FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5339, 264 aa 1>>>pF1KE5339 264 - 264 aa - 264 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4500+/-0.000899; mu= 13.3746+/- 0.054 mean_var=57.2601+/-11.586, 0's: 0 Z-trim(104.3): 11 B-trim: 386 in 1/49 Lambda= 0.169492 statistics sampled from 7849 (7851) to 7849 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.621), E-opt: 0.2 (0.241), width: 16 Scan time: 2.270 The best scores are: opt bits E(32554) CCDS56439.1 NT5E gene_id:4907|Hs108|chr6 ( 524) 1650 411.8 4.8e-115 CCDS5002.1 NT5E gene_id:4907|Hs108|chr6 ( 574) 1650 411.8 5.3e-115 >>CCDS56439.1 NT5E gene_id:4907|Hs108|chr6 (524 aa) initn: 1650 init1: 1650 opt: 1650 Z-score: 2178.8 bits: 411.8 E(32554): 4.8e-115 Smith-Waterman score: 1650; 100.0% identity (100.0% similar) in 252 aa overlap (1-252:1-252) 10 20 30 40 50 60 pF1KE5 MCPRAARAPATLLLALGAVLWPAAGAWELTILHTNDVHSRLEQTSEDSSKCVNASRCMGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 MCPRAARAPATLLLALGAVLWPAAGAWELTILHTNDVHSRLEQTSEDSSKCVNASRCMGG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 VARLFTKVQQIRRAEPNVLLLDAGDQYQGTIWFTVYKGAEVAHFMNALRYDAMALGNHEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 VARLFTKVQQIRRAEPNVLLLDAGDQYQGTIWFTVYKGAEVAHFMNALRYDAMALGNHEF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 DNGVEGLIEPLLKEAKFPILSANIKAKGPLASQISGLYLPYKVLPVGDEVVGIVGYTSKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 DNGVEGLIEPLLKEAKFPILSANIKAKGPLASQISGLYLPYKVLPVGDEVVGIVGYTSKE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 TPFLSNPGTNLVFEDEITALQPEVDKLKTLNVNKIIALGHSGFEMDKLIAQKVRGVDVVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 TPFLSNPGTNLVFEDEITALQPEVDKLKTLNVNKIIALGHSGFEMDKLIAQKVRGVDVVV 190 200 210 220 230 240 250 260 pF1KE5 GGHSNTFLYTGNCFKRIAWARMSR :::::::::::: CCDS56 GGHSNTFLYTGNPPSKEVPAGKYPFIVTSDDGRKVPVVQAYAFGKYLGYLKIEFDERGNV 250 260 270 280 290 300 >>CCDS5002.1 NT5E gene_id:4907|Hs108|chr6 (574 aa) initn: 1650 init1: 1650 opt: 1650 Z-score: 2178.2 bits: 411.8 E(32554): 5.3e-115 Smith-Waterman score: 1650; 100.0% identity (100.0% similar) in 252 aa overlap (1-252:1-252) 10 20 30 40 50 60 pF1KE5 MCPRAARAPATLLLALGAVLWPAAGAWELTILHTNDVHSRLEQTSEDSSKCVNASRCMGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS50 MCPRAARAPATLLLALGAVLWPAAGAWELTILHTNDVHSRLEQTSEDSSKCVNASRCMGG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 VARLFTKVQQIRRAEPNVLLLDAGDQYQGTIWFTVYKGAEVAHFMNALRYDAMALGNHEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS50 VARLFTKVQQIRRAEPNVLLLDAGDQYQGTIWFTVYKGAEVAHFMNALRYDAMALGNHEF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 DNGVEGLIEPLLKEAKFPILSANIKAKGPLASQISGLYLPYKVLPVGDEVVGIVGYTSKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS50 DNGVEGLIEPLLKEAKFPILSANIKAKGPLASQISGLYLPYKVLPVGDEVVGIVGYTSKE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 TPFLSNPGTNLVFEDEITALQPEVDKLKTLNVNKIIALGHSGFEMDKLIAQKVRGVDVVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS50 TPFLSNPGTNLVFEDEITALQPEVDKLKTLNVNKIIALGHSGFEMDKLIAQKVRGVDVVV 190 200 210 220 230 240 250 260 pF1KE5 GGHSNTFLYTGNCFKRIAWARMSR :::::::::::: CCDS50 GGHSNTFLYTGNPPSKEVPAGKYPFIVTSDDGRKVPVVQAYAFGKYLGYLKIEFDERGNV 250 260 270 280 290 300 264 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 23:55:24 2016 done: Mon Nov 7 23:55:25 2016 Total Scan time: 2.270 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]