FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6536, 71 aa 1>>>pF1KE6536 71 - 71 aa - 71 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.2542+/-0.000322; mu= 11.7563+/- 0.020 mean_var=42.8003+/- 9.060, 0's: 0 Z-trim(115.2): 5 B-trim: 1323 in 2/49 Lambda= 0.196043 statistics sampled from 25570 (25574) to 25570 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.3), width: 16 Scan time: 2.580 The best scores are: opt bits E(85289) XP_006719656 (OMIM: 252500,252600,607840) PREDICTE (1179) 460 137.2 3.6e-32 NP_077288 (OMIM: 252500,252600,607840) N-acetylglu (1256) 460 137.2 3.8e-32 XP_011537033 (OMIM: 252500,252600,607840) PREDICTE (1229) 200 63.7 5.1e-10 >>XP_006719656 (OMIM: 252500,252600,607840) PREDICTED: N (1179 aa) initn: 460 init1: 460 opt: 460 Z-score: 698.6 bits: 137.2 E(85289): 3.6e-32 Smith-Waterman score: 460; 100.0% identity (100.0% similar) in 68 aa overlap (1-68:1-68) 10 20 30 40 50 60 pF1KE6 MLFKLLQRQTYTCLSHRYGLYVCFLGVVVTIVSAFQFGEVVLEWSRDQYHVLFDSYRDNI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 MLFKLLQRQTYTCLSHRYGLYVCFLGVVVTIVSAFQFGEVVLEWSRDQYHVLFDSYRDNI 10 20 30 40 50 60 70 pF1KE6 AGKSFQNRSVR :::::::: XP_006 AGKSFQNRLCLPMPIDVVYTWVNGTDLELLKELQQVREQMEEEQKAMREILGKNTTEPTK 70 80 90 100 110 120 >>NP_077288 (OMIM: 252500,252600,607840) N-acetylglucosa (1256 aa) initn: 460 init1: 460 opt: 460 Z-score: 698.1 bits: 137.2 E(85289): 3.8e-32 Smith-Waterman score: 460; 100.0% identity (100.0% similar) in 68 aa overlap (1-68:1-68) 10 20 30 40 50 60 pF1KE6 MLFKLLQRQTYTCLSHRYGLYVCFLGVVVTIVSAFQFGEVVLEWSRDQYHVLFDSYRDNI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_077 MLFKLLQRQTYTCLSHRYGLYVCFLGVVVTIVSAFQFGEVVLEWSRDQYHVLFDSYRDNI 10 20 30 40 50 60 70 pF1KE6 AGKSFQNRSVR :::::::: NP_077 AGKSFQNRLCLPMPIDVVYTWVNGTDLELLKELQQVREQMEEEQKAMREILGKNTTEPTK 70 80 90 100 110 120 >>XP_011537033 (OMIM: 252500,252600,607840) PREDICTED: N (1229 aa) initn: 200 init1: 200 opt: 200 Z-score: 300.9 bits: 63.7 E(85289): 5.1e-10 Smith-Waterman score: 200; 100.0% identity (100.0% similar) in 29 aa overlap (40-68:13-41) 10 20 30 40 50 60 pF1KE6 TYTCLSHRYGLYVCFLGVVVTIVSAFQFGEVVLEWSRDQYHVLFDSYRDNIAGKSFQNRS ::::::::::::::::::::::::::::: XP_011 MASNHHCRPQSMVVLEWSRDQYHVLFDSYRDNIAGKSFQNRL 10 20 30 40 70 pF1KE6 VR XP_011 CLPMPIDVVYTWVNGTDLELLKELQQVREQMEEEQKAMREILGKNTTEPTKKSEKQLECL 50 60 70 80 90 100 71 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:12:28 2016 done: Tue Nov 8 14:12:29 2016 Total Scan time: 2.580 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]