FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5339, 264 aa 1>>>pF1KE5339 264 - 264 aa - 264 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1577+/-0.000386; mu= 15.2893+/- 0.024 mean_var=59.1023+/-11.775, 0's: 0 Z-trim(110.8): 9 B-trim: 0 in 0/54 Lambda= 0.166829 statistics sampled from 19196 (19199) to 19196 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.597), E-opt: 0.2 (0.225), width: 16 Scan time: 6.310 The best scores are: opt bits E(85289) NP_001191742 (OMIM: 129190,211800) 5'-nucleotidase ( 524) 1650 405.7 8.6e-113 NP_002517 (OMIM: 129190,211800) 5'-nucleotidase is ( 574) 1650 405.8 9.3e-113 >>NP_001191742 (OMIM: 129190,211800) 5'-nucleotidase iso (524 aa) initn: 1650 init1: 1650 opt: 1650 Z-score: 2146.0 bits: 405.7 E(85289): 8.6e-113 Smith-Waterman score: 1650; 100.0% identity (100.0% similar) in 252 aa overlap (1-252:1-252) 10 20 30 40 50 60 pF1KE5 MCPRAARAPATLLLALGAVLWPAAGAWELTILHTNDVHSRLEQTSEDSSKCVNASRCMGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MCPRAARAPATLLLALGAVLWPAAGAWELTILHTNDVHSRLEQTSEDSSKCVNASRCMGG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 VARLFTKVQQIRRAEPNVLLLDAGDQYQGTIWFTVYKGAEVAHFMNALRYDAMALGNHEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VARLFTKVQQIRRAEPNVLLLDAGDQYQGTIWFTVYKGAEVAHFMNALRYDAMALGNHEF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 DNGVEGLIEPLLKEAKFPILSANIKAKGPLASQISGLYLPYKVLPVGDEVVGIVGYTSKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DNGVEGLIEPLLKEAKFPILSANIKAKGPLASQISGLYLPYKVLPVGDEVVGIVGYTSKE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 TPFLSNPGTNLVFEDEITALQPEVDKLKTLNVNKIIALGHSGFEMDKLIAQKVRGVDVVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TPFLSNPGTNLVFEDEITALQPEVDKLKTLNVNKIIALGHSGFEMDKLIAQKVRGVDVVV 190 200 210 220 230 240 250 260 pF1KE5 GGHSNTFLYTGNCFKRIAWARMSR :::::::::::: NP_001 GGHSNTFLYTGNPPSKEVPAGKYPFIVTSDDGRKVPVVQAYAFGKYLGYLKIEFDERGNV 250 260 270 280 290 300 >>NP_002517 (OMIM: 129190,211800) 5'-nucleotidase isofor (574 aa) initn: 1650 init1: 1650 opt: 1650 Z-score: 2145.4 bits: 405.8 E(85289): 9.3e-113 Smith-Waterman score: 1650; 100.0% identity (100.0% similar) in 252 aa overlap (1-252:1-252) 10 20 30 40 50 60 pF1KE5 MCPRAARAPATLLLALGAVLWPAAGAWELTILHTNDVHSRLEQTSEDSSKCVNASRCMGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MCPRAARAPATLLLALGAVLWPAAGAWELTILHTNDVHSRLEQTSEDSSKCVNASRCMGG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 VARLFTKVQQIRRAEPNVLLLDAGDQYQGTIWFTVYKGAEVAHFMNALRYDAMALGNHEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 VARLFTKVQQIRRAEPNVLLLDAGDQYQGTIWFTVYKGAEVAHFMNALRYDAMALGNHEF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 DNGVEGLIEPLLKEAKFPILSANIKAKGPLASQISGLYLPYKVLPVGDEVVGIVGYTSKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 DNGVEGLIEPLLKEAKFPILSANIKAKGPLASQISGLYLPYKVLPVGDEVVGIVGYTSKE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 TPFLSNPGTNLVFEDEITALQPEVDKLKTLNVNKIIALGHSGFEMDKLIAQKVRGVDVVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 TPFLSNPGTNLVFEDEITALQPEVDKLKTLNVNKIIALGHSGFEMDKLIAQKVRGVDVVV 190 200 210 220 230 240 250 260 pF1KE5 GGHSNTFLYTGNCFKRIAWARMSR :::::::::::: NP_002 GGHSNTFLYTGNPPSKEVPAGKYPFIVTSDDGRKVPVVQAYAFGKYLGYLKIEFDERGNV 250 260 270 280 290 300 264 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 23:55:25 2016 done: Mon Nov 7 23:55:26 2016 Total Scan time: 6.310 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]