKSESDKDVK-
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 PKRKLSRSPSPRRHKKEKKKDKDKERSRDERERSTSKKKKSKDKEKDRERKSESDKDVKQ
370 380 390 400 410 420
420 430 440 450 460 470
pF1KE5 VTRDYDEEEQGYDSEKEKKEEKKPIETGSPKTKECSVEKGTGDSLRESKVNGDDHHEEDM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 VTRDYDEEEQGYDSEKEKKEEKKPIETGSPKTKECSVEKGTGDSLRESKVNGDDHHEEDM
430 440 450 460 470 480
480
pF1KE5 DMSD
::::
CCDS64 DMSD
>>CCDS43323.1 SREK1 gene_id:140890|Hs108|chr5 (624 aa)
initn: 1379 init1: 545 opt: 858 Z-score: 454.4 bits: 93.9 E(32554): 5.5e-19
Smith-Waterman score: 1114; 43.3% identity (68.5% similar) in 508 aa overlap (16-441:3-501)
10 20 30 40 50 60
pF1KE5 MSNTTVVPSTAGPGPSGGPGGGGGGGGGGGGTEVIQVTNVSPSASSEQMRTLFGFLGKID
::: : : : : : : ::::::.: ...::::::::.:::.:.
CCDS43 MNSGG-GFGLGLGFGLTPTSVIQVTNLSSAVTSEQMRTLFSFLGEIE
10 20 30 40
70 80 90 100 110 120
pF1KE5 ELRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDEAK
::::.:::..:: ::.::.:::.::.:. ::::::::::.:::::::: ::: ::.:.:
CCDS43 ELRLYPPDNAPLAFSSKVCYVKFRDPSSVGVAQHLTNTVFIDRALIVVPCAEGKIPEESK
50 60 70 80 90 100
130 140 150 160 170
pF1KE5 ALSLLAPANAVAGLLPGGGLLP--TPNPLTQIGAVPLAALGA-PT--LDPALAALG-LPG
:::::::: ....:.::.:::: :::::: .: : :..::: :. ::: .:.:: .:
CCDS43 ALSLLAPAPTMTSLMPGAGLLPIPTPNPLTTLG-VSLSSLGAIPAAALDPNIATLGEIPQ
110 120 130 140 150 160
180 190
pF1KE5 ---------------------ANLNSQSLAADQLLKLMSTV-------------DP----
.:::::. .:::::.... : .:
CCDS43 PPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFA
170 180 190 200 210 220
200 210 220
pF1KE5 --------------------------KLNHVAAGLVSPS-LKSDTSSKEIEEAMKRVREA
:.:: ..:.: . ....::.::.:::::::
CCDS43 FVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAAKELEEVMKRVREA
230 240 250 260 270 280
230 240 250 260 270 280
pF1KE5 QSLISAAIEPDK-KEEKRRHSRSRSRSR---RRRTPSSSRHRRSRSRSRRRSHSKSRSR-
::.:::::::.. : ..:. .::::..: : . : ::..::.:. : :::..::::
CCDS43 QSFISAAIEPESGKSNERKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQ
290 300 310 320 330 340
290 300 310 320 330 340
pF1KE5 ---RRSKSPRRRRSHSRERGRRSRSTSKTRDKKKEDKEKKRSKTPPKSYSTARRSRSASR
::::::...::.:::: :.::: :..:::.:. .:: . : : ...: :
CCDS43 KDRRRSKSPHKKRSKSRER-RKSRSRSHSRDKRKDTREKIKEKERVK-----EKDREKER
350 360 370 380 390
350 360 370 380 390
pF1KE5 ERRRRRSRSGTRSPKKPRSPKRKLSRSPSPRRHKKEKKKDKDKERSRD-ERERSTSKKK-
::...: . :. .: :. .:. .: . ... .:....:..:..:: :.:. .:.:
CCDS43 EREKEREKEKERGKNKDRDKEREKDRE-KDKEKDREREREKEHEKDRDKEKEKEQDKEKE
400 410 420 430 440 450
400 410 420 430 440 450
pF1KE5 KSKDKEKDRERKSESDKDVKVT-RDYDEEEQGYDSEKEKKEEKKPIETGSPKTKECSVEK
. ::. :. ..: ..:: .. :.:. ... .: .:.....
CCDS43 REKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSKTIKRK
460 470 480 490 500 510
460 470 480
pF1KE5 GTGDSLRESKVNGDDHHEEDMDMSD
CCDS43 SSRSPSPRSRNKKDKKREKERDHISERRERERSTSMRKSSNDRDGKEKLEKNSTSLKEKE
520 530 540 550 560 570
483 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 05:35:49 2016 done: Tue Nov 8 05:35:49 2016
Total Scan time: 3.510 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]