FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2562, 265 aa 1>>>pF1KE2562 265 - 265 aa - 265 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.4870+/-0.000946; mu= 0.9986+/- 0.057 mean_var=205.6136+/-41.578, 0's: 0 Z-trim(112.8): 31 B-trim: 595 in 1/50 Lambda= 0.089443 statistics sampled from 13509 (13533) to 13509 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.745), E-opt: 0.2 (0.416), width: 16 Scan time: 1.450 The best scores are: opt bits E(32554) CCDS4377.1 NPM1 gene_id:4869|Hs108|chr5 ( 265) 1765 239.7 1.6e-63 CCDS43399.1 NPM1 gene_id:4869|Hs108|chr5 ( 259) 1312 181.3 6.1e-46 CCDS4376.1 NPM1 gene_id:4869|Hs108|chr5 ( 294) 1312 181.3 6.7e-46 >>CCDS4377.1 NPM1 gene_id:4869|Hs108|chr5 (265 aa) initn: 1765 init1: 1765 opt: 1765 Z-score: 1254.0 bits: 239.7 E(32554): 1.6e-63 Smith-Waterman score: 1765; 100.0% identity (100.0% similar) in 265 aa overlap (1-265:1-265) 10 20 30 40 50 60 pF1KE2 MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 EAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 EAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 EDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAADEDDDDDDEEDDDEDDDDDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 EDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAADEDDDDDDEEDDDEDDDDDD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 FDDEEAEEKAPVKKGQESFKKQEKTPKTPKGPSSVEDIKAKMQASIEKGGSLPKVEAKFI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 FDDEEAEEKAPVKKGQESFKKQEKTPKTPKGPSSVEDIKAKMQASIEKGGSLPKVEAKFI 190 200 210 220 230 240 250 260 pF1KE2 NYVKNCFRMTDQEAIQDLWQWRKSL ::::::::::::::::::::::::: CCDS43 NYVKNCFRMTDQEAIQDLWQWRKSL 250 260 >>CCDS43399.1 NPM1 gene_id:4869|Hs108|chr5 (259 aa) initn: 1287 init1: 1287 opt: 1312 Z-score: 938.2 bits: 181.3 E(32554): 6.1e-46 Smith-Waterman score: 1436; 88.7% identity (88.7% similar) in 257 aa overlap (1-228:1-257) 10 20 30 40 50 60 pF1KE2 MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 EAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 EAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 EDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAADEDDDDDDEEDDDEDDDDDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 EDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAADEDDDDDDEEDDDEDDDDDD 130 140 150 160 170 180 190 200 210 pF1KE2 FDDEEAEEKAPVKK-----------------------------GQESFKKQEKTPKTPKG :::::::::::::: ::::::::::::::::: CCDS43 FDDEEAEEKAPVKKSIRDTPAKNAQKSNQNGKDSKPSSTPRSKGQESFKKQEKTPKTPKG 190 200 210 220 230 240 220 230 240 250 260 pF1KE2 PSSVEDIKAKMQASIEKGGSLPKVEAKFINYVKNCFRMTDQEAIQDLWQWRKSL ::::::::::::::::: CCDS43 PSSVEDIKAKMQASIEKAH 250 >>CCDS4376.1 NPM1 gene_id:4869|Hs108|chr5 (294 aa) initn: 1287 init1: 1287 opt: 1312 Z-score: 937.5 bits: 181.3 E(32554): 6.7e-46 Smith-Waterman score: 1697; 90.1% identity (90.1% similar) in 294 aa overlap (1-265:1-294) 10 20 30 40 50 60 pF1KE2 MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 EAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 EAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 EDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAADEDDDDDDEEDDDEDDDDDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 EDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAADEDDDDDDEEDDDEDDDDDD 130 140 150 160 170 180 190 200 210 pF1KE2 FDDEEAEEKAPVKK-----------------------------GQESFKKQEKTPKTPKG :::::::::::::: ::::::::::::::::: CCDS43 FDDEEAEEKAPVKKSIRDTPAKNAQKSNQNGKDSKPSSTPRSKGQESFKKQEKTPKTPKG 190 200 210 220 230 240 220 230 240 250 260 pF1KE2 PSSVEDIKAKMQASIEKGGSLPKVEAKFINYVKNCFRMTDQEAIQDLWQWRKSL :::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS43 PSSVEDIKAKMQASIEKGGSLPKVEAKFINYVKNCFRMTDQEAIQDLWQWRKSL 250 260 270 280 290 265 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 10:58:27 2016 done: Tue Nov 8 10:58:27 2016 Total Scan time: 1.450 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]