FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2568, 265 aa 1>>>pF1KE2568 265 - 265 aa - 265 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6636+/-0.000815; mu= 12.7272+/- 0.049 mean_var=69.3465+/-13.807, 0's: 0 Z-trim(107.3): 16 B-trim: 0 in 0/49 Lambda= 0.154015 statistics sampled from 9455 (9465) to 9455 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.673), E-opt: 0.2 (0.291), width: 16 Scan time: 1.930 The best scores are: opt bits E(32554) CCDS7473.1 LOXL4 gene_id:84171|Hs108|chr10 ( 756) 1926 437.0 1.8e-122 CCDS74527.1 LOXL3 gene_id:84695|Hs108|chr2 ( 608) 1360 311.2 1.1e-84 CCDS1953.1 LOXL3 gene_id:84695|Hs108|chr2 ( 753) 1360 311.2 1.3e-84 CCDS34864.1 LOXL2 gene_id:4017|Hs108|chr8 ( 774) 1320 302.4 6.4e-82 CCDS4129.1 LOX gene_id:4015|Hs108|chr5 ( 417) 765 178.9 4.9e-45 CCDS10253.1 LOXL1 gene_id:4016|Hs108|chr15 ( 574) 729 171.0 1.7e-42 >>CCDS7473.1 LOXL4 gene_id:84171|Hs108|chr10 (756 aa) initn: 1926 init1: 1926 opt: 1926 Z-score: 2312.1 bits: 437.0 E(32554): 1.8e-122 Smith-Waterman score: 1926; 100.0% identity (100.0% similar) in 265 aa overlap (1-265:492-756) 10 20 30 pF1KE2 MSGVRCSGTELALQQCQRHGPVHCSHGGGR :::::::::::::::::::::::::::::: CCDS74 ACRQLGLGFAIHAYKETWFWSGTPRAQEVVMSGVRCSGTELALQQCQRHGPVHCSHGGGR 470 480 490 500 510 520 40 50 60 70 80 90 pF1KE2 FLAGVSCMDSAPDLVMNAQLVQETAYLEDRPLSQLYCAHEENCLSKSADHMDWPYGYRRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 FLAGVSCMDSAPDLVMNAQLVQETAYLEDRPLSQLYCAHEENCLSKSADHMDWPYGYRRL 530 540 550 560 570 580 100 110 120 130 140 150 pF1KE2 LRFSTQIYNLGRTDFRPKTGRDSWVWHQCHRHYHSIEVFTHYDLLTLNGSKVAEGHKASF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 LRFSTQIYNLGRTDFRPKTGRDSWVWHQCHRHYHSIEVFTHYDLLTLNGSKVAEGHKASF 590 600 610 620 630 640 160 170 180 190 200 210 pF1KE2 CLEDTNCPTGLQRRYACANFGEQGVTVGCWDTYRHDIDCQWVDITDVGPGNYIFQVIVNP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 CLEDTNCPTGLQRRYACANFGEQGVTVGCWDTYRHDIDCQWVDITDVGPGNYIFQVIVNP 650 660 670 680 690 700 220 230 240 250 260 pF1KE2 HYEVAESDFSNNMLQCRCKYDGHRVWLHNCHTGNSYPANAELSLEQEQRLRNNLI ::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 HYEVAESDFSNNMLQCRCKYDGHRVWLHNCHTGNSYPANAELSLEQEQRLRNNLI 710 720 730 740 750 >>CCDS74527.1 LOXL3 gene_id:84695|Hs108|chr2 (608 aa) initn: 1338 init1: 1238 opt: 1360 Z-score: 1633.9 bits: 311.2 E(32554): 1.1e-84 Smith-Waterman score: 1360; 65.8% identity (85.7% similar) in 266 aa overlap (1-265:342-607) 10 20 pF1KE2 MSGVRCSGTELALQQCQRHGP-VHCSHGGG ::::::.::::.:.:: .:: . :.. : CCDS74 VACRQLGLGYANHGLQETWYWDSGNITEVVMSGVRCTGTELSLDQCAHHGTHITCKRTGT 320 330 340 350 360 370 30 40 50 60 70 80 pF1KE2 RFLAGVSCMDSAPDLVMNAQLVQETAYLEDRPLSQLYCAHEENCLSKSADHMDWPYGYRR :: ::: : ..: ::.... :::::::.::::: .:::: :::::..:: .::::.:: CCDS74 RFTAGVICSETASDLLLHSALVQETAYIEDRPLHMLYCAAEENCLASSARSANWPYGHRR 380 390 400 410 420 430 90 100 110 120 130 140 pF1KE2 LLRFSTQIYNLGRTDFRPKTGRDSWVWHQCHRHYHSIEVFTHYDLLTLNGSKVAEGHKAS :::::.::.::::.:::::.:: :::::.:: ::::...:::::.:: ::.::::::::: CCDS74 LLRFSSQIHNLGRADFRPKAGRHSWVWHECHGHYHSMDIFTHYDILTPNGTKVAEGHKAS 440 450 460 470 480 490 150 160 170 180 190 200 pF1KE2 FCLEDTNCPTGLQRRYACANFGEQGVTVGCWDTYRHDIDCQWVDITDVGPGNYIFQVIVN ::::::.: ...:: ::::::::.:::::: :::::::::.::::: :::::.::..: CCDS74 FCLEDTECQEDVSKRYECANFGEQGITVGCWDLYRHDIDCQWIDITDVKPGNYILQVVIN 500 510 520 530 540 550 210 220 230 240 250 260 pF1KE2 PHYEVAESDFSNNMLQCRCKYDGHRVWLHNCHTGNSYPANAELSLEQEQRLRNNLI :..:::::::.:: ..: :::::::.:.:::: :... .:. .:. .: : CCDS74 PNFEVAESDFTNNAMKCNCKYDGHRIWVHNCHIGDAFSEEANRRFERYPGQTSNQII 560 570 580 590 600 >>CCDS1953.1 LOXL3 gene_id:84695|Hs108|chr2 (753 aa) initn: 1374 init1: 1238 opt: 1360 Z-score: 1632.5 bits: 311.2 E(32554): 1.3e-84 Smith-Waterman score: 1360; 65.8% identity (85.7% similar) in 266 aa overlap (1-265:487-752) 10 20 pF1KE2 MSGVRCSGTELALQQCQRHGP-VHCSHGGG ::::::.::::.:.:: .:: . :.. : CCDS19 VACRQLGLGYANHGLQETWYWDSGNITEVVMSGVRCTGTELSLDQCAHHGTHITCKRTGT 460 470 480 490 500 510 30 40 50 60 70 80 pF1KE2 RFLAGVSCMDSAPDLVMNAQLVQETAYLEDRPLSQLYCAHEENCLSKSADHMDWPYGYRR :: ::: : ..: ::.... :::::::.::::: .:::: :::::..:: .::::.:: CCDS19 RFTAGVICSETASDLLLHSALVQETAYIEDRPLHMLYCAAEENCLASSARSANWPYGHRR 520 530 540 550 560 570 90 100 110 120 130 140 pF1KE2 LLRFSTQIYNLGRTDFRPKTGRDSWVWHQCHRHYHSIEVFTHYDLLTLNGSKVAEGHKAS :::::.::.::::.:::::.:: :::::.:: ::::...:::::.:: ::.::::::::: CCDS19 LLRFSSQIHNLGRADFRPKAGRHSWVWHECHGHYHSMDIFTHYDILTPNGTKVAEGHKAS 580 590 600 610 620 630 150 160 170 180 190 200 pF1KE2 FCLEDTNCPTGLQRRYACANFGEQGVTVGCWDTYRHDIDCQWVDITDVGPGNYIFQVIVN ::::::.: ...:: ::::::::.:::::: :::::::::.::::: :::::.::..: CCDS19 FCLEDTECQEDVSKRYECANFGEQGITVGCWDLYRHDIDCQWIDITDVKPGNYILQVVIN 640 650 660 670 680 690 210 220 230 240 250 260 pF1KE2 PHYEVAESDFSNNMLQCRCKYDGHRVWLHNCHTGNSYPANAELSLEQEQRLRNNLI :..:::::::.:: ..: :::::::.:.:::: :... .:. .:. .: : CCDS19 PNFEVAESDFTNNAMKCNCKYDGHRIWVHNCHIGDAFSEEANRRFERYPGQTSNQII 700 710 720 730 740 750 >>CCDS34864.1 LOXL2 gene_id:4017|Hs108|chr8 (774 aa) initn: 1269 init1: 1236 opt: 1320 Z-score: 1584.2 bits: 302.4 E(32554): 6.4e-82 Smith-Waterman score: 1320; 64.8% identity (86.7% similar) in 264 aa overlap (1-263:506-769) 10 20 pF1KE2 MSGVRCSGTELALQQCQRHGP-VHCSHGGG ::::.::::::.: .:.. : : : .:: CCDS34 VCRQLGLGFASNAFQETWYWHGDVNSNKVVMSGVKCSGTELSLAHCRHDGEDVACPQGGV 480 490 500 510 520 530 30 40 50 60 70 80 pF1KE2 RFLAGVSCMDSAPDLVMNAQLVQETAYLEDRPLSQLYCAHEENCLSKSADHMDWPYGYRR .. :::.: ..:::::.::..::.:.::::::. .: :: :::::: :: . : :::: CCDS34 QYGAGVACSETAPDLVLNAEMVQQTTYLEDRPMFMLQCAMEENCLSASAAQTDPTTGYRR 540 550 560 570 580 590 90 100 110 120 130 140 pF1KE2 LLRFSTQIYNLGRTDFRPKTGRDSWVWHQCHRHYHSIEVFTHYDLLTLNGSKVAEGHKAS :::::.::.: :..:::::.:: .:.::.:::::::.:::::::::.:::.::::::::: CCDS34 LLRFSSQIHNNGQSDFRPKNGRHAWIWHDCHRHYHSMEVFTHYDLLNLNGTKVAEGHKAS 600 610 620 630 640 650 150 160 170 180 190 200 pF1KE2 FCLEDTNCPTGLQRRYACANFGEQGVTVGCWDTYRHDIDCQWVDITDVGPGNYIFQVIVN ::::::.: .:. : :::::.::.:.:::: ::::::::::::::: ::.:.:::..: CCDS34 FCLEDTECEGDIQKNYECANFGDQGITMGCWDMYRHDIDCQWVDITDVPPGDYLFQVVIN 660 670 680 690 700 710 210 220 230 240 250 260 pF1KE2 PHYEVAESDFSNNMLQCRCKYDGHRVWLHNCHTGNSYPANAELSLEQEQRLRNNLI :..::::::.:::...:: .:::::.:..::: :.:. ..: ..:. . : :: CCDS34 PNFEVAESDYSNNIMKCRSRYDGHRIWMYNCHIGGSFSEETEKKFEHFSGLLNNQLSPQ 720 730 740 750 760 770 >>CCDS4129.1 LOX gene_id:4015|Hs108|chr5 (417 aa) initn: 725 init1: 485 opt: 765 Z-score: 922.0 bits: 178.9 E(32554): 4.9e-45 Smith-Waterman score: 765; 49.5% identity (71.6% similar) in 218 aa overlap (28-240:196-412) 10 20 30 40 50 pF1KE2 MSGVRCSGTELALQQCQRHGPVHCSHGGGRFLAGVSC---MDSAPDLVMNAQLVQET :::. : . . . :::: . .: . CCDS41 MVGDDPYNPYKYSDDNPYYNYYDTYERPRPGGRYRPGYGTGYFQYGLPDLVADPYYIQAS 170 180 190 200 210 220 60 70 80 90 100 110 pF1KE2 AYLEDRPLSQLYCAHEENCLSKSADHMDW-PYGYRRLLRFSTQIYNLGRTDFRPKTGRDS .:.. . .: :: :::::...: . : : .: :::: .. : : .:: :. : : CCDS41 TYVQKMSMYNLRCAAEENCLASTAYRADVRDYDHRVLLRFPQRVKNQGTSDFLPSRPRYS 230 240 250 260 270 280 120 130 140 150 160 170 pF1KE2 WVWHQCHRHYHSIEVFTHYDLLTLNGSK-VAEGHKASFCLEDTNCPTGLQRRYACANFGE : ::.::.::::.. :.::::: : .. ::::::::::::::.: : .::.::. CCDS41 WEWHSCHQHYHSMDEFSHYDLLDANTQRRVAEGHKASFCLEDTSCDYGYHRRFACTAH-T 290 300 310 320 330 340 180 190 200 210 220 230 pF1KE2 QGVTVGCWDTYRHDIDCQWVDITDVGPGNYIFQVIVNPHYEVAESDFSNNMLQCRCKYDG ::.. ::.::: ::::::.::::: :::::..: ::: : : :::..::...: .: : CCDS41 QGLSPGCYDTYGADIDCQWIDITDVKPGNYILKVSVNPSYLVPESDYTNNVVRCDIRYTG 350 360 370 380 390 400 240 250 260 pF1KE2 HRVWLHNCHTGNSYPANAELSLEQEQRLRNNLI :... .: CCDS41 HHAYASGCTISPY 410 >>CCDS10253.1 LOXL1 gene_id:4016|Hs108|chr15 (574 aa) initn: 568 init1: 478 opt: 729 Z-score: 876.6 bits: 171.0 E(32554): 1.7e-42 Smith-Waterman score: 729; 52.2% identity (73.6% similar) in 201 aa overlap (42-240:370-569) 20 30 40 50 60 70 pF1KE2 ALQQCQRHGPVHCSHGGGRFLAGVSCMDSAPDLVMNAQLVQETAYLEDRPLSQLYCAHEE :::: . . :: ..:.. : .: :: :: CCDS10 PPPGGERNGAQQGRLSVGSVYRPNQNGRGLPDLVPDPNYVQASTYVQRAHLYSLRCAAEE 340 350 360 370 380 390 80 90 100 110 120 130 pF1KE2 NCLSKSADHMDWP-YGYRRLLRFSTQIYNLGRTDFRPKTGRDSWVWHQCHRHYHSIEVFT .::...: . : : :::: .. : : .:: :. : .: ::.::.::::.. :. CCDS10 KCLASTAYAPEATDYDVRVLLRFPQRVKNQGTADFLPNRPRHTWEWHSCHQHYHSMDEFS 400 410 420 430 440 450 140 150 160 170 180 pF1KE2 HYDLL-TLNGSKVAEGHKASFCLEDTNCPTGLQRRYACANFGEQGVTVGCWDTYRHDIDC ::::: . .:.::::::::::::::..: : .::::.. ::.. ::.::: :::: CCDS10 HYDLLDAATGKKVAEGHKASFCLEDSTCDFGNLKRYACTSH-TQGLSPGCYDTYNADIDC 460 470 480 490 500 510 190 200 210 220 230 240 pF1KE2 QWVDITDVGPGNYIFQVIVNPHYEVAESDFSNNMLQCRCKYDGHRVWLHNCHTGNSYPAN ::.::::: :::::..: :::.: : ::::.::...: .: :. : :: CCDS10 QWIDITDVQPGNYILKVHVNPKYIVLESDFTNNVVRCNIHYTGRYVSATNCKIVQS 520 530 540 550 560 570 250 260 pF1KE2 AELSLEQEQRLRNNLI 265 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 16:25:19 2016 done: Tue Nov 8 16:25:19 2016 Total Scan time: 1.930 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]