FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5675, 558 aa 1>>>pF1KE5675 558 - 558 aa - 558 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.5173+/-0.000419; mu= 15.3624+/- 0.026 mean_var=163.6379+/-34.983, 0's: 0 Z-trim(116.6): 91 B-trim: 1375 in 2/56 Lambda= 0.100261 statistics sampled from 27717 (27820) to 27717 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.688), E-opt: 0.2 (0.326), width: 16 Scan time: 9.050 The best scores are: opt bits E(85289) NP_001231827 (OMIM: 607527) polypyrimidine tract-b ( 558) 3650 540.5 5.3e-153 XP_011517567 (OMIM: 607527) PREDICTED: polypyrimid ( 561) 3634 538.2 2.7e-152 NP_005147 (OMIM: 607527) polypyrimidine tract-bind ( 552) 3523 522.1 1.8e-147 NP_001157262 (OMIM: 607527) polypyrimidine tract-b ( 555) 3507 519.8 8.9e-147 XP_006717409 (OMIM: 607527) PREDICTED: polypyrimid ( 521) 3410 505.7 1.4e-142 NP_001157260 (OMIM: 607527) polypyrimidine tract-b ( 524) 3394 503.4 7.2e-142 NP_001231826 (OMIM: 607527) polypyrimidine tract-b ( 547) 3128 465.0 2.8e-130 NP_001231825 (OMIM: 607527) polypyrimidine tract-b ( 457) 2976 442.9 1e-123 XP_016870854 (OMIM: 607527) PREDICTED: polypyrimid ( 452) 2952 439.4 1.1e-122 NP_002810 (OMIM: 600693) polypyrimidine tract-bind ( 557) 2736 408.3 3.3e-113 XP_005259654 (OMIM: 600693) PREDICTED: polypyrimid ( 559) 2736 408.3 3.3e-113 NP_114367 (OMIM: 600693) polypyrimidine tract-bind ( 550) 2681 400.3 8.2e-111 NP_114368 (OMIM: 600693) polypyrimidine tract-bind ( 531) 1203 186.5 1.8e-46 XP_005259655 (OMIM: 600693) PREDICTED: polypyrimid ( 533) 1203 186.5 1.8e-46 NP_001287914 (OMIM: 608449) polypyrimidine tract-b ( 537) 1154 179.4 2.5e-44 XP_011540178 (OMIM: 608449) PREDICTED: polypyrimid ( 545) 1154 179.4 2.5e-44 XP_016857440 (OMIM: 608449) PREDICTED: polypyrimid ( 548) 1154 179.4 2.5e-44 NP_001287916 (OMIM: 608449) polypyrimidine tract-b ( 548) 1154 179.4 2.5e-44 NP_001287919 (OMIM: 608449) polypyrimidine tract-b ( 480) 1142 177.6 7.7e-44 NP_001287918 (OMIM: 608449) polypyrimidine tract-b ( 532) 1142 177.7 8.3e-44 NP_001287915 (OMIM: 608449) polypyrimidine tract-b ( 540) 1142 177.7 8.4e-44 NP_001287917 (OMIM: 608449) polypyrimidine tract-b ( 536) 1139 177.2 1.1e-43 XP_011540176 (OMIM: 608449) PREDICTED: polypyrimid ( 544) 1139 177.3 1.1e-43 NP_067013 (OMIM: 608449) polypyrimidine tract-bind ( 531) 1127 175.5 3.7e-43 XP_011540177 (OMIM: 608449) PREDICTED: polypyrimid ( 539) 1127 175.5 3.8e-43 XP_011525190 (OMIM: 603083) PREDICTED: heterogeneo ( 528) 275 52.3 4.6e-06 XP_011531467 (OMIM: 611208) PREDICTED: heterogeneo ( 571) 270 51.6 8.1e-06 NP_001136122 (OMIM: 611208) heterogeneous nuclear ( 537) 258 49.8 2.6e-05 NP_612403 (OMIM: 611208) heterogeneous nuclear rib ( 542) 258 49.8 2.6e-05 XP_011531468 (OMIM: 611208) PREDICTED: heterogeneo ( 570) 258 49.8 2.7e-05 XP_005264697 (OMIM: 611208) PREDICTED: heterogeneo ( 590) 258 49.9 2.7e-05 XP_005264696 (OMIM: 611208) PREDICTED: heterogeneo ( 595) 258 49.9 2.8e-05 NP_001005335 (OMIM: 603083) heterogeneous nuclear ( 456) 247 48.1 7e-05 XP_011525191 (OMIM: 603083) PREDICTED: heterogeneo ( 456) 247 48.1 7e-05 XP_011525188 (OMIM: 603083) PREDICTED: heterogeneo ( 518) 247 48.2 7.6e-05 XP_011525189 (OMIM: 603083) PREDICTED: heterogeneo ( 532) 247 48.2 7.7e-05 NP_001524 (OMIM: 603083) heterogeneous nuclear rib ( 589) 247 48.3 8.3e-05 XP_011537999 (OMIM: 613171,613172) PREDICTED: RNA- (1099) 220 44.7 0.0019 XP_016871593 (OMIM: 613171,613172) PREDICTED: RNA- (1099) 220 44.7 0.0019 XP_016871592 (OMIM: 613171,613172) PREDICTED: RNA- (1172) 220 44.7 0.0019 NP_001127835 (OMIM: 613171,613172) RNA-binding pro (1227) 220 44.7 0.002 >>NP_001231827 (OMIM: 607527) polypyrimidine tract-bindi (558 aa) initn: 3650 init1: 3650 opt: 3650 Z-score: 2867.8 bits: 540.5 E(85289): 5.3e-153 Smith-Waterman score: 3650; 100.0% identity (100.0% similar) in 558 aa overlap (1-558:1-558) 10 20 30 40 50 60 pF1KE5 MDASPSPFSLPKKLNELSARRGSDELLSSGIINGPFTMNSSTPSTANGNDSKKFKRDRPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MDASPSPFSLPKKLNELSARRGSDELLSSGIINGPFTMNSSTPSTANGNDSKKFKRDRPP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 CSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 CSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYY 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 TPITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TPITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 LPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHY 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 AKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAA 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 FGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGI 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 PGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNH 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE5 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPS 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE5 ATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHN 490 500 510 520 530 540 550 pF1KE5 HDLGENHHLRVSFSKSTI :::::::::::::::::: NP_001 HDLGENHHLRVSFSKSTI 550 >>XP_011517567 (OMIM: 607527) PREDICTED: polypyrimidine (561 aa) initn: 3365 init1: 3365 opt: 3634 Z-score: 2855.3 bits: 538.2 E(85289): 2.7e-152 Smith-Waterman score: 3634; 99.5% identity (99.5% similar) in 561 aa overlap (1-558:1-561) 10 20 30 40 50 pF1KE5 MDASPSPFSLPKKLNELSARRGSDELLSSGIINGPFTMNSSTPST---ANGNDSKKFKRD ::::::::::::::::::::::::::::::::::::::::::::: :::::::::::: XP_011 MDASPSPFSLPKKLNELSARRGSDELLSSGIINGPFTMNSSTPSTGVYANGNDSKKFKRD 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE5 RPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 RPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMV 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE5 NYYTPITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NYYTPITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNE 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE5 GTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVN 190 200 210 220 230 240 240 250 260 270 280 290 pF1KE5 AHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 AHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPM 250 260 270 280 290 300 300 310 320 330 340 350 pF1KE5 AAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 AAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGA 310 320 330 340 350 360 360 370 380 390 400 410 pF1KE5 SGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLA 370 380 390 400 410 420 420 430 440 450 460 470 pF1KE5 MNHLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MNHLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIF 430 440 450 460 470 480 480 490 500 510 520 530 pF1KE5 PPSATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PPSATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIE 490 500 510 520 530 540 540 550 pF1KE5 LHNHDLGENHHLRVSFSKSTI ::::::::::::::::::::: XP_011 LHNHDLGENHHLRVSFSKSTI 550 560 >>NP_005147 (OMIM: 607527) polypyrimidine tract-binding (552 aa) initn: 3523 init1: 3523 opt: 3523 Z-score: 2768.6 bits: 522.1 E(85289): 1.8e-147 Smith-Waterman score: 3523; 99.8% identity (100.0% similar) in 539 aa overlap (20-558:14-552) 10 20 30 40 50 60 pF1KE5 MDASPSPFSLPKKLNELSARRGSDELLSSGIINGPFTMNSSTPSTANGNDSKKFKRDRPP .:::::::::::::::::::::::::::::::::::::::: NP_005 MDGVVTDLITVGLKRGSDELLSSGIINGPFTMNSSTPSTANGNDSKKFKRDRPP 10 20 30 40 50 70 80 90 100 110 120 pF1KE5 CSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 CSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYY 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE5 TPITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 TPITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTV 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE5 LPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 LPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHY 180 190 200 210 220 230 250 260 270 280 290 300 pF1KE5 AKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 AKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAA 240 250 260 270 280 290 310 320 330 340 350 360 pF1KE5 FGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 FGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGI 300 310 320 330 340 350 370 380 390 400 410 420 pF1KE5 PGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 PGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNH 360 370 380 390 400 410 430 440 450 460 470 480 pF1KE5 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 LSGQRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPS 420 430 440 450 460 470 490 500 510 520 530 540 pF1KE5 ATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 ATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHN 480 490 500 510 520 530 550 pF1KE5 HDLGENHHLRVSFSKSTI :::::::::::::::::: NP_005 HDLGENHHLRVSFSKSTI 540 550 >>NP_001157262 (OMIM: 607527) polypyrimidine tract-bindi (555 aa) initn: 3365 init1: 3365 opt: 3507 Z-score: 2756.1 bits: 519.8 E(85289): 8.9e-147 Smith-Waterman score: 3507; 99.3% identity (99.4% similar) in 542 aa overlap (20-558:14-555) 10 20 30 40 50 pF1KE5 MDASPSPFSLPKKLNELSARRGSDELLSSGIINGPFTMNSSTPST---ANGNDSKKFKRD .::::::::::::::::::::::::: :::::::::::: NP_001 MDGVVTDLITVGLKRGSDELLSSGIINGPFTMNSSTPSTGVYANGNDSKKFKRD 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 RPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMV 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE5 NYYTPITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NYYTPITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNE 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE5 GTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVN 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE5 AHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPM 240 250 260 270 280 290 300 310 320 330 340 350 pF1KE5 AAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGA 300 310 320 330 340 350 360 370 380 390 400 410 pF1KE5 SGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLA 360 370 380 390 400 410 420 430 440 450 460 470 pF1KE5 MNHLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MNHLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIF 420 430 440 450 460 470 480 490 500 510 520 530 pF1KE5 PPSATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PPSATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIE 480 490 500 510 520 530 540 550 pF1KE5 LHNHDLGENHHLRVSFSKSTI ::::::::::::::::::::: NP_001 LHNHDLGENHHLRVSFSKSTI 540 550 >>XP_006717409 (OMIM: 607527) PREDICTED: polypyrimidine (521 aa) initn: 3410 init1: 3410 opt: 3410 Z-score: 2680.6 bits: 505.7 E(85289): 1.4e-142 Smith-Waterman score: 3410; 100.0% identity (100.0% similar) in 521 aa overlap (38-558:1-521) 10 20 30 40 50 60 pF1KE5 FSLPKKLNELSARRGSDELLSSGIINGPFTMNSSTPSTANGNDSKKFKRDRPPCSPSRVL :::::::::::::::::::::::::::::: XP_006 MNSSTPSTANGNDSKKFKRDRPPCSPSRVL 10 20 30 70 80 90 100 110 120 pF1KE5 HLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTPITPHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 HLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTPITPHL 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE5 RSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVLPGQSPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 RSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVLPGQSPV 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE5 LRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMALDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 LRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMALDG 160 170 180 190 200 210 250 260 270 280 290 300 pF1KE5 QNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGII :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 QNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGII 220 230 240 250 260 270 310 320 330 340 350 360 pF1KE5 SSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGIPGNSVLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 SSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGIPGNSVLL 280 290 300 310 320 330 370 380 390 400 410 420 pF1KE5 VTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 VTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLY 340 350 360 370 380 390 430 440 450 460 470 480 pF1KE5 GKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 GKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSN 400 410 420 430 440 450 490 500 510 520 530 540 pF1KE5 IPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 IPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENH 460 470 480 490 500 510 550 pF1KE5 HLRVSFSKSTI ::::::::::: XP_006 HLRVSFSKSTI 520 >>NP_001157260 (OMIM: 607527) polypyrimidine tract-bindi (524 aa) initn: 3365 init1: 3365 opt: 3394 Z-score: 2668.0 bits: 503.4 E(85289): 7.2e-142 Smith-Waterman score: 3394; 99.4% identity (99.4% similar) in 524 aa overlap (38-558:1-524) 10 20 30 40 50 60 pF1KE5 FSLPKKLNELSARRGSDELLSSGIINGPFTMNSSTPST---ANGNDSKKFKRDRPPCSPS :::::::: ::::::::::::::::::: NP_001 MNSSTPSTGVYANGNDSKKFKRDRPPCSPS 10 20 30 70 80 90 100 110 120 pF1KE5 RVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTPIT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTPIT 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE5 PHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVLPGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVLPGQ 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE5 SPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMA 160 170 180 190 200 210 250 260 270 280 290 300 pF1KE5 LDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAFGAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAFGAP 220 230 240 250 260 270 310 320 330 340 350 360 pF1KE5 GIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGIPGNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGIPGNS 280 290 300 310 320 330 370 380 390 400 410 420 pF1KE5 VLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQ 340 350 360 370 380 390 430 440 450 460 470 480 pF1KE5 RLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLH 400 410 420 430 440 450 490 500 510 520 530 540 pF1KE5 LSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLG 460 470 480 490 500 510 550 pF1KE5 ENHHLRVSFSKSTI :::::::::::::: NP_001 ENHHLRVSFSKSTI 520 >>NP_001231826 (OMIM: 607527) polypyrimidine tract-bindi (547 aa) initn: 3094 init1: 3094 opt: 3128 Z-score: 2459.9 bits: 465.0 E(85289): 2.8e-130 Smith-Waterman score: 3128; 93.5% identity (94.9% similar) in 525 aa overlap (38-556:1-518) 10 20 30 40 50 60 pF1KE5 FSLPKKLNELSARRGSDELLSSGIINGPFTMNSSTPST---ANGNDSKKFKRDRPPCSPS :::::::: ::::::::::::::::::: NP_001 MNSSTPSTGVYANGNDSKKFKRDRPPCSPS 10 20 30 70 80 90 100 110 120 pF1KE5 RVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTPIT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTPIT 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE5 PHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVLPGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVLPGQ 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE5 SPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMA 160 170 180 190 200 210 250 260 270 280 290 300 pF1KE5 LDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAFGAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAFGAP 220 230 240 250 260 270 310 320 330 340 350 360 pF1KE5 GIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGIPGNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGIPGNS 280 290 300 310 320 330 370 380 390 400 410 420 pF1KE5 VLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQ 340 350 360 370 380 390 430 440 450 460 470 480 pF1KE5 RLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLH 400 410 420 430 440 450 490 500 510 520 530 540 pF1KE5 LSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDL- ::::::::::::::::::::::::::::::: .: .: ..: : :. . NP_001 LSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQ---GLA----NSWAQVILLLPPPHSAGIT 460 470 480 490 500 550 pF1KE5 GENHH--LRVSFSKSTI : .:: : : :: : NP_001 GMSHHAWLSVLFSVSVPSVSSAYMFSILSCSFSSVPTRYFWTKN 510 520 530 540 >>NP_001231825 (OMIM: 607527) polypyrimidine tract-bindi (457 aa) initn: 2976 init1: 2976 opt: 2976 Z-score: 2342.0 bits: 442.9 E(85289): 1e-123 Smith-Waterman score: 2976; 100.0% identity (100.0% similar) in 456 aa overlap (103-558:2-457) 80 90 100 110 120 130 pF1KE5 PCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTPITPHLRSQPV :::::::::::::::::::::::::::::: NP_001 MAFLEMASEEAAVTMVNYYTPITPHLRSQPV 10 20 30 140 150 160 170 180 190 pF1KE5 YIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVLPGQSPVLRIII :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVLPGQSPVLRIII 40 50 60 70 80 90 200 210 220 230 240 250 pF1KE5 ENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMALDGQNIYN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMALDGQNIYN 100 110 120 130 140 150 260 270 280 290 300 310 pF1KE5 ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGIISSPYA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGIISSPYA 160 170 180 190 200 210 320 330 340 350 360 370 pF1KE5 GAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGIPGNSVLLVTNLN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGIPGNSVLLVTNLN 220 230 240 250 260 270 380 390 400 410 420 430 pF1KE5 PDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLR 280 290 300 310 320 330 440 450 460 470 480 490 pF1KE5 ATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSV 340 350 360 370 380 390 500 510 520 530 540 550 pF1KE5 TVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVS 400 410 420 430 440 450 pF1KE5 FSKSTI :::::: NP_001 FSKSTI >>XP_016870854 (OMIM: 607527) PREDICTED: polypyrimidine (452 aa) initn: 2952 init1: 2952 opt: 2952 Z-score: 2323.3 bits: 439.4 E(85289): 1.1e-122 Smith-Waterman score: 2952; 100.0% identity (100.0% similar) in 452 aa overlap (107-558:1-452) 80 90 100 110 120 130 pF1KE5 TEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTPITPHLRSQPVYIQY :::::::::::::::::::::::::::::: XP_016 MASEEAAVTMVNYYTPITPHLRSQPVYIQY 10 20 30 140 150 160 170 180 190 pF1KE5 SNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVLPGQSPVLRIIIENLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVLPGQSPVLRIIIENLF 40 50 60 70 80 90 200 210 220 230 240 250 pF1KE5 YPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMALDGQNIYNACCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 YPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMALDGQNIYNACCT 100 110 120 130 140 150 260 270 280 290 300 310 pF1KE5 LRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGIISSPYAGAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGIISSPYAGAAG 160 170 180 190 200 210 320 330 340 350 360 370 pF1KE5 FAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGIPGNSVLLVTNLNPDLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 FAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGIPGNSVLLVTNLNPDLI 220 230 240 250 260 270 380 390 400 410 420 430 pF1KE5 TPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 TPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATLS 280 290 300 310 320 330 440 450 460 470 480 490 pF1KE5 KHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDD 340 350 360 370 380 390 500 510 520 530 540 550 pF1KE5 LKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSKS 400 410 420 430 440 450 pF1KE5 TI :: XP_016 TI >>NP_002810 (OMIM: 600693) polypyrimidine tract-binding (557 aa) initn: 2138 init1: 1096 opt: 2736 Z-score: 2153.3 bits: 408.3 E(85289): 3.3e-113 Smith-Waterman score: 2736; 76.7% identity (90.9% similar) in 550 aa overlap (17-558:10-557) 10 20 30 40 50 pF1KE5 MDASPSPFSLPKKLNELSARRGSDELLSSGIINGPFTMNSSTPSTANGNDSKKFKRD-RP ....::::::.:. . :::: :.:.. :.:::::::::: : : NP_002 MDGIVPDIAVGTKRGSDELFSTCVTNGPFIMSSNSASAANGNDSKKFKGDSRS 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 PCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNY ::::.:.::.: ::::.:.:::::::::::::::::::.:::.:: .:::: ::::: NP_002 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNY 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE5 YTPITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLAL--SGGPSNE :: .:: ::.::.:::.:::.:::::. :::::::::::::..::::.::: :.. . NP_002 YTSVTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDA 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE5 GTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVN : .. :::::::::.:::::::::.::::::::::::::::::::::::::::::::::. NP_002 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE5 AHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPM :..::..::::::::::::::::::::::::::::::::::.:: :::.::.::::. : NP_002 AQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTM 240 250 260 270 280 290 300 310 320 330 340 350 pF1KE5 AAAFGAPGIIS-SPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVT----GRM ::::::::::: :::::: :: :....:::.::::: : :::.::.: :.:.. ::. NP_002 AAAFGAPGIISASPYAGA-GFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAAGRI 300 310 320 330 340 350 360 370 380 390 400 410 pF1KE5 AIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADAN :::: .: :::::::.::::. .::..:::::::::::.::::.:::::::::::::.: NP_002 AIPGLAGA-GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGN 360 370 380 390 400 410 420 430 440 450 460 470 pF1KE5 QAQLAMNHLSGQRLYGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKN ::::::.::.:..:.:: .: :::::: ::::::::::::::::..:::::::::::::: NP_002 QAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKN 420 430 440 450 460 470 480 490 500 510 520 530 pF1KE5 FQNIFPPSATLHLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAI ::::::::::::::::::::. .::: :: : ::.::::::::::::::.::::::. NP_002 FQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAV 480 490 500 510 520 530 540 550 pF1KE5 QALIELHNHDLGENHHLRVSFSKSTI ::::.::::::::::::::::::::: NP_002 QALIDLHNHDLGENHHLRVSFSKSTI 540 550 558 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 05:44:53 2016 done: Tue Nov 8 05:44:54 2016 Total Scan time: 9.050 Total Display time: 0.110 Function used was FASTA [36.3.4 Apr, 2011]